[INFO] cloning repository https://github.com/COMBINE-lab/piscem
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/COMBINE-lab/piscem" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FCOMBINE-lab%2Fpiscem", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FCOMBINE-lab%2Fpiscem'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 3867ac8ffeced689656565d24ed4a95ca7791e9e
[INFO] checking COMBINE-lab/piscem against master#3f6250a7bb79e600d9036bbc7c8f65af43933643 for pr-147859
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FCOMBINE-lab%2Fpiscem" "/workspace/builds/worker-7-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-7-tc1/source'...
[INFO] [stderr] done.
[INFO] removed /workspace/builds/worker-7-tc1/source/.cargo/config.toml
[INFO] started tweaking git repo https://github.com/COMBINE-lab/piscem
[INFO] finished tweaking git repo https://github.com/COMBINE-lab/piscem
[INFO] tweaked toml for git repo https://github.com/COMBINE-lab/piscem written to /workspace/builds/worker-7-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/COMBINE-lab/piscem on toolchain 3f6250a7bb79e600d9036bbc7c8f65af43933643
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+3f6250a7bb79e600d9036bbc7c8f65af43933643" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/COMBINE-lab/piscem already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+3f6250a7bb79e600d9036bbc7c8f65af43933643" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded sha2-asm v0.6.4
[INFO] [stderr]   Downloaded zmij v1.0.17
[INFO] [stderr]   Downloaded path-tools v0.1.0
[INFO] [stderr]   Downloaded prepare_fasta v0.2.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:61361fe0aef631f17e9d025a70c5a647956f8c671dd02950a60ad3f5cc5526d7" "/opt/rustwide/cargo-home/bin/cargo" "+3f6250a7bb79e600d9036bbc7c8f65af43933643" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] c62ba45c51b034e9581254f3e095a09a89dca40d4cb8c007210a6c6568df58d8
[INFO] running `Command { std: "docker" "start" "-a" "c62ba45c51b034e9581254f3e095a09a89dca40d4cb8c007210a6c6568df58d8", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "c62ba45c51b034e9581254f3e095a09a89dca40d4cb8c007210a6c6568df58d8", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "c62ba45c51b034e9581254f3e095a09a89dca40d4cb8c007210a6c6568df58d8", kill_on_drop: false }`
[INFO] [stdout] c62ba45c51b034e9581254f3e095a09a89dca40d4cb8c007210a6c6568df58d8
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:61361fe0aef631f17e9d025a70c5a647956f8c671dd02950a60ad3f5cc5526d7" "/opt/rustwide/cargo-home/bin/cargo" "+3f6250a7bb79e600d9036bbc7c8f65af43933643" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 47797226fd23413fde16996663395d1dd7c3a721601e1735e77fccab64526293
[INFO] running `Command { std: "docker" "start" "-a" "47797226fd23413fde16996663395d1dd7c3a721601e1735e77fccab64526293", kill_on_drop: false }`
[INFO] [stderr]    Compiling find-msvc-tools v0.1.9
[INFO] [stderr]    Compiling rustix v1.1.3
[INFO] [stderr]    Compiling libc v0.2.180
[INFO] [stderr]    Compiling serde_core v1.0.228
[INFO] [stderr]    Compiling zmij v1.0.17
[INFO] [stderr]     Checking miniz_oxide v0.8.9
[INFO] [stderr]     Checking clap_lex v0.7.7
[INFO] [stderr]    Compiling serde_json v1.0.149
[INFO] [stderr]     Checking regex-automata v0.4.13
[INFO] [stderr]     Checking buffer-redux v1.0.2
[INFO] [stderr]     Checking crypto-common v0.1.6
[INFO] [stderr]     Checking bytecount v0.6.9
[INFO] [stderr]     Checking itoa v1.0.17
[INFO] [stderr]    Compiling clap_derive v4.5.55
[INFO] [stderr]     Checking path-tools v0.1.0
[INFO] [stderr]     Checking num_cpus v1.17.0
[INFO] [stderr]     Checking digest v0.10.7
[INFO] [stderr]     Checking flate2 v1.1.2
[INFO] [stderr]    Compiling jobserver v0.1.34
[INFO] [stderr]    Compiling cc v1.2.55
[INFO] [stderr]     Checking terminal_size v0.4.3
[INFO] [stderr]     Checking clap_builder v4.5.56
[INFO] [stderr]    Compiling cmake v0.1.57
[INFO] [stderr]     Checking matchers v0.2.0
[INFO] [stderr]    Compiling zstd-sys v2.0.15+zstd.1.5.7
[INFO] [stderr]    Compiling liblzma-sys v0.3.13
[INFO] [stderr]    Compiling bzip2-sys v0.1.13+1.0.8
[INFO] [stderr]    Compiling sha2-asm v0.6.4
[INFO] [stderr]    Compiling piscem v0.14.6 (/opt/rustwide/workdir)
[INFO] [stderr]     Checking tracing-subscriber v0.3.22
[INFO] [stderr]     Checking sha2 v0.10.9
[INFO] [stderr]     Checking clap v4.5.56
[INFO] [stderr] error: failed to run custom build command for `piscem v0.14.6 (/opt/rustwide/workdir)`
[INFO] [stderr] note: To improve backtraces for build dependencies, set the CARGO_PROFILE_DEV_BUILD_OVERRIDE_DEBUG=true environment variable to enable debug information generation.
