[INFO] cloning repository https://github.com/ARU-life-sciences/rep
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/ARU-life-sciences/rep" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FARU-life-sciences%2Frep", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FARU-life-sciences%2Frep'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] a255dbf0604222168843648aeb378f8aeca1e713
[INFO] checking ARU-life-sciences/rep against try#ddcf048784667508cd676fef4667f88ae15628a3 for pr-148271
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FARU-life-sciences%2Frep" "/workspace/builds/worker-7-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-7-tc2/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/ARU-life-sciences/rep
[INFO] finished tweaking git repo https://github.com/ARU-life-sciences/rep
[INFO] tweaked toml for git repo https://github.com/ARU-life-sciences/rep written to /workspace/builds/worker-7-tc2/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/ARU-life-sciences/rep on toolchain ddcf048784667508cd676fef4667f88ae15628a3
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ddcf048784667508cd676fef4667f88ae15628a3" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/ARU-life-sciences/rep already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ddcf048784667508cd676fef4667f88ae15628a3" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+ddcf048784667508cd676fef4667f88ae15628a3" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] c1873181f6312fd83038942cc9c09c8be807263d0b589bbcf262db341b4b0cfb
[INFO] running `Command { std: "docker" "start" "-a" "c1873181f6312fd83038942cc9c09c8be807263d0b589bbcf262db341b4b0cfb", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "c1873181f6312fd83038942cc9c09c8be807263d0b589bbcf262db341b4b0cfb", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "c1873181f6312fd83038942cc9c09c8be807263d0b589bbcf262db341b4b0cfb", kill_on_drop: false }`
[INFO] [stdout] c1873181f6312fd83038942cc9c09c8be807263d0b589bbcf262db341b4b0cfb
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+ddcf048784667508cd676fef4667f88ae15628a3" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 92551e82a32d6814cfb4541a55aac530d0381716508c50e4241552e86f1b8ee4
[INFO] running `Command { std: "docker" "start" "-a" "92551e82a32d6814cfb4541a55aac530d0381716508c50e4241552e86f1b8ee4", kill_on_drop: false }`
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]    Compiling num-traits v0.2.18
[INFO] [stderr]    Compiling serde v1.0.197
[INFO] [stderr]     Checking memchr v2.7.1
[INFO] [stderr]    Compiling matrixmultiply v0.3.8
[INFO] [stderr]    Compiling syn v2.0.53
[INFO] [stderr]     Checking getrandom v0.2.12
[INFO] [stderr]     Checking bytemuck v1.15.0
[INFO] [stderr]    Compiling num-rational v0.4.1
[INFO] [stderr]     Checking rand_core v0.6.4
[INFO] [stderr]     Checking safe_arch v0.7.1
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]     Checking rand_chacha v0.3.1
[INFO] [stderr]     Checking rand v0.8.5
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]     Checking wide v0.7.15
[INFO] [stderr]     Checking aho-corasick v1.1.3
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]     Checking regex-syntax v0.8.2
[INFO] [stderr]     Checking utf8parse v0.2.1
[INFO] [stderr]     Checking anstyle-parse v0.2.3
[INFO] [stderr]     Checking num-integer v0.1.46
[INFO] [stderr]     Checking num-complex v0.4.5
[INFO] [stderr]     Checking approx v0.5.1
[INFO] [stderr]     Checking rand_distr v0.4.3
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]     Checking anstyle v1.0.6
[INFO] [stderr]     Checking hashbrown v0.14.3
[INFO] [stderr]    Compiling anyhow v1.0.81
[INFO] [stderr]     Checking anstyle-query v1.0.2
[INFO] [stderr]     Checking colorchoice v1.0.0
[INFO] [stderr]     Checking csv-core v0.1.11
[INFO] [stderr]     Checking anstream v0.6.13
[INFO] [stderr]     Checking either v1.10.0
[INFO] [stderr]     Checking bit-vec v0.6.3
[INFO] [stderr]     Checking strsim v0.11.0
[INFO] [stderr]     Checking fixedbitset v0.4.2
[INFO] [stderr]     Checking clap_lex v0.7.0
[INFO] [stderr]     Checking fxhash v0.2.1
[INFO] [stderr]     Checking simba v0.6.0
