[INFO] cloning repository https://github.com/0ncorhynchus/pdbstat
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/0ncorhynchus/pdbstat" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F0ncorhynchus%2Fpdbstat", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F0ncorhynchus%2Fpdbstat'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 4ad97d115b0b9b3e9628155b646db596a5063109
[INFO] checking 0ncorhynchus/pdbstat against try#0de49ae9e81f9a1e7df6f0783824ce94ed18e8a9 for pr-147185
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F0ncorhynchus%2Fpdbstat" "/workspace/builds/worker-0-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-0-tc2/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/0ncorhynchus/pdbstat
[INFO] finished tweaking git repo https://github.com/0ncorhynchus/pdbstat
[INFO] tweaked toml for git repo https://github.com/0ncorhynchus/pdbstat written to /workspace/builds/worker-0-tc2/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/0ncorhynchus/pdbstat on toolchain 0de49ae9e81f9a1e7df6f0783824ce94ed18e8a9
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+0de49ae9e81f9a1e7df6f0783824ce94ed18e8a9" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/0ncorhynchus/pdbstat already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+0de49ae9e81f9a1e7df6f0783824ce94ed18e8a9" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr] warning: no edition set: defaulting to the 2015 edition while the latest is 2024
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+0de49ae9e81f9a1e7df6f0783824ce94ed18e8a9" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 26e57c8382e4e28d1e1a1a8d6303faf3a05c48dd3471d3fdd0b7f4163c4b2cb5
[INFO] running `Command { std: "docker" "start" "-a" "26e57c8382e4e28d1e1a1a8d6303faf3a05c48dd3471d3fdd0b7f4163c4b2cb5", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "26e57c8382e4e28d1e1a1a8d6303faf3a05c48dd3471d3fdd0b7f4163c4b2cb5", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "26e57c8382e4e28d1e1a1a8d6303faf3a05c48dd3471d3fdd0b7f4163c4b2cb5", kill_on_drop: false }`
[INFO] [stdout] 26e57c8382e4e28d1e1a1a8d6303faf3a05c48dd3471d3fdd0b7f4163c4b2cb5
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+0de49ae9e81f9a1e7df6f0783824ce94ed18e8a9" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 2173b21a704c4281d0d769550adede21cf971852893ab514ebf2d34893d47578
[INFO] running `Command { std: "docker" "start" "-a" "2173b21a704c4281d0d769550adede21cf971852893ab514ebf2d34893d47578", kill_on_drop: false }`
[INFO] [stderr] warning: no edition set: defaulting to the 2015 edition while the latest is 2024
[INFO] [stderr]    Compiling gcc v0.3.51
[INFO] [stderr]     Checking libc v0.2.24
[INFO] [stderr]    Compiling cmake v0.1.24
[INFO] [stderr]    Compiling chemfiles-sys v0.7.40
[INFO] [stderr] error: failed to run custom build command for `chemfiles-sys v0.7.40`
[INFO] [stderr] note: To improve backtraces for build dependencies, set the CARGO_PROFILE_DEV_BUILD_OVERRIDE_DEBUG=true environment variable to enable debug information generation.
