[INFO] cloning repository https://github.com/8051Enthusiast/biodiff
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/8051Enthusiast/biodiff" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F8051Enthusiast%2Fbiodiff", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F8051Enthusiast%2Fbiodiff'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 7df6377aa2d260e7bb754f51f0c2f9bc601fc768
[INFO] checking 8051Enthusiast/biodiff against master#04ff05c9c0cfbca33115c5f1b8bb20a66a54b799 for pr-147834
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F8051Enthusiast%2Fbiodiff" "/workspace/builds/worker-7-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-7-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/8051Enthusiast/biodiff
[INFO] finished tweaking git repo https://github.com/8051Enthusiast/biodiff
[INFO] tweaked toml for git repo https://github.com/8051Enthusiast/biodiff written to /workspace/builds/worker-7-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/8051Enthusiast/biodiff on toolchain 04ff05c9c0cfbca33115c5f1b8bb20a66a54b799
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+04ff05c9c0cfbca33115c5f1b8bb20a66a54b799" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/8051Enthusiast/biodiff already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+04ff05c9c0cfbca33115c5f1b8bb20a66a54b799" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded proc-macro2 v1.0.79
[INFO] [stderr]   Downloaded toml_datetime v0.6.5
[INFO] [stderr]   Downloaded trycmd v0.15.1
[INFO] [stderr]   Downloaded anyhow v1.0.82
[INFO] [stderr]   Downloaded newtype_derive v0.1.6
[INFO] [stderr]   Downloaded strum v0.25.0
[INFO] [stderr]   Downloaded darling_macro v0.20.8
[INFO] [stderr]   Downloaded windows-targets v0.52.4
[INFO] [stderr]   Downloaded thiserror-impl v1.0.58
[INFO] [stderr]   Downloaded bytecount v0.6.7
[INFO] [stderr]   Downloaded derive-new v0.5.9
[INFO] [stderr]   Downloaded feature-probe v0.1.1
[INFO] [stderr]   Downloaded enumset_derive v0.8.1
[INFO] [stderr]   Downloaded parking_lot_core v0.9.9
[INFO] [stderr]   Downloaded triple_accel v0.4.0
[INFO] [stderr]   Downloaded bio-types v1.0.1
[INFO] [stderr]   Downloaded bytemuck v1.15.0
[INFO] [stderr]   Downloaded matrixmultiply v0.3.8
[INFO] [stderr]   Downloaded cursive v0.20.0
[INFO] [stderr]   Downloaded itertools v0.11.0
[INFO] [stderr]   Downloaded time v0.3.35
[INFO] [stderr]   Downloaded zerocopy v0.7.32
[INFO] [stderr]   Downloaded cursive_core v0.3.7
[INFO] [stderr]   Downloaded petgraph v0.6.4
[INFO] [stderr]   Downloaded syn v2.0.58
[INFO] [stderr]   Downloaded bio v1.6.0
[INFO] [stderr]   Downloaded regex v1.10.4
[INFO] [stderr]   Downloaded ndarray v0.15.6
[INFO] [stderr]   Downloaded clap_builder v4.5.2
[INFO] [stderr]   Downloaded hashbrown v0.14.3
[INFO] [stderr]   Downloaded serde_json v1.0.115
[INFO] [stderr]   Downloaded regex-syntax v0.8.3
[INFO] [stderr]   Downloaded winnow v0.6.6
[INFO] [stderr]   Downloaded crossbeam-channel v0.5.12
[INFO] [stderr]   Downloaded xi-unicode v0.3.0
[INFO] [stderr]   Downloaded rustix v0.38.32
[INFO] [stderr]   Downloaded toml_edit v0.22.12
[INFO] [stderr]   Downloaded windows_aarch64_gnullvm v0.52.4
[INFO] [stderr]   Downloaded windows_x86_64_gnullvm v0.52.4
[INFO] [stderr]   Downloaded safe_arch v0.7.1
[INFO] [stderr]   Downloaded wide v0.7.15