[INFO] [stderr]     Checking bit-set v0.5.3
[INFO] [stderr]     Checking itertools v0.11.0
[INFO] [stderr]     Checking clap_builder v4.5.2
[INFO] [stderr]     Checking indexmap v2.2.5
[INFO] [stderr]     Checking ndarray v0.15.6
[INFO] [stderr]     Checking regex-automata v0.4.6
[INFO] [stderr]     Checking petgraph v0.6.4
[INFO] [stderr]     Checking ordered-float v3.9.2
[INFO] [stderr]    Compiling serde_derive v1.0.197
[INFO] [stderr]    Compiling thiserror-impl v1.0.58
[INFO] [stderr]    Compiling strum_macros v0.25.3
[INFO] [stderr]     Checking regex v1.10.3
[INFO] [stderr]    Compiling enum-map-derive v0.17.0
[INFO] [stderr]     Checking itertools-num v0.1.3
[INFO] [stderr]     Checking enum-map v2.7.3
[INFO] [stderr]    Compiling nalgebra-macros v0.1.0
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]    Compiling getset v0.1.2
[INFO] [stderr]     Checking thiserror v1.0.58
[INFO] [stderr]     Checking triple_accel v0.4.0
[INFO] [stderr]     Checking bytecount v0.6.7
[INFO] [stderr]    Compiling rustix v0.38.34
[INFO] [stderr]     Checking strum v0.25.0
[INFO] [stderr]     Checking editdistancek v1.0.2
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking walkdir v2.5.0
[INFO] [stderr]     Checking clap v4.5.2
[INFO] [stderr]     Checking bitflags v2.9.0
[INFO] [stderr]     Checking linux-raw-sys v0.4.15
[INFO] [stderr]     Checking once_cell v1.21.3
[INFO] [stderr]     Checking fastrand v2.3.0
[INFO] [stderr]     Checking bio-types v1.0.1
[INFO] [stderr]     Checking nalgebra v0.29.0
[INFO] [stderr]     Checking tempfile v3.11.0
[INFO] [stderr]     Checking multimap v0.9.1
[INFO] [stderr]     Checking bv v0.11.1
[INFO] [stderr]     Checking csv v1.3.0
[INFO] [stderr]     Checking vec_map v0.8.2
[INFO] [stderr]     Checking statrs v0.16.0
[INFO] [stderr]     Checking bio v1.5.0
[INFO] [stderr]     Checking rep v0.1.3 (/opt/rustwide/workdir)
[INFO] [stdout] error[E0560]: struct `cli::CliArgs` has no field named `curation_only`
[INFO] [stdout]    --> src/repeatmasker.rs:122:13
[INFO] [stdout]     |
[INFO] [stdout] 122 |             curation_only: None,
[INFO] [stdout]     |             ^^^^^^^^^^^^^ `cli::CliArgs` does not have this field
[INFO] [stdout]     |
[INFO] [stdout]     = note: all struct fields are already assigned
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0560]: struct `cli::CliArgs` has no field named `curation_rmdl_library`
[INFO] [stdout]    --> src/repeatmasker.rs:123:13
[INFO] [stdout]     |
[INFO] [stdout] 123 |             curation_rmdl_library: None,
[INFO] [stdout]     |             ^^^^^^^^^^^^^^^^^^^^^ `cli::CliArgs` does not have this field
[INFO] [stdout]     |
[INFO] [stdout]     = note: all struct fields are already assigned
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0560]: struct `cli::CliArgs` has no field named `curation_only`
[INFO] [stdout]    --> src/repeatmodeler.rs:112:13
[INFO] [stdout]     |
[INFO] [stdout] 112 |             curation_only: None,
[INFO] [stdout]     |             ^^^^^^^^^^^^^ `cli::CliArgs` does not have this field
[INFO] [stdout]     |
[INFO] [stdout]     = note: all struct fields are already assigned
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0560]: struct `cli::CliArgs` has no field named `curation_rmdl_library`
[INFO] [stdout]    --> src/repeatmodeler.rs:113:13
[INFO] [stdout]     |
[INFO] [stdout] 113 |             curation_rmdl_library: None,
[INFO] [stdout]     |             ^^^^^^^^^^^^^^^^^^^^^ `cli::CliArgs` does not have this field
[INFO] [stdout]     |
[INFO] [stdout]     = note: all struct fields are already assigned
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] For more information about this error, try `rustc --explain E0560`.
[INFO] [stdout] 
[INFO] [stderr] error: could not compile `rep` (lib test) due to 4 previous errors
[INFO] running `Command { std: "docker" "inspect" "92551e82a32d6814cfb4541a55aac530d0381716508c50e4241552e86f1b8ee4", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "92551e82a32d6814cfb4541a55aac530d0381716508c50e4241552e86f1b8ee4", kill_on_drop: false }`
[INFO] [stdout] 92551e82a32d6814cfb4541a55aac530d0381716508c50e4241552e86f1b8ee4
