[INFO] cloning repository https://github.com/ARU-life-sciences/extract_nhmmer_tblout
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/ARU-life-sciences/extract_nhmmer_tblout" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FARU-life-sciences%2Fextract_nhmmer_tblout", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FARU-life-sciences%2Fextract_nhmmer_tblout'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] b463b611c347c1f23d68f2061296df531711728f
[INFO] checking ARU-life-sciences/extract_nhmmer_tblout against master#3f6250a7bb79e600d9036bbc7c8f65af43933643 for pr-147859
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FARU-life-sciences%2Fextract_nhmmer_tblout" "/workspace/builds/worker-3-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-3-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/ARU-life-sciences/extract_nhmmer_tblout
[INFO] finished tweaking git repo https://github.com/ARU-life-sciences/extract_nhmmer_tblout
[INFO] tweaked toml for git repo https://github.com/ARU-life-sciences/extract_nhmmer_tblout written to /workspace/builds/worker-3-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/ARU-life-sciences/extract_nhmmer_tblout on toolchain 3f6250a7bb79e600d9036bbc7c8f65af43933643
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+3f6250a7bb79e600d9036bbc7c8f65af43933643" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/ARU-life-sciences/extract_nhmmer_tblout already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+3f6250a7bb79e600d9036bbc7c8f65af43933643" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded noodles-fasta v0.37.0
[INFO] [stderr]   Downloaded noodles-core v0.15.0
[INFO] [stderr]   Downloaded hmm_tblout v0.2.1
[INFO] [stderr]   Downloaded noodles-bgzf v0.29.0
[INFO] [stderr]   Downloaded anyhow v1.0.82
[INFO] [stderr]   Downloaded bstr v1.9.1
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:61361fe0aef631f17e9d025a70c5a647956f8c671dd02950a60ad3f5cc5526d7" "/opt/rustwide/cargo-home/bin/cargo" "+3f6250a7bb79e600d9036bbc7c8f65af43933643" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 9fa57a50a0bb0511b496600195ea718119ce2a5313a358a73f46a11f9eaacac3
[INFO] running `Command { std: "docker" "start" "-a" "9fa57a50a0bb0511b496600195ea718119ce2a5313a358a73f46a11f9eaacac3", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "9fa57a50a0bb0511b496600195ea718119ce2a5313a358a73f46a11f9eaacac3", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "9fa57a50a0bb0511b496600195ea718119ce2a5313a358a73f46a11f9eaacac3", kill_on_drop: false }`
[INFO] [stdout] 9fa57a50a0bb0511b496600195ea718119ce2a5313a358a73f46a11f9eaacac3
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:61361fe0aef631f17e9d025a70c5a647956f8c671dd02950a60ad3f5cc5526d7" "/opt/rustwide/cargo-home/bin/cargo" "+3f6250a7bb79e600d9036bbc7c8f65af43933643" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 5c7cad7d8cc4f806fe3082366ad13a087978c854ffd0e55b8a18a5e8f7215632
[INFO] running `Command { std: "docker" "start" "-a" "5c7cad7d8cc4f806fe3082366ad13a087978c854ffd0e55b8a18a5e8f7215632", kill_on_drop: false }`
[INFO] [stderr]    Compiling crc32fast v1.4.0
[INFO] [stderr]    Compiling crossbeam-utils v0.8.19
[INFO] [stderr]    Compiling rustix v0.38.34
[INFO] [stderr]     Checking memchr v2.7.2
[INFO] [stderr]     Checking linux-raw-sys v0.4.13
[INFO] [stderr]    Compiling anyhow v1.0.82
[INFO] [stderr]     Checking hmm_tblout v0.2.1
[INFO] [stderr]     Checking clap_builder v4.5.2
[INFO] [stderr]     Checking flate2 v1.1.2
[INFO] [stderr]     Checking bstr v1.9.1
[INFO] [stderr]     Checking crossbeam-channel v0.5.12
[INFO] [stderr]     Checking noodles-core v0.15.0
[INFO] [stderr]     Checking noodles-bgzf v0.29.0
[INFO] [stderr]     Checking noodles-fasta v0.37.0
[INFO] [stderr]     Checking clap v4.5.4
[INFO] [stderr]     Checking tempfile v3.10.1
[INFO] [stderr]     Checking extract_nhmmer_tblout v0.1.31 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 2.57s
[INFO] running `Command { std: "docker" "inspect" "5c7cad7d8cc4f806fe3082366ad13a087978c854ffd0e55b8a18a5e8f7215632", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "5c7cad7d8cc4f806fe3082366ad13a087978c854ffd0e55b8a18a5e8f7215632", kill_on_drop: false }`
[INFO] [stdout] 5c7cad7d8cc4f806fe3082366ad13a087978c854ffd0e55b8a18a5e8f7215632