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/target/debug/build/piscem-1bcc9eac37c902d0/build-script-build` (exit status: 101)
[INFO] [stderr]   --- stdout
[INFO] [stderr]   cargo:rerun-if-changed=cuttlefish/CMakeLists.txt
[INFO] [stderr]   cargo:rerun-if-changed=piscem-cpp/CMakeLists.txt
[INFO] [stderr]   CMAKE_TOOLCHAIN_FILE_x86_64-unknown-linux-gnu = None
[INFO] [stderr]   CMAKE_TOOLCHAIN_FILE_x86_64_unknown_linux_gnu = None
[INFO] [stderr]   HOST_CMAKE_TOOLCHAIN_FILE = None
[INFO] [stderr]   CMAKE_TOOLCHAIN_FILE = None
[INFO] [stderr]   CMAKE_GENERATOR_x86_64-unknown-linux-gnu = None
[INFO] [stderr]   CMAKE_GENERATOR_x86_64_unknown_linux_gnu = None
[INFO] [stderr]   HOST_CMAKE_GENERATOR = None
[INFO] [stderr]   CMAKE_GENERATOR = None
[INFO] [stderr]   CMAKE_PREFIX_PATH_x86_64-unknown-linux-gnu = None
[INFO] [stderr]   CMAKE_PREFIX_PATH_x86_64_unknown_linux_gnu = None
[INFO] [stderr]   HOST_CMAKE_PREFIX_PATH = None
[INFO] [stderr]   CMAKE_PREFIX_PATH = None
[INFO] [stderr]   CMAKE_x86_64-unknown-linux-gnu = None
[INFO] [stderr]   CMAKE_x86_64_unknown_linux_gnu = None
[INFO] [stderr]   HOST_CMAKE = None
[INFO] [stderr]   CMAKE = None
[INFO] [stderr] 
[INFO] [stderr]   --- stderr
[INFO] [stderr]   running: cd "/opt/rustwide/target/debug/build/piscem-cf8d0af3afa1e30a/out/build" && CMAKE_PREFIX_PATH="" LC_ALL="C" "cmake" "/opt/rustwide/workdir/piscem-cpp" "-B" "/opt/rustwide/target/debug/build/piscem-cf8d0af3afa1e30a/out/build" "-DCMAKE_INSTALL_PREFIX=/opt/rustwide/target/debug/build/piscem-cf8d0af3afa1e30a/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64 -w" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64 -w" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_ASM_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64 -w" "-DCMAKE_ASM_COMPILER=/usr/bin/cc" "-DCMAKE_BUILD_TYPE=Debug"
[INFO] [stderr]   CMake Warning:
[INFO] [stderr]     Ignoring extra path from command line:
[INFO] [stderr] 
[INFO] [stderr]      "/opt/rustwide/workdir/piscem-cpp"
[INFO] [stderr] 
[INFO] [stderr] 
[INFO] [stderr]   CMake Error: The source directory "/opt/rustwide/workdir/piscem-cpp" does not appear to contain CMakeLists.txt.
[INFO] [stderr]   Specify --help for usage, or press the help button on the CMake GUI.
