[INFO] fetching crate rvdna 0.1.0...
[INFO] checking rvdna-0.1.0 against master#3f6250a7bb79e600d9036bbc7c8f65af43933643 for pr-147859
[INFO] extracting crate rvdna 0.1.0 into /workspace/builds/worker-5-tc1/source
[INFO] started tweaking crates.io crate rvdna 0.1.0
[INFO] removed 0 missing tests
[INFO] finished tweaking crates.io crate rvdna 0.1.0
[INFO] tweaked toml for crates.io crate rvdna 0.1.0 written to /workspace/builds/worker-5-tc1/source/Cargo.toml
[INFO] validating manifest of crates.io crate rvdna 0.1.0 on toolchain 3f6250a7bb79e600d9036bbc7c8f65af43933643
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+3f6250a7bb79e600d9036bbc7c8f65af43933643" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate rvdna 0.1.0 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+3f6250a7bb79e600d9036bbc7c8f65af43933643" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
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[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:61361fe0aef631f17e9d025a70c5a647956f8c671dd02950a60ad3f5cc5526d7" "/opt/rustwide/cargo-home/bin/cargo" "+3f6250a7bb79e600d9036bbc7c8f65af43933643" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
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[INFO] [stdout] warning: unused import: `QualityScore`
[INFO] [stdout]   --> src/rvdna.rs:40:45
[INFO] [stdout]    |
[INFO] [stdout] 40 | use crate::types::{DnaSequence, Nucleotide, QualityScore};
[INFO] [stdout]    |                                             ^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: ambiguous glob re-exports
[INFO] [stdout]   --> src/lib.rs:63:13
[INFO] [stdout]    |
[INFO] [stdout] 63 |     pub use crate::kmer::*;
[INFO] [stdout]    |             ^^^^^^^^^^^^^^ the name `KmerIndex` in the type namespace is first re-exported here
[INFO] [stdout] ...
[INFO] [stdout] 66 |     pub use crate::types::*;
[INFO] [stdout]    |             --------------- but the name `KmerIndex` in the type namespace is also re-exported here
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(ambiguous_glob_reexports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `QualityScore`
[INFO] [stdout]   --> src/rvdna.rs:40:45
[INFO] [stdout]    |
[INFO] [stdout] 40 | use crate::types::{DnaSequence, Nucleotide, QualityScore};
[INFO] [stdout]    |                                             ^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: ambiguous glob re-exports
[INFO] [stdout]   --> src/lib.rs:63:13
[INFO] [stdout]    |
[INFO] [stdout] 63 |     pub use crate::kmer::*;
[INFO] [stdout]    |             ^^^^^^^^^^^^^^ the name `KmerIndex` in the type namespace is first re-exported here
[INFO] [stdout] ...
[INFO] [stdout] 66 |     pub use crate::types::*;
[INFO] [stdout]    |             --------------- but the name `KmerIndex` in the type namespace is also re-exported here
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(ambiguous_glob_reexports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `next_ref_bases`
[INFO] [stdout]    --> src/variant.rs:169:9
[INFO] [stdout]     |
[INFO] [stdout] 169 |         next_ref_bases: &[u8],
[INFO] [stdout]     |         ^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_next_ref_bases`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `next_ref_bases`
[INFO] [stdout]    --> src/variant.rs:169:9
[INFO] [stdout]     |
[INFO] [stdout] 169 |         next_ref_bases: &[u8],
[INFO] [stdout]     |         ^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_next_ref_bases`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `hash_kmer` is never used
[INFO] [stdout]    --> src/kmer.rs:169:8
[INFO] [stdout]     |
[INFO] [stdout]  70 | impl KmerEncoder {
[INFO] [stdout]     | ---------------- method in this implementation
[INFO] [stdout] ...