[INFO] [stderr]   Downloaded cc v1.0.92
[INFO] [stderr]   Downloaded bitflags v2.5.0
[INFO] [stderr]   Downloaded snapbox v0.5.9
[INFO] [stderr]   Downloaded regex-automata v0.4.6
[INFO] [stderr]   Downloaded clap v4.5.4
[INFO] [stderr]   Downloaded darling_core v0.20.8
[INFO] [stderr]   Downloaded log v0.4.21
[INFO] [stderr]   Downloaded num-traits v0.2.18
[INFO] [stderr]   Downloaded similar v2.5.0
[INFO] [stderr]   Downloaded anstyle-parse v0.2.3
[INFO] [stderr]   Downloaded libc v0.2.153
[INFO] [stderr]   Downloaded bv v0.11.1
[INFO] [stderr]   Downloaded csv-core v0.1.11
[INFO] [stderr]   Downloaded clap_derive v4.5.4
[INFO] [stderr]   Downloaded darling v0.20.8
[INFO] [stderr]   Downloaded enumset v1.1.3
[INFO] [stderr]   Downloaded getrandom v0.2.14
[INFO] [stderr]   Downloaded crossbeam-utils v0.8.19
[INFO] [stderr]   Downloaded windows_aarch64_msvc v0.52.4
[INFO] [stderr]   Downloaded windows_i686_gnu v0.52.4
[INFO] [stderr]   Downloaded windows_x86_64_gnu v0.52.4
[INFO] [stderr]   Downloaded windows_i686_msvc v0.52.4
[INFO] [stderr]   Downloaded csv v1.3.0
[INFO] [stderr]   Downloaded windows_x86_64_msvc v0.52.4
[INFO] [stderr]   Downloaded anstream v0.6.13
[INFO] [stderr]   Downloaded serde v1.0.197
[INFO] [stderr]   Downloaded lock_api v0.4.11
[INFO] [stderr]   Downloaded zerocopy-derive v0.7.32
[INFO] [stderr]   Downloaded ryu v1.0.17
[INFO] [stderr]   Downloaded fastrand v2.0.2
[INFO] [stderr]   Downloaded errno v0.3.8
[INFO] [stderr]   Downloaded memchr v2.7.2
[INFO] [stderr]   Downloaded os_pipe v1.1.5
[INFO] [stderr]   Downloaded editdistancek v1.0.2
[INFO] [stderr]   Downloaded itertools-num v0.1.3
[INFO] [stderr]   Downloaded multimap v0.9.1
[INFO] [stderr]   Downloaded ordered-float v3.9.2
[INFO] [stderr]   Downloaded rustversion v1.0.15
[INFO] [stderr]   Downloaded strum_macros v0.25.3
[INFO] [stderr]   Downloaded clap_lex v0.7.0
[INFO] [stderr]   Downloaded num-iter v0.1.44
[INFO] [stderr]   Downloaded owning_ref v0.4.1
[INFO] [stderr]   Downloaded primal-check v0.3.3
[INFO] [stderr]   Downloaded content_inspector v0.2.4
[INFO] [stderr]   Downloaded dunce v1.0.4
[INFO] [stderr]   Downloaded anstyle-wincon v3.0.2
[INFO] [stderr]   Downloaded snapbox-macros v0.3.8
[INFO] [stderr]   Downloaded wait-timeout v0.2.0
[INFO] [stderr]   Downloaded serde_spanned v0.6.5
[INFO] [stderr]   Downloaded cursive_buffered_backend v0.6.1
[INFO] [stderr]   Downloaded normalize-line-endings v0.3.0
[INFO] [stderr]   Downloaded anstyle-query v1.0.2
[INFO] [stderr]   Downloaded anstyle v1.0.6
[INFO] [stderr]   Downloaded serde_derive v1.0.197
[INFO] [stderr]   Downloaded linux-raw-sys v0.4.13
[INFO] [stderr]   Downloaded thiserror v1.0.58
[INFO] [stderr]   Downloaded num-complex v0.4.5
[INFO] [stderr]   Downloaded autocfg v1.2.0
[INFO] [stderr]   Downloaded humantime-serde v1.1.1
[INFO] [stderr]   Downloaded either v1.10.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+04ff05c9c0cfbca33115c5f1b8bb20a66a54b799" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] ab2b54faa4cfbe56994eec8f293231e44f03ec00557a93a63586e68ff95af1d3
[INFO] running `Command { std: "docker" "start" "-a" "ab2b54faa4cfbe56994eec8f293231e44f03ec00557a93a63586e68ff95af1d3", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "ab2b54faa4cfbe56994eec8f293231e44f03ec00557a93a63586e68ff95af1d3", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "ab2b54faa4cfbe56994eec8f293231e44f03ec00557a93a63586e68ff95af1d3", kill_on_drop: false }`
