[INFO] fetching crate deepbiop-bam 0.1.16... [INFO] checking deepbiop-bam-0.1.16 against master#f5711a55f5d5e2f942057d0f6d648dd2d8b2c37b for pr-148329 [INFO] extracting crate deepbiop-bam 0.1.16 into /workspace/builds/worker-3-tc1/source [INFO] started tweaking crates.io crate deepbiop-bam 0.1.16 [INFO] finished tweaking crates.io crate deepbiop-bam 0.1.16 [INFO] tweaked toml for crates.io crate deepbiop-bam 0.1.16 written to /workspace/builds/worker-3-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate deepbiop-bam 0.1.16 on toolchain f5711a55f5d5e2f942057d0f6d648dd2d8b2c37b [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+f5711a55f5d5e2f942057d0f6d648dd2d8b2c37b" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate deepbiop-bam 0.1.16 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+f5711a55f5d5e2f942057d0f6d648dd2d8b2c37b" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded is-macro v0.3.7 [INFO] [stderr] Downloaded rustpython-parser-core v0.4.0 [INFO] [stderr] Downloaded unic-emoji-char v0.9.0 [INFO] [stderr] Downloaded rustpython-parser-vendored v0.4.0 [INFO] [stderr] Downloaded unicode_names2_generator v1.3.0 [INFO] [stderr] Downloaded pyo3-stub-gen-derive v0.17.0 [INFO] [stderr] Downloaded pyo3-stub-gen v0.17.0 [INFO] [stderr] Downloaded bio-types v1.0.4 [INFO] [stderr] Downloaded arrow-cast v57.0.0 [INFO] [stderr] Downloaded noodles-fasta v0.56.0 [INFO] [stderr] Downloaded editdistancek v1.0.2 [INFO] [stderr] Downloaded custom_derive v0.1.7 [INFO] [stderr] Downloaded multimap v0.10.1 [INFO] [stderr] Downloaded ug v0.5.0 [INFO] [stderr] Downloaded arrow-ipc v57.0.0 [INFO] [stderr] Downloaded arrow-array v57.0.0 [INFO] [stderr] Downloaded brotli v8.0.2 [INFO] [stderr] Downloaded arrow-select v57.0.0 [INFO] [stderr] Downloaded rustc_version v0.1.7 [INFO] [stderr] Downloaded parquet v57.0.0 [INFO] [stderr] Downloaded lexical-util v1.0.7 [INFO] [stderr] Downloaded statrs v0.18.0 [INFO] [stderr] Downloaded noodles-sam v0.79.0 [INFO] [stderr] Downloaded numpy v0.27.0 [INFO] [stderr] Downloaded arrow v57.0.0 [INFO] [stderr] Downloaded nalgebra v0.33.2 [INFO] [stderr] Downloaded pyo3-ffi v0.27.1 [INFO] [stderr] Downloaded pyo3-macros-backend v0.27.1 [INFO] [stderr] Downloaded buffer-redux v1.0.2 [INFO] [stderr] Downloaded zip v1.1.4 [INFO] [stderr] Downloaded deepbiop-core v0.1.16 [INFO] [stderr] Downloaded arrow-ord v57.0.0 [INFO] [stderr] Downloaded arrow-row v57.0.0 [INFO] [stderr] Downloaded arrow-string v57.0.0 [INFO] [stderr] Downloaded bio v3.0.0 [INFO] [stderr] Downloaded rand_distr v0.5.1 [INFO] [stderr] Downloaded deepbiop-utils v0.1.16 [INFO] [stderr] Downloaded petgraph v0.8.3 [INFO] [stderr] Downloaded deepbiop-fq v0.1.16 [INFO] [stderr] Downloaded malachite-base v0.4.22 [INFO] [stderr] Downloaded arrow-json v57.0.0 [INFO] [stderr] Downloaded raw-cpuid v11.6.0 [INFO] [stderr] Downloaded candle-core v0.9.2-alpha.1 [INFO] [stderr] Downloaded noodles-bam v0.83.0 [INFO] [stderr] Downloaded noodles-csi v0.51.0 [INFO] [stderr] Downloaded noodles v0.101.0 [INFO] [stderr] Downloaded pyo3-build-config v0.27.1 [INFO] [stderr] Downloaded reborrow v0.5.5 [INFO] [stderr] Downloaded sysctl v0.6.0 [INFO] [stderr] Downloaded gemm-common v0.18.2 [INFO] [stderr] Downloaded gemm-f64 v0.18.2 [INFO] [stderr] Downloaded gemm v0.18.2 [INFO] [stderr] Downloaded safetensors v0.4.5 [INFO] [stderr] Downloaded arrow-csv v57.0.0 [INFO] [stderr] Downloaded arrow-buffer v57.0.0 [INFO] [stderr] Downloaded ordered-float v5.1.0 [INFO] [stderr] Downloaded pyo3-macros v0.27.1 [INFO] [stderr] Downloaded lalrpop-util v0.20.2 [INFO] [stderr] Downloaded malachite v0.4.22 [INFO] [stderr] Downloaded malachite-bigint v0.2.3 [INFO] [stderr] Downloaded pyo3 v0.27.1 [INFO] [stderr] Downloaded malachite-nz v0.4.22 [INFO] [stderr] Downloaded derefable v0.1.0 [INFO] [stderr] Downloaded getset v0.1.6 [INFO] [stderr] Downloaded pulp v0.21.5 [INFO] [stderr] Downloaded itertools-num v0.1.3 [INFO] [stderr] Downloaded semver v0.1.20 [INFO] [stderr] Downloaded newtype_derive v0.1.6 [INFO] [stderr] Downloaded triple_accel v0.4.0 [INFO] [stderr] Downloaded gemm-c32 v0.18.2 [INFO] [stderr] Downloaded gemm-c64 v0.18.2 [INFO] [stderr] Downloaded gemm-f16 v0.18.2 [INFO] [stderr] Downloaded gemm-f32 v0.18.2 [INFO] [stderr] Downloaded dyn-stack-macros v0.1.3 [INFO] [stderr] Downloaded needletail v0.5.1 [INFO] [stderr] Downloaded noodles-fastq v0.21.0 [INFO] [stderr] Downloaded lexical-parse-float v1.0.6 [INFO] [stderr] Downloaded lexical-write-float v1.0.6 [INFO] [stderr] Downloaded target-lexicon v0.13.3 [INFO] [stderr] Downloaded rustpython-ast v0.4.0 [INFO] [stderr] Downloaded dyn-stack v0.13.2 [INFO] [stderr] Downloaded flatbuffers v25.9.23 [INFO] [stderr] Downloaded arrow-data v57.0.0 [INFO] [stderr] Downloaded lexical v7.0.5 [INFO] [stderr] Downloaded noodles-core v0.18.0 [INFO] [stderr] Downloaded malachite-q v0.4.22 [INFO] [stderr] Downloaded unicode_names2 v1.3.0 [INFO] [stderr] Downloaded rustpython-parser v0.4.0 [INFO] [stderr] Downloaded lexical-parse-integer v1.0.6 [INFO] [stderr] Downloaded lexical-core v1.0.6 [INFO] [stderr] Downloaded noodles-bgzf v0.43.0 [INFO] [stderr] Downloaded arrow-schema v57.0.0 [INFO] [stderr] Downloaded arrow-arith v57.0.0 [INFO] [stderr] Downloaded lexical-write-integer v1.0.6 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+f5711a55f5d5e2f942057d0f6d648dd2d8b2c37b" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] bce6ddd71603d016bbfe56f042244fd6afad4719cd27d656d993e0c5c322a167 [INFO] running `Command { std: "docker" "start" "-a" "bce6ddd71603d016bbfe56f042244fd6afad4719cd27d656d993e0c5c322a167", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "bce6ddd71603d016bbfe56f042244fd6afad4719cd27d656d993e0c5c322a167", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "bce6ddd71603d016bbfe56f042244fd6afad4719cd27d656d993e0c5c322a167", kill_on_drop: false }` [INFO] [stdout] bce6ddd71603d016bbfe56f042244fd6afad4719cd27d656d993e0c5c322a167 