[INFO] cloning repository https://github.com/LooneyRichie/Instant-DNA [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/LooneyRichie/Instant-DNA" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FLooneyRichie%2FInstant-DNA", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FLooneyRichie%2FInstant-DNA'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 0bfbf51790c6af7d5194c7dc86c28cfe0d650bfd [INFO] checking LooneyRichie/Instant-DNA against master#75948c8bb3bd37f1e8ee20273a04edea4c1f84f8 for pr-147984-1 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FLooneyRichie%2FInstant-DNA" "/workspace/builds/worker-7-tc1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-7-tc1/source'... [INFO] [stderr] done. [INFO] started tweaking git repo https://github.com/LooneyRichie/Instant-DNA [INFO] finished tweaking git repo https://github.com/LooneyRichie/Instant-DNA [INFO] tweaked toml for git repo https://github.com/LooneyRichie/Instant-DNA written to /workspace/builds/worker-7-tc1/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/LooneyRichie/Instant-DNA on toolchain 75948c8bb3bd37f1e8ee20273a04edea4c1f84f8 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+75948c8bb3bd37f1e8ee20273a04edea4c1f84f8" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/LooneyRichie/Instant-DNA already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+75948c8bb3bd37f1e8ee20273a04edea4c1f84f8" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Updating crates.io index [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded linear-map v1.2.0 [INFO] [stderr] Downloaded fs-utils v1.1.4 [INFO] [stderr] Downloaded find-msvc-tools v0.1.0 [INFO] [stderr] Downloaded itertools-num v0.1.3 [INFO] [stderr] Downloaded derive-new v0.6.0 [INFO] [stderr] Downloaded nalgebra-macros v0.1.0 [INFO] [stderr] Downloaded enum-map-derive v0.17.0 [INFO] [stderr] Downloaded ieee754 v0.2.6 [INFO] [stderr] Downloaded custom_derive v0.1.7 [INFO] [stderr] Downloaded editdistancek v1.0.2 [INFO] [stderr] Downloaded wasm-bindgen-futures v0.4.51 [INFO] [stderr] Downloaded matrixmultiply v0.3.10 [INFO] [stderr] Downloaded simba v0.6.0 [INFO] [stderr] Downloaded triple_accel v0.4.0 [INFO] [stderr] Downloaded bio-types v1.0.4 [INFO] [stderr] Downloaded rust-htslib v0.44.1 [INFO] [stderr] Downloaded statrs v0.16.1 [INFO] [stderr] Downloaded derive-new v0.5.9 [INFO] [stderr] Downloaded enum-map v2.7.3 [INFO] [stderr] Downloaded bio v1.6.0 [INFO] [stderr] Downloaded multimap v0.9.1 [INFO] [stderr] Downloaded winapi-util v0.1.10 [INFO] [stderr] Downloaded nalgebra-macros v0.2.2 [INFO] [stderr] Downloaded cc v1.2.35 [INFO] [stderr] Downloaded newtype_derive v0.1.6 [INFO] [stderr] Downloaded ndarray v0.15.6 [INFO] [stderr] Downloaded nalgebra v0.29.0 [INFO] [stderr] Downloaded nalgebra v0.32.6 [INFO] [stderr] Downloaded rug v1.28.0 [INFO] [stderr] Downloaded curl-sys v0.4.83+curl-8.15.0 [INFO] [stderr] Downloaded hts-sys v2.2.0 [INFO] [stderr] Downloaded gmp-mpfr-sys v1.6.8 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+75948c8bb3bd37f1e8ee20273a04edea4c1f84f8" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 15e7f57619738d872d7b720b5b8c19fb1d4fc2a5c78189457d082a278537b495 [INFO] running `Command { std: "docker" "start" "-a" "15e7f57619738d872d7b720b5b8c19fb1d4fc2a5c78189457d082a278537b495", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "15e7f57619738d872d7b720b5b8c19fb1d4fc2a5c78189457d082a278537b495", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "15e7f57619738d872d7b720b5b8c19fb1d4fc2a5c78189457d082a278537b495", kill_on_drop: false }` [INFO] [stdout] 15e7f57619738d872d7b720b5b8c19fb1d4fc2a5c78189457d082a278537b495 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+75948c8bb3bd37f1e8ee20273a04edea4c1f84f8" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] c6843f8c0c17b2df27b34e140bd89638358a61a70b1e9429b11d48d239b6da1a [INFO] running `Command { std: "docker" "start" "-a" "c6843f8c0c17b2df27b34e140bd89638358a61a70b1e9429b11d48d239b6da1a", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.101 [INFO] [stderr] Compiling unicode-ident v1.0.18 [INFO] [stderr] Compiling libc v0.2.175 [INFO] [stderr] Compiling autocfg v1.5.0 [INFO] [stderr] Compiling find-msvc-tools v0.1.0 [INFO] [stderr] Compiling pkg-config v0.3.32 [INFO] [stderr] Checking cfg-if v1.0.3 [INFO] [stderr] Compiling libm v0.2.15 [INFO] [stderr] Compiling serde v1.0.219 [INFO] [stderr] Checking stable_deref_trait v1.2.0 [INFO] [stderr] Checking smallvec v1.15.1 [INFO] [stderr] Checking memchr v2.7.5 [INFO] [stderr] Compiling parking_lot_core v0.9.11 [INFO] [stderr] Checking itoa v1.0.15 [INFO] [stderr] Checking pin-project-lite v0.2.16 [INFO] [stderr] Compiling zerocopy v0.8.26 [INFO] [stderr] Checking 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[stderr] Compiling lock_api v0.4.13 [INFO] [stderr] Compiling matrixmultiply v0.3.10 [INFO] [stderr] Checking indexmap v2.11.0 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling openssl v0.10.73 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Checking foreign-types v0.3.2 [INFO] [stderr] Checking wide v0.7.33 [INFO] [stderr] Compiling syn v2.0.106 [INFO] [stderr] Checking http v0.2.12 [INFO] [stderr] Checking tracing-core v0.1.34 [INFO] [stderr] Checking futures-task v0.3.31 [INFO] [stderr] Compiling native-tls v0.2.14 [INFO] [stderr] Checking futures-sink v0.3.31 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Checking ryu v1.0.20 [INFO] [stderr] Checking bitflags v2.9.4 [INFO] [stderr] Checking percent-encoding v2.3.2 [INFO] [stderr] Checking log v0.4.28 [INFO] [stderr] Compiling httparse v1.10.1 [INFO] [stderr] Checking pin-utils v0.1.0 [INFO] [stderr] Checking form_urlencoded v1.2.2 [INFO] [stderr] Checking futures-util v0.3.31 [INFO] 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v0.1.20 [INFO] [stderr] Compiling bzip2-sys v0.1.13+1.0.8 [INFO] [stderr] Compiling hts-sys v2.2.0 [INFO] [stderr] Checking ipnet v2.11.0 [INFO] [stderr] Checking strum v0.25.0 [INFO] [stderr] Checking sync_wrapper v0.1.2 [INFO] [stderr] Checking linear-map v1.2.0 [INFO] [stderr] Checking termcolor v1.4.1 [INFO] [stderr] Checking editdistancek v1.0.2 [INFO] [stderr] Checking humantime v2.2.0 [INFO] [stderr] Checking iana-time-zone v0.1.63 [INFO] [stderr] Checking crossbeam v0.8.4 [INFO] [stderr] Checking rayon v1.11.0 [INFO] [stderr] Checking flate2 