[INFO] [stdout] ab2b54faa4cfbe56994eec8f293231e44f03ec00557a93a63586e68ff95af1d3
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+04ff05c9c0cfbca33115c5f1b8bb20a66a54b799" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 3dba2ec7aa2ac7616a938d31364196193e7974dfbaa1ed23360d7db3046032d7
[INFO] running `Command { std: "docker" "start" "-a" "3dba2ec7aa2ac7616a938d31364196193e7974dfbaa1ed23360d7db3046032d7", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.79
[INFO] [stderr]    Compiling unicode-ident v1.0.12
[INFO] [stderr]    Compiling autocfg v1.2.0
[INFO] [stderr]    Compiling libc v0.2.153
[INFO] [stderr]    Compiling libm v0.2.8
[INFO] [stderr]     Checking memchr v2.7.2
[INFO] [stderr]    Compiling serde v1.0.197
[INFO] [stderr]    Compiling crossbeam-utils v0.8.19
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]    Compiling version_check v0.9.4
[INFO] [stderr]     Checking regex-syntax v0.8.3
[INFO] [stderr]     Checking itoa v1.0.11
[INFO] [stderr]    Compiling paste v1.0.14
[INFO] [stderr]     Checking bytemuck v1.15.0
[INFO] [stderr]     Checking ppv-lite86 v0.2.17
[INFO] [stderr]    Compiling ident_case v1.0.1
[INFO] [stderr]    Compiling fnv v1.0.7
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]     Checking hashbrown v0.14.3
[INFO] [stderr]     Checking utf8parse v0.2.1
[INFO] [stderr]    Compiling cc v1.0.92
[INFO] [stderr]     Checking equivalent v1.0.1
[INFO] [stderr]     Checking rawpointer v0.2.1
[INFO] [stderr]    Compiling typenum v1.17.0
[INFO] [stderr]    Compiling rustversion v1.0.15
[INFO] [stderr]     Checking safe_arch v0.7.1
[INFO] [stderr]     Checking indexmap v2.2.6
[INFO] [stderr]    Compiling num-traits v0.2.18
[INFO] [stderr]    Compiling num-rational v0.4.1
[INFO] [stderr]    Compiling matrixmultiply v0.3.8
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]     Checking anstyle-parse v0.2.3
[INFO] [stderr]     Checking anstyle-query v1.0.2
[INFO] [stderr]     Checking colorchoice v1.0.0
[INFO] [stderr]     Checking either v1.10.0
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]     Checking anstyle v1.0.6
[INFO] [stderr]     Checking log v0.4.21
[INFO] [stderr]    Compiling thiserror v1.0.58
[INFO] [stderr]    Compiling quote v1.0.36
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]     Checking anstream v0.6.13
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]     Checking getrandom v0.2.14
[INFO] [stderr]    Compiling ahash v0.8.11
[INFO] [stderr]     Checking wide v0.7.15
[INFO] [stderr]    Compiling lock_api v0.4.11
[INFO] [stderr]     Checking aho-corasick v1.1.3
[INFO] [stderr]     Checking rand_core v0.6.4
[INFO] [stderr]     Checking powerfmt v0.2.0
[INFO] [stderr]    Compiling signal-hook v0.3.17
[INFO] [stderr]    Compiling syn v2.0.58
[INFO] [stderr]    Compiling heck v0.4.1
[INFO] [stderr]    Compiling parking_lot_core v0.9.9
[INFO] [stderr]     Checking ryu v1.0.17
[INFO] [stderr]     Checking smallvec v1.13.2
[INFO] [stderr]    Compiling anyhow v1.0.82
[INFO] [stderr]     Checking deranged v0.3.11
[INFO] [stderr]     Checking rand_chacha v0.3.1
[INFO] [stderr]     Checking csv-core v0.1.11