[INFO] [stdout] 169 |     fn hash_kmer(&self, kmer: &[u8]) -> usize {
[INFO] [stdout]     |        ^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/error.rs:38:25
[INFO] [stdout]    |
[INFO] [stdout] 38 |     DimensionMismatch { expected: usize, actual: usize },
[INFO] [stdout]    |                         ^^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout] note: the lint level is defined here
[INFO] [stdout]   --> src/lib.rs:16:9
[INFO] [stdout]    |
[INFO] [stdout] 16 | #![warn(missing_docs)]
[INFO] [stdout]    |         ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/error.rs:38:42
[INFO] [stdout]    |
[INFO] [stdout] 38 |     DimensionMismatch { expected: usize, actual: usize },
[INFO] [stdout]    |                                          ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/types.rs:391:9
[INFO] [stdout]     |
[INFO] [stdout] 391 |         position: GenomicPosition,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/types.rs:392:9
[INFO] [stdout]     |
[INFO] [stdout] 392 |         quality: QualityScore,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/types.rs:396:9
[INFO] [stdout]     |
[INFO] [stdout] 396 |         position: GenomicPosition,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/types.rs:397:9
[INFO] [stdout]     |
[INFO] [stdout] 397 |         inserted_bases: DnaSequence,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/types.rs:398:9
[INFO] [stdout]     |
[INFO] [stdout] 398 |         quality: QualityScore,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/types.rs:402:9
[INFO] [stdout]     |
[INFO] [stdout] 402 |         position: GenomicPosition,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/types.rs:403:9
[INFO] [stdout]     |
[INFO] [stdout] 403 |         deleted_length: usize,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/types.rs:404:9
[INFO] [stdout]     |
[INFO] [stdout] 404 |         quality: QualityScore,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/types.rs:408:9
[INFO] [stdout]     |
[INFO] [stdout] 408 |         chromosome: u8,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/types.rs:409:9
[INFO] [stdout]     |
[INFO] [stdout] 409 |         start: u64,
[INFO] [stdout]     |         ^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/types.rs:410:9
[INFO] [stdout]     |
[INFO] [stdout] 410 |         end: u64,
[INFO] [stdout]     |         ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/types.rs:411:9
[INFO] [stdout]     |
[INFO] [stdout] 411 |         variant_type: String,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/types.rs:412:9
[INFO] [stdout]     |
[INFO] [stdout] 412 |         quality: QualityScore,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:447:5
[INFO] [stdout]     |
[INFO] [stdout] 447 |     A, C, D, E, F, G, H, I, K, L,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:447:8
[INFO] [stdout]     |
[INFO] [stdout] 447 |     A, C, D, E, F, G, H, I, K, L,
[INFO] [stdout]     |        ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:447:11
[INFO] [stdout]     |
[INFO] [stdout] 447 |     A, C, D, E, F, G, H, I, K, L,
[INFO] [stdout]     |           ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:447:14
[INFO] [stdout]     |
[INFO] [stdout] 447 |     A, C, D, E, F, G, H, I, K, L,
[INFO] [stdout]     |              ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:447:17
[INFO] [stdout]     |
[INFO] [stdout] 447 |     A, C, D, E, F, G, H, I, K, L,
[INFO] [stdout]     |                 ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:447:20
[INFO] [stdout]     |
[INFO] [stdout] 447 |     A, C, D, E, F, G, H, I, K, L,
[INFO] [stdout]     |                    ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:447:23
[INFO] [stdout]     |
[INFO] [stdout] 447 |     A, C, D, E, F, G, H, I, K, L,
[INFO] [stdout]     |                       ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:447:26
[INFO] [stdout]     |
[INFO] [stdout] 447 |     A, C, D, E, F, G, H, I, K, L,
[INFO] [stdout]     |                          ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:447:29
[INFO] [stdout]     |
[INFO] [stdout] 447 |     A, C, D, E, F, G, H, I, K, L,
[INFO] [stdout]     |                             ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:447:32
[INFO] [stdout]     |
[INFO] [stdout] 447 |     A, C, D, E, F, G, H, I, K, L,
[INFO] [stdout]     |                                ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:448:5
[INFO] [stdout]     |
[INFO] [stdout] 448 |     M, N, P, Q, R, S, T, V, W, Y,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:448:8
[INFO] [stdout]     |
[INFO] [stdout] 448 |     M, N, P, Q, R, S, T, V, W, Y,