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+f5711a55f5d5e2f942057d0f6d648dd2d8b2c37b" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 36501152a3b74cd84408d5caca640ceeaa8cffad73151f47e70323418cd08d70 [INFO] running `Command { std: "docker" "start" "-a" "36501152a3b74cd84408d5caca640ceeaa8cffad73151f47e70323418cd08d70", kill_on_drop: false }` [INFO] [stderr] Compiling quote v1.0.41 [INFO] [stderr] Compiling libm v0.2.15 [INFO] [stderr] Compiling serde_core v1.0.228 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling zerocopy v0.8.27 [INFO] [stderr] Compiling target-lexicon v0.13.3 [INFO] [stderr] Compiling jobserver v0.1.34 [INFO] [stderr] Checking either v1.15.0 [INFO] [stderr] Compiling getrandom v0.2.16 [INFO] [stderr] Checking regex-automata v0.4.13 [INFO] [stderr] Compiling ahash v0.8.12 [INFO] [stderr] Checking lexical-util v1.0.7 [INFO] [stderr] Compiling syn v2.0.108 [INFO] [stderr] Checking arrow-schema v57.0.0 [INFO] [stderr] Compiling siphasher v1.0.1 [INFO] [stderr] Checking rayon v1.11.0 [INFO] [stderr] Compiling cc v1.2.44 [INFO] [stderr] Compiling phf_shared v0.11.3 [INFO] [stderr] Compiling pulp v0.21.5 [INFO] [stderr] Compiling rand_core v0.6.4 [INFO] [stderr] Checking zlib-rs v0.5.2 [INFO] [stderr] Compiling seq-macro v0.3.6 [INFO] [stderr] Compiling ryu v1.0.20 [INFO] [stderr] Checking reborrow v0.5.5 [INFO] [stderr] Checking lexical-write-integer v1.0.6 [INFO] [stderr] Checking lexical-parse-integer v1.0.6 [INFO] [stderr] Compiling itertools v0.11.0 [INFO] [stderr] Compiling dyn-stack-macros v0.1.3 [INFO] [stderr] Compiling malachite-nz v0.4.22 [INFO] [stderr] Checking raw-cpuid v11.6.0 [INFO] [stderr] Compiling matrixmultiply v0.3.10 [INFO] [stderr] Checking lexical-write-float v1.0.6 [INFO] [stderr] Compiling unicode-width v0.2.2 [INFO] [stderr] Checking lexical-parse-float v1.0.6 [INFO] [stderr] Compiling crunchy v0.2.4 [INFO] [stderr] Compiling pyo3-build-config v0.27.1 [INFO] [stderr] Compiling unicode-xid v0.2.6 [INFO] [stderr] Compiling getopts v0.2.24 [INFO] [stderr] Compiling tiny-keccak v2.0.2 [INFO] [stderr] Checking lexical-core v1.0.6 [INFO] [stderr] Compiling unic-char-range v0.9.0 [INFO] [stderr] Compiling unic-common v0.9.0 [INFO] [stderr] Compiling rustpython-parser-vendored v0.4.0 [INFO] [stderr] Compiling unic-char-property v0.9.0 [INFO] [stderr] Compiling unic-ucd-version v0.9.0 [INFO] [stderr] Compiling flatbuffers v25.9.23 [INFO] [stderr] Compiling zstd-sys v2.0.16+zstd.1.5.7 [INFO] [stderr] Compiling anyhow v1.0.100 [INFO] [stderr] Checking num-integer v0.1.46 [INFO] [stderr] Checking chrono v0.4.42 [INFO] [stderr] Checking libz-rs-sys v0.5.2 [INFO] [stderr] Checking atoi v2.0.0 [INFO] [stderr] Checking bstr v1.12.1 [INFO] [stderr] Checking regex v1.12.2 [INFO] [stderr] Compiling memoffset v0.9.1 [INFO] [stderr] Compiling ppv-lite86 v0.2.21 [INFO] [stderr] Checking flate2 v1.1.5 [INFO] [stderr] Checking num-bigint v0.4.6 [INFO] [stderr] Compiling hashbrown v0.14.5 [INFO] [stderr] Checking serde_json