[INFO] cloning repository https://github.com/lazear/sage
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/lazear/sage" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Flazear%2Fsage", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Flazear%2Fsage'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 49590dc0e7e260512beb68a85c2eb839209a3b82
[INFO] checking lazear/sage against master#779e19d8baa3e3625bd4fc5c85cbb2ad47b43155 for pr-147589-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Flazear%2Fsage" "/workspace/builds/worker-3-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-3-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/lazear/sage
[INFO] finished tweaking git repo https://github.com/lazear/sage
[INFO] tweaked toml for git repo https://github.com/lazear/sage written to /workspace/builds/worker-3-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/lazear/sage on toolchain 779e19d8baa3e3625bd4fc5c85cbb2ad47b43155
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+779e19d8baa3e3625bd4fc5c85cbb2ad47b43155" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/lazear/sage already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+779e19d8baa3e3625bd4fc5c85cbb2ad47b43155" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
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[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+779e19d8baa3e3625bd4fc5c85cbb2ad47b43155" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
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[INFO] running `Command { std: "docker" "start" "-a" "1ce2f6ca5dde3329d6e5c05061d059f4c1eb47c71e1744e46b0a0a2fffe1c15c", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "1ce2f6ca5dde3329d6e5c05061d059f4c1eb47c71e1744e46b0a0a2fffe1c15c", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "1ce2f6ca5dde3329d6e5c05061d059f4c1eb47c71e1744e46b0a0a2fffe1c15c", kill_on_drop: false }`
[INFO] [stdout] 1ce2f6ca5dde3329d6e5c05061d059f4c1eb47c71e1744e46b0a0a2fffe1c15c
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+779e19d8baa3e3625bd4fc5c85cbb2ad47b43155" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 19b0658580227a79098a47ad80ff1db7c379e6827af6e76ac021f51859c138af
[INFO] running `Command { std: "docker" "start" "-a" "19b0658580227a79098a47ad80ff1db7c379e6827af6e76ac021f51859c138af", kill_on_drop: false }`
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[INFO] [stderr]     Checking sage-core v0.15.0-beta.1 (/opt/rustwide/workdir/crates/sage)
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[INFO] [stdout] warning: unnecessary parentheses around pattern
[INFO] [stdout]    --> crates/sage/src/fdr.rs:238:37
[INFO] [stdout]     |
[INFO] [stdout] 238 |     peaks.par_iter_mut().for_each(|((ix), (peak, _))| {
[INFO] [stdout]     |                                     ^  ^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_parens)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] help: remove these parentheses
[INFO] [stdout]     |
[INFO] [stdout] 238 -     peaks.par_iter_mut().for_each(|((ix), (peak, _))| {
[INFO] [stdout] 238 +     peaks.par_iter_mut().for_each(|(ix, (peak, _))| {
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `Deserialize` and `de::Visitor`
[INFO] [stdout]  --> crates/sage/src/modification.rs:7:13
[INFO] [stdout]   |
[INFO] [stdout] 7 | use serde::{de::Visitor, Deserialize, Serialize};
[INFO] [stdout]   |             ^^^^^^^^^^^  ^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Checking csv v1.3.1
[INFO] [stderr]     Checking h2 v0.3.26
[INFO] [stdout] warning: unnecessary parentheses around pattern
[INFO] [stdout]    --> crates/sage/src/fdr.rs:238:37
[INFO] [stdout]     |
[INFO] [stdout] 238 |     peaks.par_iter_mut().for_each(|((ix), (peak, _))| {
[INFO] [stdout]     |                                     ^  ^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_parens)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] help: remove these parentheses
[INFO] [stdout]     |
[INFO] [stdout] 238 -     peaks.par_iter_mut().for_each(|((ix), (peak, _))| {
[INFO] [stdout] 238 +     peaks.par_iter_mut().for_each(|(ix, (peak, _))| {
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `Deserialize` and `de::Visitor`
[INFO] [stdout]  --> crates/sage/src/modification.rs:7:13
[INFO] [stdout]   |
[INFO] [stdout] 7 | use serde::{de::Visitor, Deserialize, Serialize};
[INFO] [stdout]   |             ^^^^^^^^^^^  ^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Checking assert-json-diff v1.1.0
[INFO] [stderr]     Checking idna_adapter v1.2.1
[INFO] [stderr]     Checking aws-smithy-protocol-test v0.54.4
[INFO] [stderr]     Checking idna v1.0.3
[INFO] [stderr]     Checking url v2.5.4
[INFO] [stderr]     Checking rusqlite v0.32.1
[INFO] [stderr]    Compiling rinja_derive v0.3.5
[INFO] [stderr]     Checking timsrust v0.4.2
[INFO] [stderr]     Checking rinja v0.3.5