[INFO] [stdout]     |        ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:448:11
[INFO] [stdout]     |
[INFO] [stdout] 448 |     M, N, P, Q, R, S, T, V, W, Y,
[INFO] [stdout]     |           ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:448:14
[INFO] [stdout]     |
[INFO] [stdout] 448 |     M, N, P, Q, R, S, T, V, W, Y,
[INFO] [stdout]     |              ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:448:17
[INFO] [stdout]     |
[INFO] [stdout] 448 |     M, N, P, Q, R, S, T, V, W, Y,
[INFO] [stdout]     |                 ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:448:20
[INFO] [stdout]     |
[INFO] [stdout] 448 |     M, N, P, Q, R, S, T, V, W, Y,
[INFO] [stdout]     |                    ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:448:23
[INFO] [stdout]     |
[INFO] [stdout] 448 |     M, N, P, Q, R, S, T, V, W, Y,
[INFO] [stdout]     |                       ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:448:26
[INFO] [stdout]     |
[INFO] [stdout] 448 |     M, N, P, Q, R, S, T, V, W, Y,
[INFO] [stdout]     |                          ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:448:29
[INFO] [stdout]     |
[INFO] [stdout] 448 |     M, N, P, Q, R, S, T, V, W, Y,
[INFO] [stdout]     |                             ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:448:32
[INFO] [stdout]     |
[INFO] [stdout] 448 |     M, N, P, Q, R, S, T, V, W, Y,
[INFO] [stdout]     |                                ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for an enum
[INFO] [stdout]   --> src/kmer.rs:15:1
[INFO] [stdout]    |
[INFO] [stdout] 15 | pub enum KmerError {
[INFO] [stdout]    | ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]   --> src/kmer.rs:17:5
[INFO] [stdout]    |
[INFO] [stdout] 17 |     InvalidKmerLength(usize),
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]   --> src/kmer.rs:19:5
[INFO] [stdout]    |
[INFO] [stdout] 19 |     InvalidSequence(String),
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]   --> src/kmer.rs:21:5
[INFO] [stdout]    |
[INFO] [stdout] 21 |     DatabaseError(#[from] ruvector_core::RuvectorError),
[INFO] [stdout]    |     ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]   --> src/kmer.rs:23:5
[INFO] [stdout]    |
[INFO] [stdout] 23 |     EmptySequence,
[INFO] [stdout]    |     ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/kmer.rs:296:5
[INFO] [stdout]     |
[INFO] [stdout] 296 |     pub id: String,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/kmer.rs:297:5
[INFO] [stdout]     |
[INFO] [stdout] 297 |     pub score: f32,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/kmer.rs:298:5
[INFO] [stdout]     |
[INFO] [stdout] 298 |     pub distance: f32,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `nucleotide_to_bits` is never used
[INFO] [stdout]   --> src/kmer.rs:30:4
[INFO] [stdout]    |
[INFO] [stdout] 30 | fn nucleotide_to_bits(nuc: u8) -> Option<u8> {
[INFO] [stdout]    |    ^^^^^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `hash_kmer` is never used
[INFO] [stdout]    --> src/kmer.rs:169:8
[INFO] [stdout]     |
[INFO] [stdout]  70 | impl KmerEncoder {
[INFO] [stdout]     | ---------------- method in this implementation
[INFO] [stdout] ...
[INFO] [stdout] 169 |     fn hash_kmer(&self, kmer: &[u8]) -> usize {
[INFO] [stdout]     |        ^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/error.rs:38:25
[INFO] [stdout]    |
[INFO] [stdout] 38 |     DimensionMismatch { expected: usize, actual: usize },
[INFO] [stdout]    |                         ^^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout] note: the lint level is defined here
[INFO] [stdout]   --> src/lib.rs:16:9
[INFO] [stdout]    |
[INFO] [stdout] 16 | #![warn(missing_docs)]
[INFO] [stdout]    |         ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]   --> src/error.rs:38:42
[INFO] [stdout]    |
[INFO] [stdout] 38 |     DimensionMismatch { expected: usize, actual: usize },
[INFO] [stdout]    |                                          ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/types.rs:391:9
[INFO] [stdout]     |
[INFO] [stdout] 391 |         position: GenomicPosition,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/types.rs:392:9
[INFO] [stdout]     |
[INFO] [stdout] 392 |         quality: QualityScore,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/types.rs:396:9
[INFO] [stdout]     |
[INFO] [stdout] 396 |         position: GenomicPosition,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/types.rs:397:9
[INFO] [stdout]     |
[INFO] [stdout] 397 |         inserted_bases: DnaSequence,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/types.rs:398:9