v1.0.145 [INFO] [stderr] Compiling lzma-sys v0.1.20 [INFO] [stderr] Compiling bzip2-sys v0.1.13+1.0.8 [INFO] [stderr] Compiling phf v0.11.3 [INFO] [stderr] Checking csv-core v0.1.13 [INFO] [stderr] Compiling zstd-safe v7.2.4 [INFO] [stderr] Checking alloc-no-stdlib v2.0.4 [INFO] [stderr] Checking noodles-bgzf v0.43.0 [INFO] [stderr] Checking alloc-stdlib v0.2.2 [INFO] [stderr] Checking csv v1.4.0 [INFO] [stderr] Checking noodles-core v0.18.0 [INFO] [stderr] Compiling rand_chacha v0.3.1 [INFO] [stderr] Compiling unic-ucd-ident v0.9.0 [INFO] [stderr] Compiling unic-emoji-char v0.9.0 [INFO] [stderr] Compiling lalrpop-util v0.20.2 [INFO] [stderr] Compiling rustc-hash v1.1.0 [INFO] [stderr] Compiling indoc v2.0.7 [INFO] [stderr] Checking simdutf8 v0.1.5 [INFO] [stderr] Compiling rand v0.8.5 [INFO] [stderr] Checking noodles-csi v0.51.0 [INFO] [stderr] Compiling snap v1.1.1 [INFO] [stderr] Checking stable_deref_trait v1.2.1 [INFO] [stderr] Checking unindent v0.2.4 [INFO] [stderr] Checking toml_parser v1.0.4 [INFO] [stderr] Checking brotli-decompressor v5.0.0 [INFO] [stderr] Checking serde_spanned v1.0.3 [INFO] [stderr] Checking toml_datetime v0.7.3 [INFO] [stderr] Checking num-iter v0.1.45 [INFO] [stderr] Checking noodles-sam v0.79.0 [INFO] [stderr] Checking ordered-float v2.10.1 [INFO] [stderr] Checking ordered-float v5.1.0 [INFO] [stderr] Checking itertools v0.14.0 [INFO] [stderr] Compiling pyo3-macros-backend v0.27.1 [INFO] [stderr] Compiling pyo3-ffi v0.27.1 [INFO] [stderr] Compiling malachite-base v0.4.22 [INFO] [stderr] Compiling pyo3 v0.27.1 [INFO] [stderr] Compiling numpy v0.27.0 [INFO] [stderr] Checking twox-hash v2.1.2 [INFO] [stderr] Checking toml_writer v1.0.4 [INFO] [stderr] Checking num-rational v0.4.2 [INFO] [stderr] Compiling zip v1.1.4 [INFO] [stderr] Checking integer-encoding v3.0.4 [INFO] [stderr] Checking bytecount v0.6.9 [INFO] [stderr] Compiling proc-macro2 v0.4.30 [INFO] [stderr] Compiling thiserror v2.0.17 [INFO] [stderr] Checking lz4_flex v0.11.5 [INFO] [stderr] Checking thrift v0.17.0 [INFO] [stderr] Checking toml v0.9.8 [INFO] [stderr] Checking xz2 v0.1.7 [INFO] [stderr] Compiling phf_generator v0.11.3 [INFO] [stderr] Compiling darling_core v0.20.11 [INFO] [stderr] Compiling synstructure v0.13.2 [INFO] [stderr] Checking bzip2 v0.4.4 [INFO] [stderr] Checking brotli v8.0.2 [INFO] [stderr] Checking memmap2 v0.9.9 [INFO] [stderr] Compiling phf_codegen v0.11.3 [INFO] [stderr] Checking noodles-fasta v0.56.0 [INFO] [stderr] Checking noodles-fastq v0.21.0 [INFO] [stderr] Checking num_cpus v1.17.0 [INFO] [stderr] Compiling unicode_names2_generator v1.3.0 [INFO] [stderr] Compiling rustpython-parser v0.4.0 [INFO] [stderr] Checking buffer-redux v1.0.2 [INFO] [stderr] Compiling unicode-xid v0.1.0 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Checking noodles-bam v0.83.0 [INFO] [stderr] Checking inventory v0.3.21 [INFO] [stderr] Checking approx v0.5.1 [INFO] [stderr] Checking lexical v7.0.5 [INFO] [stderr] Checking needletail v0.5.1 [INFO] [stderr] Checking unicode-linebreak v0.1.5 [INFO] [stderr] Compiling syn v0.15.44 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Checking smawk v0.3.2 [INFO] [stderr] Checking tempfile v3.23.0 [INFO] [stderr] Checking textwrap v0.16.2 [INFO] [stderr] Compiling proc-macro-error-attr2 v2.0.0 [INFO] [stderr] Compiling unicode_names2 v1.3.0 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Checking foldhash v0.1.5 [INFO] [stderr] Checking fixedbitset v0.5.7 [INFO] [stderr] Compiling quote v0.6.13 [INFO] [stderr] Checking fxhash v0.2.1 [INFO] [stderr] Checking hashbrown v0.15.5 [INFO] [stderr] Checking itertools-num v0.1.3 [INFO] [stderr] Checking triple_accel v0.4.0 [INFO] [stderr] Checking editdistancek v1.0.2 [INFO] [stderr] Checking custom_derive v0.1.7 [INFO] [stderr] Compiling proc-macro-error2 v2.0.1 [INFO] [stderr] Checking strum v0.26.3 [INFO] [stderr] Checking noodles v0.101.0 [INFO] [stderr] Checking petgraph v0.8.3 [INFO] [stderr] Compiling bytemuck_derive v1.10.2 [INFO] [stderr] Compiling zerocopy-derive v0.8.27 [INFO] [stderr] Compiling serde_derive v1.0.228 [INFO] [stderr] Compiling derive_more-impl v1.0.0 [INFO] [stderr] Compiling thiserror-impl v1.0.69 [INFO] [stderr] Compiling is-macro v0.3.7 [INFO] [stderr] Compiling zerofrom-derive v0.1.6 [INFO] [stderr] error: could not compile `brotli` (lib) [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/rustup-home/toolchains/f5711a55f5d5e2f942057d0f6d648dd2d8b2c37b/bin/rustc --crate-name brotli --edition=2015 /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/brotli-8.0.2/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata -C embed-bitcode=no -C debuginfo=2 --cfg 'feature="alloc-stdlib"' --cfg 'feature="std"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("alloc-stdlib", "benchmark", "billing", "default", "disable-timer", "disallow_large_window_size", "external-literal-probability", "ffi-api", "float64", "floating_point_context_mixing", "no-stdlib-ffi-binding", "pass-through-ffi-panics", "seccomp", "sha2", "simd", "std", "validation", "vector_scratch_space"))' -C metadata=fbe35411e319994e -C extra-filename=-8eb04c1a1ff4614b --out-dir /opt/rustwide/target/debug/deps -L dependency=/opt/rustwide/target/debug/deps --extern alloc_no_stdlib=/opt/rustwide/target/debug/deps/liballoc_no_stdlib-7b1bd6f28b6396be.rmeta --extern alloc_stdlib=/opt/rustwide/target/debug/deps/liballoc_stdlib-72e1816e3e7f5ce9.rmeta --extern brotli_decompressor=/opt/rustwide/target/debug/deps/libbrotli_decompressor-ed3c7399c8be7b3d.rmeta --cap-lints allow --cap-lints=forbid` (signal: 9, SIGKILL: kill) [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] running `Command { std: "docker" "inspect" "36501152a3b74cd84408d5caca640ceeaa8cffad73151f47e70323418cd08d70", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "36501152a3b74cd84408d5caca640ceeaa8cffad73151f47e70323418cd08d70", kill_on_drop: false }` [INFO] [stdout] 36501152a3b74cd84408d5caca640ceeaa8cffad73151f47e70323418cd08d70