[INFO] [stderr] 
[INFO] [stderr]   thread 'main' (539) panicked at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/cmake-0.1.57/src/lib.rs:1132:5:
[INFO] [stderr] 
[INFO] [stderr]   command did not execute successfully, got: exit status: 1
[INFO] [stderr] 
[INFO] [stderr]   build script failed, must exit now
[INFO] [stderr]   stack backtrace:
[INFO] [stderr]      0:     0x6246275b328a - std[2616be7e16619f65]::backtrace_rs::backtrace::libunwind::trace
[INFO] [stderr]                                  at /rustc/3f6250a7bb79e600d9036bbc7c8f65af43933643/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9
[INFO] [stderr]      1:     0x6246275b328a - std[2616be7e16619f65]::backtrace_rs::backtrace::trace_unsynchronized::<std[2616be7e16619f65]::sys::backtrace::_print_fmt::{closure#1}>
[INFO] [stderr]                                  at /rustc/3f6250a7bb79e600d9036bbc7c8f65af43933643/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14
[INFO] [stderr]      2:     0x6246275b328a - std[2616be7e16619f65]::sys::backtrace::_print_fmt
[INFO] [stderr]                                  at /rustc/3f6250a7bb79e600d9036bbc7c8f65af43933643/library/std/src/sys/backtrace.rs:74:9
[INFO] [stderr]      3:     0x6246275b328a - <<std[2616be7e16619f65]::sys::backtrace::BacktraceLock>::print::DisplayBacktrace as core[a217921f891fa6d1]::fmt::Display>::fmt
[INFO] [stderr]                                  at /rustc/3f6250a7bb79e600d9036bbc7c8f65af43933643/library/std/src/sys/backtrace.rs:44:26
[INFO] [stderr]      4:     0x6246275c74ba - <core[a217921f891fa6d1]::fmt::rt::Argument>::fmt
[INFO] [stderr]                                  at /rustc/3f6250a7bb79e600d9036bbc7c8f65af43933643/library/core/src/fmt/rt.rs:152:76
[INFO] [stderr]      5:     0x6246275c74ba - core[a217921f891fa6d1]::fmt::write
[INFO] [stderr]      6:     0x6246275b9402 - std[2616be7e16619f65]::io::default_write_fmt::<std[2616be7e16619f65]::sys::stdio::unix::Stderr>
[INFO] [stderr]                                  at /rustc/3f6250a7bb79e600d9036bbc7c8f65af43933643/library/std/src/io/mod.rs:639:11
[INFO] [stderr]      7:     0x6246275b9402 - <std[2616be7e16619f65]::sys::stdio::unix::Stderr as std[2616be7e16619f65]::io::Write>::write_fmt
[INFO] [stderr]                                  at /rustc/3f6250a7bb79e600d9036bbc7c8f65af43933643/library/std/src/io/mod.rs:1994:13
[INFO] [stderr]      8:     0x624627594dbf - <std[2616be7e16619f65]::sys::backtrace::BacktraceLock>::print
[INFO] [stderr]                                  at /rustc/3f6250a7bb79e600d9036bbc7c8f65af43933643/library/std/src/sys/backtrace.rs:47:9
[INFO] [stderr]      9:     0x624627594dbf - std[2616be7e16619f65]::panicking::default_hook::{closure#0}
[INFO] [stderr]                                  at /rustc/3f6250a7bb79e600d9036bbc7c8f65af43933643/library/std/src/panicking.rs:292:27
[INFO] [stderr]     10:     0x6246275ae011 - std[2616be7e16619f65]::panicking::default_hook
[INFO] [stderr]                                  at /rustc/3f6250a7bb79e600d9036bbc7c8f65af43933643/library/std/src/panicking.rs:319:9
[INFO] [stderr]     11:     0x6246275ae1cb - std[2616be7e16619f65]::panicking::panic_with_hook
[INFO] [stderr]                                  at /rustc/3f6250a7bb79e600d9036bbc7c8f65af43933643/library/std/src/panicking.rs:825:13
[INFO] [stderr]     12:     0x624627594e78 - std[2616be7e16619f65]::panicking::panic_handler::{closure#0}
[INFO] [stderr]                                  at /rustc/3f6250a7bb79e600d9036bbc7c8f65af43933643/library/std/src/panicking.rs:698:13
[INFO] [stderr]     13:     0x624627589ff9 - std[2616be7e16619f65]::sys::backtrace::__rust_end_short_backtrace::<std[2616be7e16619f65]::panicking::panic_handler::{closure#0}, !>
[INFO] [stderr]                                  at /rustc/3f6250a7bb79e600d9036bbc7c8f65af43933643/library/std/src/sys/backtrace.rs:182:18
[INFO] [stderr]     14:     0x6246275957dd - __rustc[79bb0e7ed026b28d]::rust_begin_unwind
[INFO] [stderr]                                  at /rustc/3f6250a7bb79e600d9036bbc7c8f65af43933643/library/std/src/panicking.rs:689:5
[INFO] [stderr]     15:     0x6246275c7d6c - core[a217921f891fa6d1]::panicking::panic_fmt
[INFO] [stderr]                                  at /rustc/3f6250a7bb79e600d9036bbc7c8f65af43933643/library/core/src/panicking.rs:80:14
[INFO] [stderr]     16:     0x624627513bd7 - cmake[98ab78b96868031b]::fail