[INFO] [stderr]     Checking signal-hook-registry v1.4.1
[INFO] [stderr]     Checking fixedbitset v0.4.2
[INFO] [stderr]     Checking stable_deref_trait v1.2.0
[INFO] [stderr]     Checking num-conv v0.1.0
[INFO] [stderr]    Compiling cmake v0.1.50
[INFO] [stderr]     Checking num_threads v0.1.7
[INFO] [stderr]     Checking bit-vec v0.6.3
[INFO] [stderr]     Checking once_cell v1.19.0
[INFO] [stderr]     Checking zerocopy v0.7.32
[INFO] [stderr]     Checking time-core v0.1.2
[INFO] [stderr]     Checking fxhash v0.2.1
[INFO] [stderr]     Checking rand v0.8.5
[INFO] [stderr]     Checking owning_ref v0.4.1
[INFO] [stderr]     Checking bit-set v0.5.3
[INFO] [stderr]     Checking petgraph v0.6.4
[INFO] [stderr]     Checking num-integer v0.1.46
[INFO] [stderr]     Checking num-complex v0.4.5
[INFO] [stderr]     Checking approx v0.5.1
[INFO] [stderr]     Checking time v0.3.35
[INFO] [stderr]     Checking num-iter v0.1.44
[INFO] [stderr]     Checking itertools-num v0.1.3
[INFO] [stderr]     Checking ordered-float v3.9.2
[INFO] [stderr]     Checking mio v0.8.11
[INFO] [stderr]     Checking rand_distr v0.4.3
[INFO] [stderr]     Checking itertools v0.11.0
[INFO] [stderr]    Compiling rustfft v6.2.0
[INFO] [stderr]     Checking ndarray v0.15.6
[INFO] [stderr]     Checking regex-automata v0.4.6
[INFO] [stderr]     Checking crossbeam-channel v0.5.12
[INFO] [stderr]     Checking strength_reduce v0.2.4
[INFO] [stderr]     Checking num v0.4.1
[INFO] [stderr]     Checking editdistancek v1.0.2
[INFO] [stderr]    Compiling rustix v0.38.32
[INFO] [stderr]     Checking triple_accel v0.4.0
[INFO] [stderr]     Checking unicode-width v0.1.11
[INFO] [stderr]     Checking strum v0.25.0
[INFO] [stderr]     Checking bytecount v0.6.7
[INFO] [stderr]     Checking unicode-segmentation v1.11.0
[INFO] [stderr]     Checking xi-unicode v0.3.0
[INFO] [stderr]    Compiling biodiff-wfa2-sys v2.3.5 (/opt/rustwide/workdir/biodiff-wfa2-sys)
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking transpose v0.2.3
[INFO] [stderr]     Checking signal-hook-mio v0.2.3
[INFO] [stderr]     Checking parking_lot v0.12.1
[INFO] [stderr]     Checking primal-check v0.3.3
[INFO] [stderr]     Checking crossbeam-epoch v0.9.18
[INFO] [stderr]     Checking linux-raw-sys v0.4.13
[INFO] [stderr]    Compiling rayon-core v1.12.1
[INFO] [stderr]     Checking clap_lex v0.7.0
[INFO] [stderr] error: failed to run custom build command for `biodiff-wfa2-sys v2.3.5 (/opt/rustwide/workdir/biodiff-wfa2-sys)`
[INFO] [stderr] note: To improve backtraces for build dependencies, set the CARGO_PROFILE_DEV_BUILD_OVERRIDE_DEBUG=true environment variable to enable debug information generation.
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/target/debug/build/biodiff-wfa2-sys-ff247aa61a8cf85c/build-script-build` (exit status: 1)
[INFO] [stderr]   --- stderr
[INFO] [stderr]   The WFA2 submodule is not present. Please run `git submodule update --init` to fetch it.
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] running `Command { std: "docker" "inspect" "3dba2ec7aa2ac7616a938d31364196193e7974dfbaa1ed23360d7db3046032d7", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "3dba2ec7aa2ac7616a938d31364196193e7974dfbaa1ed23360d7db3046032d7", kill_on_drop: false }`
[INFO] [stdout] 3dba2ec7aa2ac7616a938d31364196193e7974dfbaa1ed23360d7db3046032d7
