[INFO] cloning repository https://github.com/tolkit/gff-stats
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/tolkit/gff-stats" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Ftolkit%2Fgff-stats", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Ftolkit%2Fgff-stats'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 9b98b92d4762e35c909ddbfd223f1b3a2ef056f9
[INFO] checking tolkit/gff-stats against try#f77b5bc6c7c84df104f86b0dd01d9490e3923fa8 for pr-147834
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Ftolkit%2Fgff-stats" "/workspace/builds/worker-1-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-1-tc2/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/tolkit/gff-stats
[INFO] finished tweaking git repo https://github.com/tolkit/gff-stats
[INFO] tweaked toml for git repo https://github.com/tolkit/gff-stats written to /workspace/builds/worker-1-tc2/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/tolkit/gff-stats on toolchain f77b5bc6c7c84df104f86b0dd01d9490e3923fa8
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+f77b5bc6c7c84df104f86b0dd01d9490e3923fa8" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/tolkit/gff-stats already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+f77b5bc6c7c84df104f86b0dd01d9490e3923fa8" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded os_str_bytes v6.0.0
[INFO] [stderr]   Downloaded memoffset v0.6.3
[INFO] [stderr]   Downloaded bio-types v0.13.0
[INFO] [stderr]   Downloaded enum-map-derive v0.4.6
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[INFO] [stderr]   Downloaded triple_accel v0.3.4
[INFO] [stderr]   Downloaded bytecount v0.6.2
[INFO] [stderr]   Downloaded array-macro v1.0.5
[INFO] [stderr]   Downloaded generic-array v0.13.3
[INFO] [stderr]   Downloaded crossbeam-epoch v0.9.3
[INFO] [stderr]   Downloaded enum-map v0.6.4
[INFO] [stderr]   Downloaded statrs v0.13.0
[INFO] [stderr]   Downloaded bio v1.1.0
[INFO] [stderr]   Downloaded ordered-float v3.4.0
[INFO] [stderr]   Downloaded syn v1.0.67
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[INFO] [stderr]   Downloaded bstr v0.2.15
[INFO] [stderr]   Downloaded csv v1.1.6
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+f77b5bc6c7c84df104f86b0dd01d9490e3923fa8" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 675667b9244280e09fac66055bc878d36faf20b90784da85fd8cbc10e8b31f7a
[INFO] running `Command { std: "docker" "start" "-a" "675667b9244280e09fac66055bc878d36faf20b90784da85fd8cbc10e8b31f7a", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "675667b9244280e09fac66055bc878d36faf20b90784da85fd8cbc10e8b31f7a", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "675667b9244280e09fac66055bc878d36faf20b90784da85fd8cbc10e8b31f7a", kill_on_drop: false }`
[INFO] [stdout] 675667b9244280e09fac66055bc878d36faf20b90784da85fd8cbc10e8b31f7a
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+f77b5bc6c7c84df104f86b0dd01d9490e3923fa8" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 70800bee33d82d5bfd3b8e81f7dcfb2411a4f816d99b2bf3d795ce2ee4922a93
[INFO] running `Command { std: "docker" "start" "-a" "70800bee33d82d5bfd3b8e81f7dcfb2411a4f816d99b2bf3d795ce2ee4922a93", kill_on_drop: false }`
[INFO] [stderr]    Compiling syn v1.0.67
[INFO] [stderr]    Compiling libc v0.2.139
[INFO] [stderr]    Compiling libm v0.2.1
[INFO] [stderr]    Compiling num-traits v0.2.14
[INFO] [stderr]    Compiling serde_derive v1.0.125
[INFO] [stderr]    Compiling serde v1.0.125
[INFO] [stderr]    Compiling num-integer v0.1.44
[INFO] [stderr]    Compiling crossbeam-utils v0.8.3
[INFO] [stderr]    Compiling num-complex v0.2.4
[INFO] [stderr]    Compiling memoffset v0.6.3
[INFO] [stderr]    Compiling num-rational v0.2.4
[INFO] [stderr]    Compiling io-lifetimes v1.0.4
[INFO] [stderr]    Compiling quote v1.0.9
[INFO] [stderr]     Checking matrixmultiply v0.2.4
[INFO] [stderr]    Compiling indexmap v1.6.2
[INFO] [stderr]    Compiling rustix v0.36.6
[INFO] [stderr]    Compiling heck v0.3.2
[INFO] [stderr]     Checking generic-array v0.13.3
[INFO] [stderr]     Checking regex-automata v0.1.9