[INFO] [stderr]     Checking plotly v0.12.1
[INFO] [stderr]     Checking hyper v0.14.32
[INFO] [stderr]     Checking aws-smithy-http v0.54.4
[INFO] [stderr]     Checking hyper-rustls v0.23.2
[INFO] [stderr]     Checking hyper-rustls v0.24.2
[INFO] [stderr]     Checking reqwest v0.11.27
[INFO] [stderr]     Checking aws-smithy-http-tower v0.54.4
[INFO] [stderr]     Checking aws-sigv4 v0.54.2
[INFO] [stderr]     Checking aws-smithy-checksums v0.54.4
[INFO] [stderr]     Checking aws-smithy-client v0.54.4
[INFO] [stderr]     Checking aws-sig-auth v0.54.1
[INFO] [stderr]     Checking aws-http v0.54.1
[INFO] [stderr]     Checking aws-endpoint v0.54.1
[INFO] [stderr]     Checking aws-sdk-sts v0.24.0
[INFO] [stderr]     Checking aws-sdk-sso v0.24.0
[INFO] [stderr]     Checking aws-sdk-s3 v0.24.0
[INFO] [stderr]     Checking report-builder v0.1.0
[INFO] [stderr]     Checking aws-config v0.54.1
[INFO] [stderr]     Checking sage-cloudpath v0.15.0-beta.1 (/opt/rustwide/workdir/crates/sage-cloudpath)
[INFO] [stdout] warning: unnecessary parentheses around method argument
[INFO] [stdout]    --> crates/sage-cloudpath/src/tdf.rs:224:27
[INFO] [stdout]     |
[INFO] [stdout] 224 |         self.order.extend((0..self.len()));
[INFO] [stdout]     |                           ^             ^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_parens)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] help: remove these parentheses
[INFO] [stdout]     |
[INFO] [stdout] 224 -         self.order.extend((0..self.len()));
[INFO] [stdout] 224 +         self.order.extend(0..self.len() );
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unnecessary parentheses around method argument
[INFO] [stdout]    --> crates/sage-cloudpath/src/tdf.rs:224:27
[INFO] [stdout]     |
[INFO] [stdout] 224 |         self.order.extend((0..self.len()));
[INFO] [stdout]     |                           ^             ^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_parens)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] help: remove these parentheses
[INFO] [stdout]     |
[INFO] [stdout] 224 -         self.order.extend((0..self.len()));
[INFO] [stdout] 224 +         self.order.extend(0..self.len() );
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Checking sage-cli v0.15.0-beta.1 (/opt/rustwide/workdir/crates/sage-cli)
[INFO] [stdout] warning: unused import: `PeptideIx`
[INFO] [stdout]  --> crates/sage-cli/src/runner.rs:9:56
[INFO] [stdout]   |
[INFO] [stdout] 9 | use sage_core::database::{IndexedDatabase, Parameters, PeptideIx};
[INFO] [stdout]   |                                                        ^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `PeptideIx`
[INFO] [stdout]  --> crates/sage-cli/src/runner.rs:9:56
[INFO] [stdout]   |
[INFO] [stdout] 9 | use sage_core::database::{IndexedDatabase, Parameters, PeptideIx};
[INFO] [stdout]   |                                                        ^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> crates/sage-cli/src/runner.rs:149:13
[INFO] [stdout]     |
[INFO] [stdout] 149 |         let mut db_params = self.parameters.database.clone();
[INFO] [stdout]     |             ----^^^^^^^^^
[INFO] [stdout]     |             |
[INFO] [stdout]     |             help: remove this `mut`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_mut)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `id`
[INFO] [stdout]     --> crates/sage-cli/src/runner.rs:1300:27
[INFO] [stdout]      |
[INFO] [stdout] 1300 |                     for ((id, decoy), (peak, data)) in areas {
[INFO] [stdout]      |                           ^^ help: if this is intentional, prefix it with an underscore: `_id`
[INFO] [stdout]      |
[INFO] [stdout]      = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> crates/sage-cli/src/runner.rs:149:13
[INFO] [stdout]     |
[INFO] [stdout] 149 |         let mut db_params = self.parameters.database.clone();
[INFO] [stdout]     |             ----^^^^^^^^^
[INFO] [stdout]     |             |
[INFO] [stdout]     |             help: remove this `mut`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_mut)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `id`
[INFO] [stdout]     --> crates/sage-cli/src/runner.rs:1300:27
[INFO] [stdout]      |
[INFO] [stdout] 1300 |                     for ((id, decoy), (peak, data)) in areas {
[INFO] [stdout]      |                           ^^ help: if this is intentional, prefix it with an underscore: `_id`
[INFO] [stdout]      |
[INFO] [stdout]      = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 35s
[INFO] running `Command { std: "docker" "inspect" "19b0658580227a79098a47ad80ff1db7c379e6827af6e76ac021f51859c138af", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "19b0658580227a79098a47ad80ff1db7c379e6827af6e76ac021f51859c138af", kill_on_drop: false }`
[INFO] [stdout] 19b0658580227a79098a47ad80ff1db7c379e6827af6e76ac021f51859c138af