[INFO] cloning repository https://github.com/bioforensics/mhrs [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/bioforensics/mhrs" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fbioforensics%2Fmhrs", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fbioforensics%2Fmhrs'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 7bb946a0170bba0b2b6212f7eb1dc96e0e3777ec [INFO] checking bioforensics/mhrs/7bb946a0170bba0b2b6212f7eb1dc96e0e3777ec against master#3f6250a7bb79e600d9036bbc7c8f65af43933643 for pr-147859 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fbioforensics%2Fmhrs" "/workspace/builds/worker-2-tc1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-2-tc1/source'... [INFO] [stderr] done. [INFO] started tweaking git repo https://github.com/bioforensics/mhrs [INFO] finished tweaking git repo https://github.com/bioforensics/mhrs [INFO] tweaked toml for git repo https://github.com/bioforensics/mhrs written to /workspace/builds/worker-2-tc1/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/bioforensics/mhrs on toolchain 3f6250a7bb79e600d9036bbc7c8f65af43933643 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+3f6250a7bb79e600d9036bbc7c8f65af43933643" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/bioforensics/mhrs already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+3f6250a7bb79e600d9036bbc7c8f65af43933643" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded bio-types v1.0.1 [INFO] [stderr] Downloaded counter v0.5.7 [INFO] [stderr] Downloaded openssl-sys v0.9.101 [INFO] [stderr] Downloaded rust-htslib v0.46.0 [INFO] [stderr] Downloaded hts-sys v2.1.1 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:61361fe0aef631f17e9d025a70c5a647956f8c671dd02950a60ad3f5cc5526d7" "/opt/rustwide/cargo-home/bin/cargo" "+3f6250a7bb79e600d9036bbc7c8f65af43933643" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] bf9360f9e2061f2aa42b2e2683814224d8f8e63250beeb699d722334573b2eaa [INFO] running `Command { std: "docker" "start" "-a" "bf9360f9e2061f2aa42b2e2683814224d8f8e63250beeb699d722334573b2eaa", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "bf9360f9e2061f2aa42b2e2683814224d8f8e63250beeb699d722334573b2eaa", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "bf9360f9e2061f2aa42b2e2683814224d8f8e63250beeb699d722334573b2eaa", kill_on_drop: false }` [INFO] [stdout] bf9360f9e2061f2aa42b2e2683814224d8f8e63250beeb699d722334573b2eaa [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:61361fe0aef631f17e9d025a70c5a647956f8c671dd02950a60ad3f5cc5526d7" "/opt/rustwide/cargo-home/bin/cargo" "+3f6250a7bb79e600d9036bbc7c8f65af43933643" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 1dda694000e4b0a2d9d0ec2644ddecec595eba32a91bd74588dfc6be32002cab [INFO] running `Command { std: "docker" "start" "-a" "1dda694000e4b0a2d9d0ec2644ddecec595eba32a91bd74588dfc6be32002cab", kill_on_drop: false }` [INFO] [stderr] Compiling syn v2.0.52 [INFO] [stderr] Checking memchr v2.7.1 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Compiling jobserver v0.1.28 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling glob v0.3.1 [INFO] [stderr] Checking regex-syntax v0.8.2 [INFO] [stderr] Compiling thiserror v1.0.57 [INFO] [stderr] Compiling fs-utils v1.1.4 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling serde v1.0.197 [INFO] [stderr] Compiling syn v1.0.109 [INFO] [stderr] Checking unicode-normalization