[INFO] [stderr]     Checking regex-syntax v0.6.23
[INFO] [stderr]    Compiling ndarray v0.14.0
[INFO] [stderr]    Compiling anyhow v1.0.68
[INFO] [stderr]    Compiling rayon-core v1.10.1
[INFO] [stderr]     Checking either v1.6.1
[INFO] [stderr]     Checking csv-core v0.1.10
[INFO] [stderr]     Checking array-macro v1.0.5
[INFO] [stderr]     Checking os_str_bytes v6.0.0
[INFO] [stderr]     Checking fixedbitset v0.2.0
[INFO] [stderr]     Checking bit-set v0.5.2
[INFO] [stderr]     Checking itertools v0.9.0
[INFO] [stderr]     Checking fxhash v0.2.1
[INFO] [stderr]     Checking termcolor v1.1.3
[INFO] [stderr]     Checking triple_accel v0.3.4
[INFO] [stderr]     Checking bytecount v0.6.2
[INFO] [stderr]     Checking strsim v0.10.0
[INFO] [stderr]     Checking strum v0.20.0
[INFO] [stderr]     Checking once_cell v1.17.0
[INFO] [stderr]     Checking clap_lex v0.3.1
[INFO] [stderr]     Checking petgraph v0.5.1
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[INFO] [stderr]     Checking crossbeam-deque v0.8.2
[INFO] [stderr]     Checking regex v1.4.5
[INFO] [stderr]     Checking getrandom v0.1.16
[INFO] [stderr]     Checking num_cpus v1.13.0
[INFO] [stderr]     Checking rand_core v0.5.1
[INFO] [stderr]     Checking rand_chacha v0.2.2
[INFO] [stderr]     Checking approx v0.3.2
[INFO] [stderr]     Checking num-complex v0.3.1
[INFO] [stderr]     Checking itertools-num v0.1.3
[INFO] [stderr]     Checking ordered-float v3.4.0
[INFO] [stderr]     Checking rand v0.7.3
[INFO] [stderr]     Checking rayon v1.6.1
[INFO] [stderr]     Checking rand_distr v0.2.2
[INFO] [stderr]     Checking alga v0.9.3
[INFO] [stderr]    Compiling thiserror-impl v1.0.24
[INFO] [stderr]    Compiling enum-map-derive v0.4.6
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]    Compiling strum_macros v0.20.1
[INFO] [stderr]    Compiling getset v0.0.9
[INFO] [stderr]     Checking is-terminal v0.4.2
[INFO] [stderr]     Checking clap v4.1.1
[INFO] [stderr]     Checking nalgebra v0.19.0
[INFO] [stderr]     Checking enum-map v0.6.4
[INFO] [stderr]     Checking thiserror v1.0.24
[INFO] [stderr]     Checking bio-types v0.13.0
[INFO] [stderr]     Checking bstr v0.2.15
[INFO] [stderr]     Checking vec_map v0.8.2
[INFO] [stderr]     Checking multimap v0.8.3
[INFO] [stderr]     Checking bv v0.11.1
[INFO] [stderr]     Checking csv v1.1.6
[INFO] [stderr]     Checking statrs v0.13.0
[INFO] [stderr]     Checking bio v1.1.0
[INFO] [stdout] error[E0277]: `usize` is not an iterator
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/bio-1.1.0/src/pattern_matching/pssm/mod.rs:299:20
[INFO] [stdout]     |
[INFO] [stdout] 299 |         for row in scores.rows() {
[INFO] [stdout]     |                    ^^^^^^^^^^^^^ `usize` is not an iterator
[INFO] [stdout]     |
[INFO] [stdout]     = help: the trait `Iterator` is not implemented for `usize`
[INFO] [stdout]     = note: if you want to iterate between `start` until a value `end`, use the exclusive range syntax `start..end` or the inclusive range syntax `start..=end`
[INFO] [stdout]     = note: required for `usize` to implement `IntoIterator`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0282]: type annotations needed
[INFO] [stdout]    --> /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/bio-1.1.0/src/pattern_matching/pssm/mod.rs:300:31
[INFO] [stdout]     |
[INFO] [stdout] 300 |             tot += bits - ent(row.iter());
[INFO] [stdout]     |                               ^^^ cannot infer type
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] Some errors have detailed explanations: E0277, E0282.
[INFO] [stdout] 
[INFO] [stdout] For more information about an error, try `rustc --explain E0277`.
[INFO] [stdout] 
[INFO] [stderr] error: could not compile `bio` (lib) due to 2 previous errors
[INFO] running `Command { std: "docker" "inspect" "70800bee33d82d5bfd3b8e81f7dcfb2411a4f816d99b2bf3d795ce2ee4922a93", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "70800bee33d82d5bfd3b8e81f7dcfb2411a4f816d99b2bf3d795ce2ee4922a93", kill_on_drop: false }`
[INFO] [stdout] 70800bee33d82d5bfd3b8e81f7dcfb2411a4f816d99b2bf3d795ce2ee4922a93