[INFO] [stdout]     |
[INFO] [stdout] 398 |         quality: QualityScore,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/types.rs:402:9
[INFO] [stdout]     |
[INFO] [stdout] 402 |         position: GenomicPosition,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/types.rs:403:9
[INFO] [stdout]     |
[INFO] [stdout] 403 |         deleted_length: usize,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/types.rs:404:9
[INFO] [stdout]     |
[INFO] [stdout] 404 |         quality: QualityScore,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/types.rs:408:9
[INFO] [stdout]     |
[INFO] [stdout] 408 |         chromosome: u8,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/types.rs:409:9
[INFO] [stdout]     |
[INFO] [stdout] 409 |         start: u64,
[INFO] [stdout]     |         ^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/types.rs:410:9
[INFO] [stdout]     |
[INFO] [stdout] 410 |         end: u64,
[INFO] [stdout]     |         ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/types.rs:411:9
[INFO] [stdout]     |
[INFO] [stdout] 411 |         variant_type: String,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/types.rs:412:9
[INFO] [stdout]     |
[INFO] [stdout] 412 |         quality: QualityScore,
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:447:5
[INFO] [stdout]     |
[INFO] [stdout] 447 |     A, C, D, E, F, G, H, I, K, L,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:447:8
[INFO] [stdout]     |
[INFO] [stdout] 447 |     A, C, D, E, F, G, H, I, K, L,
[INFO] [stdout]     |        ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:447:11
[INFO] [stdout]     |
[INFO] [stdout] 447 |     A, C, D, E, F, G, H, I, K, L,
[INFO] [stdout]     |           ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:447:14
[INFO] [stdout]     |
[INFO] [stdout] 447 |     A, C, D, E, F, G, H, I, K, L,
[INFO] [stdout]     |              ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:447:17
[INFO] [stdout]     |
[INFO] [stdout] 447 |     A, C, D, E, F, G, H, I, K, L,
[INFO] [stdout]     |                 ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:447:20
[INFO] [stdout]     |
[INFO] [stdout] 447 |     A, C, D, E, F, G, H, I, K, L,
[INFO] [stdout]     |                    ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:447:23
[INFO] [stdout]     |
[INFO] [stdout] 447 |     A, C, D, E, F, G, H, I, K, L,
[INFO] [stdout]     |                       ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:447:26
[INFO] [stdout]     |
[INFO] [stdout] 447 |     A, C, D, E, F, G, H, I, K, L,
[INFO] [stdout]     |                          ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:447:29
[INFO] [stdout]     |
[INFO] [stdout] 447 |     A, C, D, E, F, G, H, I, K, L,
[INFO] [stdout]     |                             ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:447:32
[INFO] [stdout]     |
[INFO] [stdout] 447 |     A, C, D, E, F, G, H, I, K, L,
[INFO] [stdout]     |                                ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:448:5
[INFO] [stdout]     |
[INFO] [stdout] 448 |     M, N, P, Q, R, S, T, V, W, Y,
[INFO] [stdout]     |     ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:448:8
[INFO] [stdout]     |
[INFO] [stdout] 448 |     M, N, P, Q, R, S, T, V, W, Y,
[INFO] [stdout]     |        ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:448:11
[INFO] [stdout]     |
[INFO] [stdout] 448 |     M, N, P, Q, R, S, T, V, W, Y,
[INFO] [stdout]     |           ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:448:14
[INFO] [stdout]     |
[INFO] [stdout] 448 |     M, N, P, Q, R, S, T, V, W, Y,
[INFO] [stdout]     |              ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:448:17
[INFO] [stdout]     |
[INFO] [stdout] 448 |     M, N, P, Q, R, S, T, V, W, Y,
[INFO] [stdout]     |                 ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:448:20
[INFO] [stdout]     |
[INFO] [stdout] 448 |     M, N, P, Q, R, S, T, V, W, Y,
[INFO] [stdout]     |                    ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:448:23
[INFO] [stdout]     |
[INFO] [stdout] 448 |     M, N, P, Q, R, S, T, V, W, Y,
[INFO] [stdout]     |                       ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:448:26
[INFO] [stdout]     |
[INFO] [stdout] 448 |     M, N, P, Q, R, S, T, V, W, Y,
[INFO] [stdout]     |                          ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:448:29
[INFO] [stdout]     |
[INFO] [stdout] 448 |     M, N, P, Q, R, S, T, V, W, Y,
[INFO] [stdout]     |                             ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]    --> src/types.rs:448:32
[INFO] [stdout]     |