v1.1.2 [INFO] [stderr] Checking num_cpus v1.17.0 [INFO] [stderr] Compiling nalgebra-macros v0.1.0 [INFO] [stderr] Compiling derive-new v0.5.9 [INFO] [stderr] Checking env_logger v0.10.2 [INFO] [stderr] Checking memmap2 v0.9.8 [INFO] [stderr] Checking fastrand v2.3.0 [INFO] [stderr] Compiling synstructure v0.13.2 [INFO] [stderr] Checking hex v0.4.3 [INFO] [stderr] Compiling serde_derive v1.0.219 [INFO] [stderr] Compiling zerofrom-derive v0.1.6 [INFO] [stderr] Compiling yoke-derive v0.8.0 [INFO] [stderr] Compiling zerovec-derive v0.11.1 [INFO] [stderr] Compiling displaydoc v0.2.5 [INFO] [stderr] Compiling tokio-macros v2.5.0 [INFO] [stderr] Compiling openssl-macros v0.1.1 [INFO] [stderr] Compiling thiserror-impl v1.0.69 [INFO] [stderr] Compiling derive-new v0.6.0 [INFO] [stderr] Compiling strum_macros v0.26.4 [INFO] [stderr] Compiling enum-map-derive v0.17.0 [INFO] [stderr] Compiling clap_derive v4.5.47 [INFO] [stderr] Checking tokio v1.47.1 [INFO] [stderr] Compiling strum_macros v0.25.3 [INFO] [stderr] Checking enum-map v2.7.3 [INFO] [stderr] Compiling nalgebra-macros v0.2.2 [INFO] [stderr] Checking zerofrom v0.1.6 [INFO] [stderr] Checking yoke v0.8.0 [INFO] [stderr] Checking zerovec v0.11.4 [INFO] [stderr] Checking zerotrie v0.2.2 [INFO] [stderr] Checking nalgebra v0.29.0 [INFO] [stderr] Checking bio-types v1.0.4 [INFO] [stderr] Checking tinystr v0.8.1 [INFO] [stderr] Checking potential_utf v0.1.3 [INFO] [stderr] Checking nalgebra v0.32.6 [INFO] [stderr] Checking icu_locale_core v2.0.0 [INFO] [stderr] Checking icu_collections v2.0.0 [INFO] [stderr] Checking clap v4.5.47 [INFO] [stderr] Checking icu_provider v2.0.0 [INFO] [stderr] Checking icu_properties v2.0.1 [INFO] [stderr] Checking icu_normalizer v2.0.0 [INFO] [stderr] Checking toml_datetime v0.6.11 [INFO] [stderr] Checking serde_spanned v0.6.9 [INFO] [stderr] Checking serde_urlencoded v0.7.1 [INFO] [stderr] Checking vec_map v0.8.2 [INFO] [stderr] Checking csv v1.3.1 [INFO] [stderr] Checking multimap v0.9.1 [INFO] [stderr] Checking chrono v0.4.41 [INFO] [stderr] Checking idna_adapter v1.2.1 [INFO] [stderr] Checking idna v1.1.0 [INFO] [stderr] Checking bincode v1.3.3 [INFO] [stderr] Checking toml_edit v0.22.27 [INFO] [stderr] Checking url v2.5.7 [INFO] [stderr] Checking tokio-util v0.7.16 [INFO] [stderr] Checking h2 v0.3.27 [INFO] [stderr] Checking toml v0.8.23 [INFO] [stderr] Checking statrs v0.16.1 [INFO] [stderr] Checking bio v1.6.0 [INFO] [stderr] Checking hyper v0.14.32 [INFO] [stderr] Checking tokio-native-tls v0.3.1 [INFO] [stderr] Checking hyper-tls v0.5.0 [INFO] [stderr] Checking reqwest v0.11.27 [INFO] [stderr] Checking rust-htslib v0.44.1 [INFO] [stderr] Checking instant_dna v2.0.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused import: `std::collections::HashMap` [INFO] [stdout] --> src/main.rs:3:5 [INFO] [stdout] | [INFO] [stdout] 3 | use std::collections::HashMap; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `Arc` and `Mutex` [INFO] [stdout] --> src/main.rs:4:17 [INFO] [stdout] | [INFO] [stdout] 4 | use std::sync::{Arc, Mutex}; [INFO] [stdout] | ^^^ ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::path::Path` [INFO] [stdout] --> src/raw_converter.rs:3:5 [INFO] [stdout] | [INFO] [stdout] 3 | use std::path::Path; [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `debug` [INFO] [stdout] --> src/raw_converter.rs:6:23 [INFO] [stdout] | [INFO] [stdout] 6 | use log::{info, warn, debug}; [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::collections::HashMap` [INFO] [stdout] --> src/main.rs:3:5 [INFO] [stdout] | [INFO] [stdout] 3 | use std::collections::HashMap; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `Arc` and `Mutex` [INFO] [stdout] --> src/main.rs:4:17 [INFO] [stdout] | [INFO] [stdout] 4 | use std::sync::{Arc, Mutex}; [INFO] [stdout] | ^^^ ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::path::Path` [INFO] [stdout] --> src/raw_converter.rs:3:5 [INFO] [stdout] | [INFO] [stdout] 3 | use std::path::Path; [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `debug` [INFO] [stdout] --> src/raw_converter.rs:6:23 [INFO] [stdout] | [INFO] [stdout] 6 | use log::{info, warn, debug}; [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `rayon::prelude` [INFO] [stdout] --> src/main.rs:1:5 [INFO] [stdout] | [INFO] [stdout] 1 | use rayon::prelude::*; [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `rayon::prelude` [INFO] [stdout] --> src/main.rs:1:5 [INFO] [stdout] | [INFO] [stdout] 1 | use rayon::prelude::*; [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `optimizer` [INFO] [stdout] --> src/sequencer.rs:167:9 [INFO] [stdout] | [INFO] [stdout] 167 | optimizer: &BinaryOptimizer, [INFO] [stdout] | ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_optimizer` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `optimizer` [INFO] [stdout] --> src/sequencer.rs:167:9 [INFO] [stdout] | [INFO] [stdout] 167 | optimizer: &BinaryOptimizer, [INFO] [stdout] | ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_optimizer` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `i` [INFO] [stdout] --> src/binary_optimizer.rs:110:14 [INFO] [stdout] | [INFO] [stdout] 110 | for (i, &byte) in compressed.iter().enumerate() { [INFO] [stdout] | ^ help: if this is intentional, prefix it with an underscore: `_i` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `input_path` [INFO] [stdout] --> src/genetic_analyzer.rs:16:9 [INFO] [stdout] | [INFO] [stdout] 16 | input_path: &str, [INFO] [stdout] | ^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_input_path` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `analysis_type` [INFO] [stdout] --> src/genetic_analyzer.rs:17:9 [INFO] [stdout] | [INFO] [stdout] 17 | analysis_type: &str, [INFO] [stdout] | ^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_analysis_type` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `optimizer` [INFO] [stdout] --> src/genetic_analyzer.rs:18:9 [INFO] [stdout] | [INFO] [stdout] 18 | optimizer: &BinaryOptimizer, [INFO] [stdout] | ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_optimizer` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `optimizer` [INFO] [stdout] --> src/genetic_analyzer.rs:45:9 [INFO] [stdout] | [INFO] [stdout] 45 | optimizer: &BinaryOptimizer, [INFO] [stdout] | ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_optimizer` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `input_path` [INFO] [stdout] --> src/rna_processor.rs:16:9 [INFO] [stdout] | [INFO] [stdout] 16 | input_path: &str, [INFO] [stdout] | ^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_input_path` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `analysis_type` [INFO] [stdout] --> src/rna_processor.rs:17:9 [INFO] [stdout] | [INFO] [stdout] 17 | analysis_type: &str, [INFO] [stdout] | ^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_analysis_type` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `secondary_structure` [INFO] [stdout] --> src/rna_processor.rs:18:9 [INFO] [stdout] | [INFO] [stdout] 18 | secondary_structure: bool, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_secondary_structure` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `optimizer` [INFO] [stdout] --> src/rna_processor.rs:19:9 [INFO] [stdout] | [INFO] [stdout] 19 | optimizer: &BinaryOptimizer, [INFO] [stdout] | ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_optimizer` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `i` [INFO] [stdout] --> src/binary_optimizer.rs:110:14 [INFO] [stdout] | [INFO] [stdout] 110 | for (i, &byte) in compressed.iter().enumerate() { [INFO] [stdout] | ^ help: if this is intentional, prefix it with an underscore: `_i` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `file1` [INFO] [stdout] --> src/alignment.rs:16:9 [INFO] [stdout] | [INFO] [stdout] 16 | file1: &str, [INFO] [stdout] | ^^^^^ help: if this is intentional, prefix it with an underscore: `_file1` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `file2` [INFO] [stdout] --> src/alignment.rs:17:9 [INFO] [stdout] | [INFO] [stdout] 17 | file2: &str, [INFO] [stdout] | ^^^^^ help: if this is intentional, prefix it with an underscore: `_file2` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `algorithm` [INFO] [stdout] --> src/alignment.rs:18:9 [INFO] [stdout] | [INFO] [stdout] 18 | algorithm: &str, [INFO] [stdout] | ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_algorithm` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `optimizer` [INFO] [stdout] --> src/alignment.rs:19:9 [INFO] [stdout] | [INFO] [stdout] 19 | optimizer: &BinaryOptimizer, [INFO] [stdout] | ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_optimizer` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `input_path` [INFO] [stdout] --> src/variant_caller.rs:16:9 [INFO] [stdout] | [INFO] [stdout] 16 | input_path: &str, [INFO] [stdout] | ^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_input_path` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `reference` [INFO] [stdout] --> src/variant_caller.rs:17:9 [INFO] [stdout] | [INFO] [stdout] 17 | reference: &str, [INFO] [stdout] | ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_reference` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `variant_type` [INFO] [stdout] --> src/variant_caller.rs:18:9 [INFO] [stdout] | [INFO] [stdout] 18 | variant_type: &str, [INFO] [stdout] | ^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_variant_type` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `optimizer` [INFO] [stdout] --> src/variant_caller.rs:19:9 [INFO] [stdout] | [INFO] [stdout] 19 | optimizer: &BinaryOptimizer, [INFO] [stdout] | ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_optimizer` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `input_path` [INFO] [stdout] --> src/assembly.rs:20:9 [INFO] [stdout] | [INFO] [stdout] 20 | input_path: &str, [INFO] [stdout] | ^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_input_path` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `algorithm` [INFO] [stdout] --> src/assembly.rs:21:9 [INFO] [stdout] | [INFO] [stdout] 21 | algorithm: &str, [INFO] [stdout] | ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_algorithm` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `optimizer` [INFO] [stdout] --> src/assembly.rs:22:9 [INFO] [stdout] | [INFO] [stdout] 22 | optimizer: &BinaryOptimizer, [INFO] [stdout] | ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_optimizer` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `input_path` [INFO] [stdout] --> src/genetic_analyzer.rs:16:9 [INFO] [stdout] | [INFO] [stdout] 16 | input_path: &str, [INFO] [stdout] | ^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_input_path` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `analysis_type` [INFO] [stdout] --> src/genetic_analyzer.rs:17:9 [INFO] [stdout] | [INFO] [stdout] 17 | analysis_type: &str, [INFO] [stdout] | ^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_analysis_type` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `optimizer` [INFO] [stdout] --> src/genetic_analyzer.rs:18:9 [INFO] [stdout] | [INFO] [stdout] 18 | optimizer: &BinaryOptimizer, [INFO] [stdout] | ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_optimizer` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `optimizer` [INFO] [stdout] --> src/genetic_analyzer.rs:45:9 [INFO] [stdout] | [INFO] [stdout] 45 | optimizer: &BinaryOptimizer, [INFO] [stdout] | ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_optimizer` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `input_path` [INFO] [stdout] --> src/rna_processor.rs:16:9 [INFO] [stdout] | [INFO] [stdout] 16 | input_path: &str, [INFO] [stdout] | ^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_input_path` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `analysis_type` [INFO] [stdout] --> src/rna_processor.rs:17:9 [INFO] [stdout] | [INFO] [stdout] 17 | analysis_type: &str, [INFO] [stdout] | ^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_analysis_type` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `secondary_structure` [INFO] [stdout] --> src/rna_processor.rs:18:9 [INFO] [stdout] | [INFO] [stdout] 18 | secondary_structure: bool, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_secondary_structure` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `optimizer` [INFO] [stdout] --> src/rna_processor.rs:19:9 [INFO] [stdout] | [INFO] [stdout] 19 | optimizer: &BinaryOptimizer, [INFO] [stdout] | ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_optimizer` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `file1` [INFO] [stdout] --> src/alignment.rs:16:9 [INFO] [stdout] | [INFO] [stdout] 16 | file1: &str, [INFO] [stdout] | ^^^^^ help: if this is intentional, prefix it