v0.1.23 [INFO] [stderr] Checking anstyle-query v1.1.1 [INFO] [stderr] Compiling cc v1.0.89 [INFO] [stderr] Checking smallvec v1.15.0 [INFO] [stderr] Checking anstream v0.6.15 [INFO] [stderr] Checking aho-corasick v1.1.2 [INFO] [stderr] Checking csv-core v0.1.11 [INFO] [stderr] Checking clap_builder v4.5.35 [INFO] [stderr] Checking idna v0.5.0 [INFO] [stderr] Checking linear-map v1.2.0 [INFO] [stderr] Checking ieee754 v0.2.6 [INFO] [stderr] Checking custom_derive v0.1.7 [INFO] [stderr] Checking itertools v0.10.5 [INFO] [stderr] Compiling cmake v0.1.50 [INFO] [stderr] Compiling openssl-src v300.2.3+3.2.1 [INFO] [stderr] Checking url v2.5.0 [INFO] [stderr] Checking counter v0.5.7 [INFO] [stderr] Checking regex-automata v0.4.6 [INFO] [stderr] Compiling libz-sys v1.1.15 [INFO] [stderr] Compiling openssl-sys v0.9.101 [INFO] [stderr] Compiling bzip2-sys v0.1.11+1.0.8 [INFO] [stderr] Compiling curl-sys v0.4.72+curl-8.6.0 [INFO] [stderr] Compiling lzma-sys v0.1.20 [INFO] [stderr] Compiling hts-sys v2.1.1 [INFO] [stderr] Compiling derive-new v0.5.9 [INFO] [stderr] Checking regex v1.10.3 [INFO] [stderr] Compiling synstructure v0.13.1 [INFO] [stderr] Compiling zerofrom-derive v0.1.6 [INFO] [stderr] Compiling yoke-derive v0.7.5 [INFO] [stderr] Compiling zerovec-derive v0.10.3 [INFO] [stderr] Compiling displaydoc v0.2.5 [INFO] [stderr] Compiling icu_provider_macros v1.5.0 [INFO] [stderr] Compiling serde_derive v1.0.197 [INFO] [stderr] Compiling thiserror-impl v1.0.57 [INFO] [stderr] Compiling strum_macros v0.25.3 [INFO] [stderr] Compiling clap_derive v4.5.32 [INFO] [stderr] Checking bio-types v1.0.1 [INFO] [stderr] Checking zerofrom v0.1.6 [INFO] [stderr] Checking yoke v0.7.5 [INFO] [stderr] Checking zerovec v0.10.4 [INFO] [stderr] Checking clap v4.5.35 [INFO] [stderr] Checking tinystr v0.7.6 [INFO] [stderr] Checking icu_collections v1.5.0 [INFO] [stderr] Checking icu_locid v1.5.0 [INFO] [stderr] Checking icu_provider v1.5.0 [INFO] [stderr] Checking icu_locid_transform v1.5.0 [INFO] [stderr] Checking icu_properties v1.5.1 [INFO] [stderr] Checking serde_json v1.0.140 [INFO] [stderr] Checking csv v1.3.0 [INFO] [stderr] Checking icu_normalizer v1.5.0 [INFO] [stderr] Checking idna_adapter v1.2.0 [INFO] [stderr] Checking idna v1.0.3 [INFO] [stderr] Checking rust-htslib v0.46.0 [INFO] [stderr] Checking mhrs v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> src/panel.rs:42:17 [INFO] [stdout] | [INFO] [stdout] 42 | pub fn iter(&self) -> hash_map::Iter { [INFO] [stdout] | ^^^^^ ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 42 | pub fn iter(&self) -> hash_map::Iter<'_, String, AlleleDefinition> { [INFO] [stdout] | +++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> src/panel.rs:42:17 [INFO] [stdout] | [INFO] [stdout] 42 | pub fn iter(&self) -> hash_map::Iter { [INFO] [stdout] | ^^^^^ ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 42 | pub fn iter(&self) -> hash_map::Iter<'_, String, AlleleDefinition> { [INFO] [stdout] | +++ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 5m 00s [INFO] running `Command { std: "docker" "inspect" "1dda694000e4b0a2d9d0ec2644ddecec595eba32a91bd74588dfc6be32002cab", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "1dda694000e4b0a2d9d0ec2644ddecec595eba32a91bd74588dfc6be32002cab", kill_on_drop: false }` [INFO] [stdout] 1dda694000e4b0a2d9d0ec2644ddecec595eba32a91bd74588dfc6be32002cab