[INFO] [stderr]     17:     0x624627513863 - cmake[98ab78b96868031b]::run
[INFO] [stderr]     18:     0x6246275191d8 - <cmake[98ab78b96868031b]::Config>::build
[INFO] [stderr]     19:     0x624627502d9d - build_script_build[7931f09b5fe3b1d9]::main
[INFO] [stderr]     20:     0x624627505693 - <fn() as core[a217921f891fa6d1]::ops::function::FnOnce<()>>::call_once
[INFO] [stderr]     21:     0x624627501ba6 - std[2616be7e16619f65]::sys::backtrace::__rust_begin_short_backtrace::<fn(), ()>
[INFO] [stderr]     22:     0x624627501bb9 - std[2616be7e16619f65]::rt::lang_start::<()>::{closure#0}
[INFO] [stderr]     23:     0x6246275ad016 - <&dyn core[a217921f891fa6d1]::ops::function::Fn<(), Output = i32> + core[a217921f891fa6d1]::marker::Sync + core[a217921f891fa6d1]::panic::unwind_safe::RefUnwindSafe as core[a217921f891fa6d1]::ops::function::FnOnce<()>>::call_once
[INFO] [stderr]                                  at /rustc/3f6250a7bb79e600d9036bbc7c8f65af43933643/library/core/src/ops/function.rs:287:21
[INFO] [stderr]     24:     0x6246275ad016 - std[2616be7e16619f65]::panicking::catch_unwind::do_call::<&dyn core[a217921f891fa6d1]::ops::function::Fn<(), Output = i32> + core[a217921f891fa6d1]::marker::Sync + core[a217921f891fa6d1]::panic::unwind_safe::RefUnwindSafe, i32>
[INFO] [stderr]                                  at /rustc/3f6250a7bb79e600d9036bbc7c8f65af43933643/library/std/src/panicking.rs:581:40
[INFO] [stderr]     25:     0x6246275ad016 - std[2616be7e16619f65]::panicking::catch_unwind::<i32, &dyn core[a217921f891fa6d1]::ops::function::Fn<(), Output = i32> + core[a217921f891fa6d1]::marker::Sync + core[a217921f891fa6d1]::panic::unwind_safe::RefUnwindSafe>
[INFO] [stderr]                                  at /rustc/3f6250a7bb79e600d9036bbc7c8f65af43933643/library/std/src/panicking.rs:544:19
[INFO] [stderr]     26:     0x6246275ad016 - std[2616be7e16619f65]::panic::catch_unwind::<&dyn core[a217921f891fa6d1]::ops::function::Fn<(), Output = i32> + core[a217921f891fa6d1]::marker::Sync + core[a217921f891fa6d1]::panic::unwind_safe::RefUnwindSafe, i32>
[INFO] [stderr]                                  at /rustc/3f6250a7bb79e600d9036bbc7c8f65af43933643/library/std/src/panic.rs:359:14
[INFO] [stderr]     27:     0x6246275ad016 - std[2616be7e16619f65]::rt::lang_start_internal::{closure#0}
[INFO] [stderr]                                  at /rustc/3f6250a7bb79e600d9036bbc7c8f65af43933643/library/std/src/rt.rs:175:24
[INFO] [stderr]     28:     0x6246275ad016 - std[2616be7e16619f65]::panicking::catch_unwind::do_call::<std[2616be7e16619f65]::rt::lang_start_internal::{closure#0}, isize>
[INFO] [stderr]                                  at /rustc/3f6250a7bb79e600d9036bbc7c8f65af43933643/library/std/src/panicking.rs:581:40
[INFO] [stderr]     29:     0x6246275ad016 - std[2616be7e16619f65]::panicking::catch_unwind::<isize, std[2616be7e16619f65]::rt::lang_start_internal::{closure#0}>
[INFO] [stderr]                                  at /rustc/3f6250a7bb79e600d9036bbc7c8f65af43933643/library/std/src/panicking.rs:544:19
[INFO] [stderr]     30:     0x6246275ad016 - std[2616be7e16619f65]::panic::catch_unwind::<std[2616be7e16619f65]::rt::lang_start_internal::{closure#0}, isize>
[INFO] [stderr]                                  at /rustc/3f6250a7bb79e600d9036bbc7c8f65af43933643/library/std/src/panic.rs:359:14
[INFO] [stderr]     31:     0x6246275ad016 - std[2616be7e16619f65]::rt::lang_start_internal
[INFO] [stderr]                                  at /rustc/3f6250a7bb79e600d9036bbc7c8f65af43933643/library/std/src/rt.rs:171:5
[INFO] [stderr]     32:     0x6246275016c1 - std[2616be7e16619f65]::rt::lang_start::<()>
[INFO] [stderr]     33:     0x624627505745 - main
[INFO] [stderr]     34:     0x7a7248b5e1ca - <unknown>
[INFO] [stderr]     35:     0x7a7248b5e28b - __libc_start_main
[INFO] [stderr]     36:     0x624627500975 - _start
[INFO] [stderr]     37:                0x0 - <unknown>
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] running `Command { std: "docker" "inspect" "47797226fd23413fde16996663395d1dd7c3a721601e1735e77fccab64526293", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "47797226fd23413fde16996663395d1dd7c3a721601e1735e77fccab64526293", kill_on_drop: false }`
[INFO] [stdout] 47797226fd23413fde16996663395d1dd7c3a721601e1735e77fccab64526293