with an underscore: `_file1` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `file2` [INFO] [stdout] --> src/alignment.rs:17:9 [INFO] [stdout] | [INFO] [stdout] 17 | file2: &str, [INFO] [stdout] | ^^^^^ help: if this is intentional, prefix it with an underscore: `_file2` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `algorithm` [INFO] [stdout] --> src/alignment.rs:18:9 [INFO] [stdout] | [INFO] [stdout] 18 | algorithm: &str, [INFO] [stdout] | ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_algorithm` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `optimizer` [INFO] [stdout] --> src/alignment.rs:19:9 [INFO] [stdout] | [INFO] [stdout] 19 | optimizer: &BinaryOptimizer, [INFO] [stdout] | ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_optimizer` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `input_path` [INFO] [stdout] --> src/variant_caller.rs:16:9 [INFO] [stdout] | [INFO] [stdout] 16 | input_path: &str, [INFO] [stdout] | ^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_input_path` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `reference` [INFO] [stdout] --> src/variant_caller.rs:17:9 [INFO] [stdout] | [INFO] [stdout] 17 | reference: &str, [INFO] [stdout] | ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_reference` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `variant_type` [INFO] [stdout] --> src/variant_caller.rs:18:9 [INFO] [stdout] | [INFO] [stdout] 18 | variant_type: &str, [INFO] [stdout] | ^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_variant_type` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `optimizer` [INFO] [stdout] --> src/variant_caller.rs:19:9 [INFO] [stdout] | [INFO] [stdout] 19 | optimizer: &BinaryOptimizer, [INFO] [stdout] | ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_optimizer` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `input_path` [INFO] [stdout] --> src/assembly.rs:20:9 [INFO] [stdout] | [INFO] [stdout] 20 | input_path: &str, [INFO] [stdout] | ^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_input_path` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `algorithm` [INFO] [stdout] --> src/assembly.rs:21:9 [INFO] [stdout] | [INFO] [stdout] 21 | algorithm: &str, [INFO] [stdout] | ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_algorithm` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `optimizer` [INFO] [stdout] --> src/assembly.rs:22:9 [INFO] [stdout] | [INFO] [stdout] 22 | optimizer: &BinaryOptimizer, [INFO] [stdout] | ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_optimizer` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `gender` [INFO] [stdout] --> src/vcf_processor.rs:117:21 [INFO] [stdout] | [INFO] [stdout] 117 | let gender = parts[3].to_string(); [INFO] [stdout] | ^^^^^^ help: if this is intentional, prefix it with an underscore: `_gender` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `gender` [INFO] [stdout] --> src/vcf_processor.rs:117:21 [INFO] [stdout] | [INFO] [stdout] 117 | let gender = parts[3].to_string(); [INFO] [stdout] | ^^^^^^ help: if this is intentional, prefix it with an underscore: `_gender` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `pop_code` [INFO] [stdout] --> src/vcf_processor.rs:228:18 [INFO] [stdout] | [INFO] [stdout] 228 | for (pop_code, population) in &self.populations { [INFO] [stdout] | ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_pop_code` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `pop_code` [INFO] [stdout] --> src/vcf_processor.rs:228:18 [INFO] [stdout] | [INFO] [stdout] 228 | for (pop_code, population) in &self.populations { [INFO] [stdout] | ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_pop_code` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct `AnalysisResult` is never constructed [INFO] [stdout] --> src/main.rs:349:8 [INFO] [stdout] | [INFO] [stdout] 349 | struct AnalysisResult { [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: fields `simd_enabled` and `cache` are never read [INFO] [stdout] --> src/dna_engine.rs:8:5 [INFO] [stdout] | [INFO] [stdout] 7 | pub struct DnaEngine { [INFO] [stdout] | --------- fields in this struct [INFO] [stdout] 8 | simd_enabled: bool, [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] 9 | cache: Arc>>, [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: multiple methods are never used [INFO] [stdout] --> src/dna_engine.rs:20:12 [INFO] [stdout] | [INFO] [stdout] 12 | impl DnaEngine { [INFO] [stdout] | -------------- methods in this implementation [INFO] [stdout] ... [INFO] [stdout] 20 | pub fn has_simd_support(&self) -> bool { [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 25 | pub fn sequence_to_binary(&self, sequence: &str) -> Vec { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 39 | pub fn binary_to_sequence(&self, binary: &[u8]) -> String { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 53 | pub fn analyze_parallel(&self, sequences: &[String]) -> Result> { [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 62 | fn analyze_sequence(&self, sequence: &str) -> Result { [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 78 | fn calculate_gc_content(&self, binary_seq: &[u8]) -> f64 { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 86 | fn calculate_complexity(&self, binary_seq: &[u8]) -> f64 { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 106 | fn find_repeats(&self, binary_seq: &[u8]) -> Vec { [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 136 | fn generate_binary_signature(&self, binary_seq: &[u8]) -> Vec { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct `AnalysisResult` is never constructed [INFO] [stdout] --> src/main.rs:349:8 [INFO] [stdout] | [INFO] [stdout] 349 | struct AnalysisResult { [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: fields `simd_enabled` and `cache` are never read [INFO] [stdout] --> src/dna_engine.rs:8:5 [INFO] [stdout] | [INFO] [stdout] 7 | pub struct DnaEngine { [INFO] [stdout] | --------- fields in this struct [INFO] [stdout] 8 | simd_enabled: bool, [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] 9 | cache: Arc>>, [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: multiple methods are never used [INFO] [stdout] --> src/dna_engine.rs:20:12 [INFO] [stdout] | [INFO] [stdout] 12 | impl DnaEngine { [INFO] [stdout] | -------------- methods in this implementation [INFO] [stdout] ... [INFO] [stdout] 