[INFO] [stdout] 448 |     M, N, P, Q, R, S, T, V, W, Y,
[INFO] [stdout]     |                                ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for an enum
[INFO] [stdout]   --> src/kmer.rs:15:1
[INFO] [stdout]    |
[INFO] [stdout] 15 | pub enum KmerError {
[INFO] [stdout]    | ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]   --> src/kmer.rs:17:5
[INFO] [stdout]    |
[INFO] [stdout] 17 |     InvalidKmerLength(usize),
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]   --> src/kmer.rs:19:5
[INFO] [stdout]    |
[INFO] [stdout] 19 |     InvalidSequence(String),
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]   --> src/kmer.rs:21:5
[INFO] [stdout]    |
[INFO] [stdout] 21 |     DatabaseError(#[from] ruvector_core::RuvectorError),
[INFO] [stdout]    |     ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a variant
[INFO] [stdout]   --> src/kmer.rs:23:5
[INFO] [stdout]    |
[INFO] [stdout] 23 |     EmptySequence,
[INFO] [stdout]    |     ^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/kmer.rs:296:5
[INFO] [stdout]     |
[INFO] [stdout] 296 |     pub id: String,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/kmer.rs:297:5
[INFO] [stdout]     |
[INFO] [stdout] 297 |     pub score: f32,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: missing documentation for a struct field
[INFO] [stdout]    --> src/kmer.rs:298:5
[INFO] [stdout]     |
[INFO] [stdout] 298 |     pub distance: f32,
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `Codec`, `KmerVectorBlock`, `RvdnaWriter`, `SparseAttention`, and `VariantTensor`
[INFO] [stdout]   --> src/main.rs:20:19
[INFO] [stdout]    |
[INFO] [stdout] 20 |     rvdna::{self, Codec, KmerVectorBlock, RvdnaReader, RvdnaWriter, SparseAttention, VariantTensor},
[INFO] [stdout]    |                   ^^^^^  ^^^^^^^^^^^^^^^               ^^^^^^^^^^^  ^^^^^^^^^^^^^^^  ^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unnecessary parentheses around closure body
[INFO] [stdout]    --> benches/dna_bench.rs:268:49
[INFO] [stdout]     |
[INFO] [stdout] 268 |         let betas: Vec<f32> = (0..1000).map(|i| (i as f32 / 1000.0)).collect();
[INFO] [stdout]     |                                                 ^                 ^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_parens)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] help: remove these parentheses
[INFO] [stdout]     |
[INFO] [stdout] 268 -         let betas: Vec<f32> = (0..1000).map(|i| (i as f32 / 1000.0)).collect();
[INFO] [stdout] 268 +         let betas: Vec<f32> = (0..1000).map(|i| i as f32 / 1000.0).collect();
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unnecessary parentheses around closure body
[INFO] [stdout]    --> benches/dna_bench.rs:276:49
[INFO] [stdout]     |
[INFO] [stdout] 276 |         let betas: Vec<f32> = (0..1000).map(|i| (i as f32 / 2000.0 + 0.25)).collect();
[INFO] [stdout]     |                                                 ^                        ^
[INFO] [stdout]     |
[INFO] [stdout] help: remove these parentheses
[INFO] [stdout]     |
[INFO] [stdout] 276 -         let betas: Vec<f32> = (0..1000).map(|i| (i as f32 / 2000.0 + 0.25)).collect();
[INFO] [stdout] 276 +         let betas: Vec<f32> = (0..1000).map(|i| i as f32 / 2000.0 + 0.25).collect();
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `Codec`, `KmerVectorBlock`, `RvdnaWriter`, `SparseAttention`, and `VariantTensor`
[INFO] [stdout]   --> src/main.rs:20:19
[INFO] [stdout]    |
[INFO] [stdout] 20 |     rvdna::{self, Codec, KmerVectorBlock, RvdnaReader, RvdnaWriter, SparseAttention, VariantTensor},
[INFO] [stdout]    |                   ^^^^^  ^^^^^^^^^^^^^^^               ^^^^^^^^^^^  ^^^^^^^^^^^^^^^  ^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `ins_vec`
[INFO] [stdout]   --> src/main.rs:70:9
[INFO] [stdout]    |
[INFO] [stdout] 70 |     let ins_vec = insulin.to_kmer_vector(11, 512)?;
[INFO] [stdout]    |         ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_ins_vec`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `ins_vec`
[INFO] [stdout]   --> src/main.rs:70:9
[INFO] [stdout]    |
[INFO] [stdout] 70 |     let ins_vec = insulin.to_kmer_vector(11, 512)?;
[INFO] [stdout]    |         ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_ins_vec`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 34s
[INFO] running `Command { std: "docker" "inspect" "29acdffd74134d7a9a1e3bdaa399db0f614d636ccbb9cfb2e52fe2464367de29", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "29acdffd74134d7a9a1e3bdaa399db0f614d636ccbb9cfb2e52fe2464367de29", kill_on_drop: false }`
[INFO] [stdout] 29acdffd74134d7a9a1e3bdaa399db0f614d636ccbb9cfb2e52fe2464367de29