20 | pub fn has_simd_support(&self) -> bool { [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 25 | pub fn sequence_to_binary(&self, sequence: &str) -> Vec { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 39 | pub fn binary_to_sequence(&self, binary: &[u8]) -> String { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 53 | pub fn analyze_parallel(&self, sequences: &[String]) -> Result> { [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 62 | fn analyze_sequence(&self, sequence: &str) -> Result { [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 78 | fn calculate_gc_content(&self, binary_seq: &[u8]) -> f64 { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 86 | fn calculate_complexity(&self, binary_seq: &[u8]) -> f64 { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 106 | fn find_repeats(&self, binary_seq: &[u8]) -> Vec { [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 136 | fn generate_binary_signature(&self, binary_seq: &[u8]) -> Vec { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct `AnalysisResult` is never constructed [INFO] [stdout] --> src/dna_engine.rs:150:12 [INFO] [stdout] | [INFO] [stdout] 150 | pub struct AnalysisResult { [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct `RepeatRegion` is never constructed [INFO] [stdout] --> src/dna_engine.rs:159:12 [INFO] [stdout] | [INFO] [stdout] 159 | pub struct RepeatRegion { [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct `Sequencer` is never constructed [INFO] [stdout] --> src/sequencer.rs:7:12 [INFO] [stdout] | [INFO] [stdout] 7 | pub struct Sequencer { [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: multiple associated items are never used [INFO] [stdout] --> src/sequencer.rs:14:12 [INFO] [stdout] | [INFO] [stdout] 13 | impl Sequencer { [INFO] [stdout] | -------------- associated items in this implementation [INFO] [stdout] 14 | pub fn new(quality_threshold: u8, max_read_length: usize) -> Result { [INFO] [stdout] | ^^^ [INFO] [stdout] ... [INFO] [stdout] 22 | pub fn enable_realtime(&mut self) { [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 27 | pub fn process_file(&self, input_path: &str, optimizer: &BinaryOptimizer) -> Result> { [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 51 | fn parse_fasta(&self, reader: BufReader, optimizer: &BinaryOptimizer) -> Result> { [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 91 | fn parse_fastq(&self, reader: BufReader, optimizer: &BinaryOptimizer) -> Result> { [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 121 | fn parse_auto_detect(&self, input_path: &str, optimizer: &BinaryOptimizer) -> Result> { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 142 | fn parse_raw_dna(&self, reader: BufReader, optimizer: &BinaryOptimizer) -> Result> { [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 162 | fn create_sequence_data( [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct `SequenceData` is never constructed [INFO] [stdout] --> src/sequencer.rs:195:12 [INFO] [stdout] | [INFO] [stdout] 195 | pub struct SequenceData { [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: methods `avg_quality`, `gc_content`, and `length` are never used [INFO] [stdout] --> src/sequencer.rs:204:12 [INFO] [stdout] | [INFO] [stdout] 203 | impl SequenceData { [INFO] [stdout] | ----------------- methods in this implementation [INFO] [stdout] 204 | pub fn avg_quality(&self) -> f64 { [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 213 | pub fn gc_content(&self) -> f64 { [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 221 | pub fn length(&self) -> usize { [INFO] [stdout] | ^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct `QualityScore` is never constructed [INFO] [stdout] --> src/sequencer.rs:227:12 [INFO] [stdout] | [INFO] [stdout] 227 | pub struct QualityScore; [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated functions `phred_to_probability` and `probability_to_phred` are never used [INFO] [stdout] --> src/sequencer.rs:230:12 [INFO] [stdout] | [INFO] [stdout] 229 | impl QualityScore { [INFO] [stdout] | ----------------- associated functions in this implementation [INFO] [stdout] 230 | pub fn phred_to_probability(phred: u8) -> f64 { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 234 | pub fn probability_to_phred(prob: f64) -> u8 { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `simd_enabled` is never read [INFO] [stdout] --> src/binary_optimizer.rs:5:5 [INFO] [stdout] | [INFO] [stdout] 4 | pub struct BinaryOptimizer { [INFO] [stdout] | --------------- field in this struct [INFO] [stdout] 5 | simd_enabled: bool, [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: multiple methods are never used [INFO] [stdout] --> src/binary_optimizer.rs:21:12 [INFO] [stdout] | [INFO] [stdout] 8 | impl BinaryOptimizer { [INFO] [stdout] | -------------------- methods in this implementation [INFO] [stdout] ... [INFO] [stdout] 21 | pub fn find_pattern(&self, sequence: &[u8], pattern: &[u8]) -> Vec { [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 29 | fn simd_pattern_search(&self, sequence: &[u8], pattern: &[u8]) -> Vec { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 46 | fn scalar_pattern_search(&self, sequence: &[u8], pattern: &[u8]) -> Vec { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 59 | pub fn compare_sequences(&self, seq1: &[u8], seq2: &[u8]) -> f64 { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 74 | pub fn count_kmers(&self, sequence: &[u8], k: usize) -> ahash::AHashMap, u32> { [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 91 | pub fn compress_sequence(&self, sequence: &[u8]) -> Vec { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 107 | pub fn decompress_sequence(&self, compressed: &[u8], original_length: usize) -> Vec { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct `SimdProcessor` is never constructed [INFO] [stdout] --> src/binary_optimizer.rs:126:12 [INFO] [stdout] | [INFO] [stdout] 126 | pub struct SimdProcessor; [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated functions `new`, `count_bases_simd`, and `analyze_quality_simd` are never used [INFO] [stdout] --> src/binary_optimizer.rs:129:12 [INFO] [stdout] | [INFO] [stdout] 128 | impl SimdProcessor { [INFO] [stdout] | ------------------ associated functions in this implementation [INFO] [stdout] 129 | pub fn new() -> Self { [INFO] [stdout] | ^^^ [INFO] [stdout] ... [INFO] [stdout] 134 | pub fn count_bases_simd(sequence: &[u8]) -> [u32; 4] { [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 148 | pub fn analyze_quality_simd(quality_scores: &[u8]) -> QualityStats { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct `QualityStats` is never constructed [INFO] [stdout] --> src/binary_optimizer.rs:163:12 [INFO] [stdout] | [INFO] [stdout] 163 | pub struct QualityStats { [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct `GeneticAnalyzer` is never constructed [INFO] [stdout] --> src/genetic_analyzer.rs:5:12 [INFO] [stdout] | [INFO] [stdout] 5 | pub struct GeneticAnalyzer { [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated items `new`, `analyze_file`, and `benchmark_analysis` are never used [INFO] [stdout] --> src/genetic_analyzer.rs:10:12 [INFO] [stdout] | [INFO] [stdout] 9 | impl GeneticAnalyzer { [INFO] [stdout] | -------------------- associated items in this implementation [INFO] [stdout] 10 | pub fn new(deep_analysis: bool) -> Result { [INFO] [stdout] | ^^^ [INFO] [stdout] ... [INFO] [stdout] 14 | pub fn analyze_file( [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 42 | pub fn benchmark_analysis( [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct `RnaProcessor` is never constructed [INFO] [stdout] --> src/rna_processor.rs:5:12 [INFO] [stdout] | [INFO] [stdout] 5 | pub struct RnaProcessor { [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated items `new` and `analyze` are never used [INFO] [stdout] --> src/rna_processor.rs:10:12 [INFO] [stdout] | [INFO] [stdout] 9 | impl RnaProcessor { [INFO] [stdout] | ----------------- associated items in this implementation [INFO] [stdout] 10 | pub fn new(temperature: f64) -> Result { [INFO] [stdout] | ^^^ [INFO] [stdout] ... [INFO] [stdout] 14 | pub fn analyze( [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct `RnaAnalysisResult` is never constructed [INFO] [stdout] --> src/rna_processor.rs:32:12 [INFO] [stdout] | [INFO] [stdout] 32 | pub struct RnaAnalysisResult { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct `AlignmentEngine` is never constructed [INFO] [stdout] --> src/alignment.rs:5:12 [INFO] [stdout] | [INFO] [stdout] 5 | pub struct AlignmentEngine { [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated items `new` and `compare_files` are never used [INFO] [stdout] --> src/alignment.rs:10:12 [INFO] [stdout] | [INFO] [stdout] 9 | impl AlignmentEngine { [INFO] [stdout] | -------------------- associated items in this implementation [INFO] [stdout] 10 | pub fn new(binary_optimized: bool) -> Result { [INFO] [stdout] | ^^^ [INFO] [stdout] ... [INFO] [stdout] 14 | pub fn compare_files( [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct `VariantCaller` is never constructed [INFO] [stdout] --> src/variant_caller.rs:5:12 [INFO] [stdout] | [INFO] [stdout] 5 | pub struct VariantCaller { [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated items `new` and `call_variants` are never used [INFO] [stdout] --> src/variant_caller.rs:10:12 [INFO] [stdout] | [INFO] [stdout] 9 | impl VariantCaller { [INFO] [stdout] | ------------------ associated items in this implementation [INFO] [stdout] 10 | pub fn new(min_coverage: u32) -> Result { [INFO] [stdout] | ^^^ [INFO] [stdout] ... [INFO] [stdout] 14 | pub fn call_variants( [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct `AssemblyEngine` is never constructed [INFO] [stdout] --> src/assembly.rs:5:12 [INFO] [stdout] | [INFO] [stdout] 5 | pub struct AssemblyEngine { [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated items `new` and `assemble` are never used [INFO] [stdout] --> src/assembly.rs:11:12 [INFO] [stdout] | [INFO] [stdout] 10 | impl AssemblyEngine { [INFO] [stdout] | ------------------- associated items in this implementation [INFO] [stdout] 11 | pub fn new(kmer_size: usize, error_correction: bool) -> Result { [INFO] [stdout] | ^^^ [INFO] [stdout] ... [INFO] [stdout] 18 | pub fn assemble( [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: fields `position` and `quality` are never read [INFO] [stdout] --> src/vcf_processor.rs:11:9 [INFO] [stdout] | [INFO] [stdout] 9 | pub struct SNPVariant { [INFO] [stdout] | ---------- fields in this struct [INFO] [stdout] 10 | pub chromosome: String, [INFO] [stdout] 11 | pub position: u64, [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 15 | pub quality: f64, [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `SNPVariant` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `region` is never read [INFO] [stdout] --> src/vcf_processor.rs:24:9 [INFO] [stdout] | [INFO] [stdout] 20 | pub struct Population { [INFO] [stdout] | ---------- field in this struct [INFO] [stdout] ... [INFO] [stdout] 24 | pub region: String, [INFO] [stdout] | ^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `Population` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct `AnalysisResult` is never constructed [INFO] [stdout] --> src/dna_engine.rs:150:12 [INFO] [stdout] | [INFO] [stdout] 150 | pub struct AnalysisResult { [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct `RepeatRegion` is never constructed [INFO] [stdout] --> src/dna_engine.rs:159:12 [INFO] [stdout] | [INFO] [stdout] 159 | pub struct RepeatRegion { [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct `Sequencer` is never constructed [INFO] [stdout] --> src/sequencer.rs:7:12 [INFO] [stdout] | [INFO] [stdout] 7 | pub struct Sequencer { [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: multiple associated items are never used [INFO] [stdout] --> src/sequencer.rs:14:12 [INFO] [stdout] | [INFO] [stdout] 13 | impl Sequencer { [INFO] [stdout] | -------------- associated items in this implementation [INFO] [stdout] 14 | pub fn new(quality_threshold: u8, max_read_length: usize) -> Result { [INFO] [stdout] | ^^^ [INFO] [stdout] ... [INFO] [stdout] 22 | pub fn enable_realtime(&mut self) { [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 27 | pub fn process_file(&self, input_path: &str, optimizer: &BinaryOptimizer) -> Result> { [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 51 | fn parse_fasta(&self, reader: BufReader, optimizer: &BinaryOptimizer) -> Result> { [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 91 | fn parse_fastq(&self, reader: BufReader, optimizer: &BinaryOptimizer) -> Result> { [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 121 | fn parse_auto_detect(&self, input_path: &str, optimizer: &BinaryOptimizer) -> Result> { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 142 | fn parse_raw_dna(&self, reader: BufReader, optimizer: &BinaryOptimizer) -> Result> { [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 162 | fn create_sequence_data( [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct `SequenceData` is never constructed [INFO] [stdout] --> src/sequencer.rs:195:12 [INFO] [stdout] | [INFO] [stdout] 195 | pub struct SequenceData { [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: methods `avg_quality`, `gc_content`, and `length` are never used [INFO] [stdout] --> src/sequencer.rs:204:12 [INFO] [stdout] | [INFO] [stdout] 203 | impl SequenceData { [INFO] [stdout] | ----------------- methods in this implementation [INFO] [stdout] 204 | pub fn avg_quality(&self) -> f64 { [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 213 | pub fn gc_content(&self) -> f64 { [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 221 | pub fn length(&self) -> usize { [INFO] [stdout] | ^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct `QualityScore` is never constructed [INFO] [stdout] --> src/sequencer.rs:227:12 [INFO] [stdout] | [INFO] [stdout] 227 | pub struct QualityScore; [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated functions `phred_to_probability` and `probability_to_phred` are never used [INFO] [stdout] --> src/sequencer.rs:230:12 [INFO] [stdout] | [INFO] [stdout] 229 | impl QualityScore { [INFO] [stdout] | ----------------- associated functions in this implementation [INFO] [stdout] 230 | pub fn phred_to_probability(phred: u8) -> f64 { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 234 | pub fn probability_to_phred(prob: f64) -> u8 { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `simd_enabled` is never read [INFO] [stdout] --> src/binary_optimizer.rs:5:5 [INFO] [stdout] | [INFO] [stdout] 4 | pub struct BinaryOptimizer { [INFO] [stdout] | --------------- field in this struct [INFO] [stdout] 5 | simd_enabled: bool, [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: multiple methods are never used [INFO] [stdout] --> src/binary_optimizer.rs:21:12 [INFO] [stdout] | [INFO] [stdout] 8 | impl BinaryOptimizer { [INFO] [stdout] | -------------------- methods in this implementation [INFO] [stdout] ... [INFO] [stdout] 21 | pub fn find_pattern(&self, sequence: &[u8], pattern: &[u8]) -> Vec { [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 29 | fn simd_pattern_search(&self, sequence: &[u8], pattern: &[u8]) -> Vec { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 46 | fn scalar_pattern_search(&self, sequence: &[u8], pattern: &[u8]) -> Vec { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 59 | pub fn compare_sequences(&self, seq1: &[u8], seq2: &[u8]) -> f64 { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 74 | pub fn count_kmers(&self, sequence: &[u8], k: usize) -> ahash::AHashMap, u32> { [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 91 | pub fn compress_sequence(&self, sequence: &[u8]) -> Vec { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 107 | pub fn decompress_sequence(&self, compressed: &[u8], original_length: usize) -> Vec { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct `SimdProcessor` is never constructed [INFO] [stdout] --> src/binary_optimizer.rs:126:12 [INFO] [stdout] | [INFO] [stdout] 126 | pub struct SimdProcessor; [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated functions `new`, `count_bases_simd`, and `analyze_quality_simd` are never used [INFO] [stdout] --> src/binary_optimizer.rs:129:12 [INFO] [stdout] | [INFO] [stdout] 128 | impl SimdProcessor { [INFO] [stdout] | ------------------ associated functions in this implementation [INFO] [stdout] 129 | pub fn new() -> Self { [INFO] [stdout] | ^^^ [INFO] [stdout] ... [INFO] [stdout] 134 | pub fn count_bases_simd(sequence: &[u8]) -> [u32; 4] { [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 148 | pub fn analyze_quality_simd(quality_scores: &[u8]) -> QualityStats { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct `QualityStats` is never constructed [INFO] [stdout] --> src/binary_optimizer.rs:163:12 [INFO] [stdout] | [INFO] [stdout] 163 | pub struct QualityStats { [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct `GeneticAnalyzer` is never constructed [INFO] [stdout] --> src/genetic_analyzer.rs:5:12 [INFO] [stdout] | [INFO] [stdout] 5 | pub struct GeneticAnalyzer { [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated items `new`, `analyze_file`, and `benchmark_analysis` are never used [INFO] [stdout] --> src/genetic_analyzer.rs:10:12 [INFO] [stdout] | [INFO] [stdout] 9 | impl GeneticAnalyzer { [INFO] [stdout] | -------------------- associated items in this implementation [INFO] [stdout] 10 | pub fn new(deep_analysis: bool) -> Result { [INFO] [stdout] | ^^^ [INFO] [stdout] ... [INFO] [stdout] 14 | pub fn analyze_file( [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 42 | pub fn benchmark_analysis( [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct `RnaProcessor` is never constructed [INFO] [stdout] --> src/rna_processor.rs:5:12 [INFO] [stdout] | [INFO] [stdout] 5 | pub struct RnaProcessor { [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated items `new` and `analyze` are never used [INFO] [stdout] --> src/rna_processor.rs:10:12 [INFO] [stdout] | [INFO] [stdout] 9 | impl RnaProcessor { [INFO] [stdout] | ----------------- associated items in this implementation [INFO] [stdout] 10 | pub fn new(temperature: f64) -> Result { [INFO] [stdout] | ^^^ [INFO] [stdout] ... [INFO] [stdout] 14 | pub fn analyze( [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct `RnaAnalysisResult` is never constructed [INFO] [stdout] --> src/rna_processor.rs:32:12 [INFO] [stdout] | [INFO] [stdout] 32 | pub struct RnaAnalysisResult { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct `AlignmentEngine` is never constructed [INFO] [stdout] --> src/alignment.rs:5:12 [INFO] [stdout] | [INFO] [stdout] 5 | pub struct AlignmentEngine { [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated items `new` and `compare_files` are never used [INFO] [stdout] --> src/alignment.rs:10:12 [INFO] [stdout] | [INFO] [stdout] 9 | impl AlignmentEngine { [INFO] [stdout] | -------------------- associated items in this implementation [INFO] [stdout] 10 | pub fn new(binary_optimized: bool) -> Result { [INFO] [stdout] | ^^^ [INFO] [stdout] ... [INFO] [stdout] 14 | pub fn compare_files( [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct `VariantCaller` is never constructed [INFO] [stdout] --> src/variant_caller.rs:5:12 [INFO] [stdout] | [INFO] [stdout] 5 | pub struct VariantCaller { [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated items `new` and `call_variants` are never used [INFO] [stdout] --> src/variant_caller.rs:10:12 [INFO] [stdout] | [INFO] [stdout] 9 | impl VariantCaller { [INFO] [stdout] | ------------------ associated items in this implementation [INFO] [stdout] 10 | pub fn new(min_coverage: u32) -> Result { [INFO] [stdout] | ^^^ [INFO] [stdout] ... [INFO] [stdout] 14 | pub fn call_variants( [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct `AssemblyEngine` is never constructed [INFO] [stdout] --> src/assembly.rs:5:12 [INFO] [stdout] | [INFO] [stdout] 5 | pub struct AssemblyEngine { [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated items `new` and `assemble` are never used [INFO] [stdout] --> src/assembly.rs:11:12 [INFO] [stdout] | [INFO] [stdout] 10 | impl AssemblyEngine { [INFO] [stdout] | ------------------- associated items in this implementation [INFO] [stdout] 11 | pub fn new(kmer_size: usize, error_correction: bool) -> Result { [INFO] [stdout] | ^^^ [INFO] [stdout] ... [INFO] [stdout] 18 | pub fn assemble( [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: fields `position` and `quality` are never read [INFO] [stdout] --> src/vcf_processor.rs:11:9 [INFO] [stdout] | [INFO] [stdout] 9 | pub struct SNPVariant { [INFO] [stdout] | ---------- fields in this struct [INFO] [stdout] 10 | pub chromosome: String, [INFO] [stdout] 11 | pub position: u64, [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 15 | pub quality: f64, [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `SNPVariant` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `region` is never read [INFO] [stdout] --> src/vcf_processor.rs:24:9 [INFO] [stdout] | [INFO] [stdout] 20 | pub struct Population { [INFO] [stdout] | ---------- field in this struct [INFO] [stdout] ... [INFO] [stdout] 24 | pub region: String, [INFO] [stdout] | ^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `Population` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: fields `memory_mb` and `cpu_percent` are never read [INFO] [stdout] --> src/benchmark.rs:13:9 [INFO] [stdout] | [INFO] [stdout] 8 | pub struct BenchmarkResult { [INFO] [stdout] | --------------- fields in this struct [INFO] [stdout] ... [INFO] [stdout] 13 | pub memory_mb: f64, [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] 14 | pub cpu_percent: f64, [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `BenchmarkResult` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: fields `reference` and `alternate` are never read [INFO] [stdout] --> src/raw_converter.rs:35:9 [INFO] [stdout] | [INFO] [stdout] 30 | pub struct SnpData { [INFO] [stdout] | ------- fields in this struct [INFO] [stdout] ... [INFO] [stdout] 35 | pub reference: Option, [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] 36 | pub alternate: Option, [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `SnpData` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: fields `memory_mb` and `cpu_percent` are never read [INFO] [stdout] --> src/benchmark.rs:13:9 [INFO] [stdout] | [INFO] [stdout] 8 | pub struct BenchmarkResult { [INFO] [stdout] | --------------- fields in this struct [INFO] [stdout] ... [INFO] [stdout] 13 | pub memory_mb: f64, [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] 14 | pub cpu_percent: f64, [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `BenchmarkResult` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `output_compression` is never read [INFO] [stdout] --> src/raw_converter.rs:43:9 [INFO] [stdout] | [INFO] [stdout] 40 | pub struct RawDnaConverter { [INFO] [stdout] | --------------- field in this struct [INFO] [stdout] ... [INFO] [stdout] 43 | pub output_compression: bool, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `RawDnaConverter` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: fields `reference` and `alternate` are never read [INFO] [stdout] --> src/raw_converter.rs:35:9 [INFO] [stdout] | [INFO] [stdout] 30 | pub struct SnpData { [INFO] [stdout] | ------- fields in this struct [INFO] [stdout] ... [INFO] [stdout] 35 | pub reference: Option, [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] 36 | pub alternate: Option, [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `SnpData` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `extraction_method` is never read [INFO] [stdout] --> src/diy_dna.rs:19:9 [INFO] [stdout] | [INFO] [stdout] 17 | pub struct DiyDnaExtractor { [INFO] [stdout] | --------------- field in this struct [INFO] [stdout] 18 | pub sample_name: String, [INFO] [stdout] 19 | pub extraction_method: String, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `DiyDnaExtractor` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `output_compression` is never read [INFO] [stdout] --> src/raw_converter.rs:43:9 [INFO] [stdout] | [INFO] [stdout] 40 | pub struct RawDnaConverter { [INFO] [stdout] | --------------- field in this struct [INFO] [stdout] ... [INFO] [stdout] 43 | pub output_compression: bool, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `RawDnaConverter` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `extraction_method` is never read [INFO] [stdout] --> src/diy_dna.rs:19:9 [INFO] [stdout] | [INFO] [stdout] 17 | pub struct DiyDnaExtractor { [INFO] [stdout] | --------------- field in this struct [INFO] [stdout] 18 | pub sample_name: String, [INFO] [stdout] 19 | pub extraction_method: String, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `DiyDnaExtractor` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [optimized + debuginfo] target(s) in 8m 47s [INFO] running `Command { std: "docker" "inspect" "c6843f8c0c17b2df27b34e140bd89638358a61a70b1e9429b11d48d239b6da1a", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "c6843f8c0c17b2df27b34e140bd89638358a61a70b1e9429b11d48d239b6da1a", kill_on_drop: false }` [INFO] [stdout] c6843f8c0c17b2df27b34e140bd89638358a61a70b1e9429b11d48d239b6da1a