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/target/debug/build/chemfiles-sys-a002e62328644896/build-script-build` (exit status: 101)
[INFO] [stderr]   --- stdout
[INFO] [stderr]   running: cd "/opt/rustwide/target/debug/build/chemfiles-sys-66310eee4bd6a8ab/out/build" && CMAKE_PREFIX_PATH="" "cmake" "/opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/chemfiles-sys-0.7.40/." "-DBUILD_SHARED_LIBS=OFF" "-DCMAKE_POSITION_INDEPENDENT_CODE=ON" "-DCMAKE_INSTALL_PREFIX=/opt/rustwide/target/debug/build/chemfiles-sys-66310eee4bd6a8ab/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_BUILD_TYPE=Debug"
[INFO] [stderr]   -- The C compiler identification is GNU 13.3.0
[INFO] [stderr]   -- The CXX compiler identification is GNU 13.3.0
[INFO] [stderr]   -- Detecting C compiler ABI info
[INFO] [stderr]   -- Detecting C compiler ABI info - done
[INFO] [stderr]   -- Check for working C compiler: /usr/bin/cc - skipped
[INFO] [stderr]   -- Detecting C compile features
[INFO] [stderr]   -- Detecting C compile features - done
[INFO] [stderr]   -- Detecting CXX compiler ABI info
[INFO] [stderr]   -- Detecting CXX compiler ABI info - done
[INFO] [stderr]   -- Check for working CXX compiler: /usr/bin/c++ - skipped
[INFO] [stderr]   -- Detecting CXX compile features
[INFO] [stderr]   -- Detecting CXX compile features - done
[INFO] [stderr]   -- Unpacking fmt sources
[INFO] [stderr]   -- Unpacking netcdf sources
[INFO] [stderr]   -- Unpacking tng sources
[INFO] [stderr]   -- Unpacking molfiles sources
[INFO] [stderr]   -- Configuring done (42.8s)
[INFO] [stderr]   -- Generating done (0.1s)
[INFO] [stderr]   -- Build files have been written to: /opt/rustwide/target/debug/build/chemfiles-sys-66310eee4bd6a8ab/out/build
[INFO] [stderr]   running: cd "/opt/rustwide/target/debug/build/chemfiles-sys-66310eee4bd6a8ab/out/build" && "cmake" "--build" "." "--target" "install" "--config" "Debug" "--" "-j8"
[INFO] [stderr]   [  1%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-66310eee4bd6a8ab/out/build/chemfiles/external/tng/CMakeFiles/tng_io_zlib.dir/external/zlib/compress.c.o
[INFO] [stderr]   [  2%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-66310eee4bd6a8ab/out/build/chemfiles/external/tng/CMakeFiles/tng_io_zlib.dir/external/zlib/adler32.c.o
[INFO] [stderr]   [  3%] Building CXX object /opt/rustwide/target/debug/build/chemfiles-sys-66310eee4bd6a8ab/out/build/chemfiles/external/fmt/fmt/CMakeFiles/fmt.dir/posix.cc.o
[INFO] [stderr]   [  3%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-66310eee4bd6a8ab/out/build/chemfiles/external/netcdf/CMakeFiles/netcdf.dir/liblib/nc_initialize.c.o
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[INFO] [stderr]   [ 22%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-66310eee4bd6a8ab/out/build/chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/huffman.c.o
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[INFO] [stderr]   [ 25%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-66310eee4bd6a8ab/out/build/chemfiles/external/netcdf/CMakeFiles/netcdf.dir/libsrc/lookup3.c.o
[INFO] [stderr]   [ 26%] Building C object /opt/rustwide/target/debug/build/chemfiles-sys-66310eee4bd6a8ab/out/build/chemfiles/external/netcdf/CMakeFiles/netcdf.dir/libsrc/nc_hashmap.c.o
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[INFO] [stderr]   [ 29%] Built target molfiles
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[INFO] [stderr]   [ 33%] Building CXX object chemfiles/CMakeFiles/chemfiles_files.dir/src/utils.cpp.o
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[INFO] [stderr]   [ 78%] Building CXX object chemfiles/CMakeFiles/chemfiles.dir/src/Residue.cpp.o
[INFO] [stderr]   [ 79%] Building CXX object chemfiles/CMakeFiles/chemfiles.dir/src/File.cpp.o
[INFO] [stderr]   [ 80%] Building CXX object chemfiles/CMakeFiles/chemfiles.dir/src/Format.cpp.o
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[INFO] [stderr]   [ 82%] Building CXX object chemfiles/CMakeFiles/chemfiles.dir/src/Topology.cpp.o
[INFO] [stderr] 
[INFO] [stderr]   --- stderr
[INFO] [stderr]   CMake Warning (dev) in CMakeLists.txt:
[INFO] [stderr]     No project() command is present.  The top-level CMakeLists.txt file must
[INFO] [stderr]     contain a literal, direct call to the project() command.  Add a line of
[INFO] [stderr]     code such as
[INFO] [stderr] 
[INFO] [stderr]       project(ProjectName)
[INFO] [stderr] 
[INFO] [stderr]     near the top of the file, but after cmake_minimum_required().
[INFO] [stderr] 
[INFO] [stderr]     CMake is pretending there is a "project(Project)" command on the first
[INFO] [stderr]     line.
[INFO] [stderr]   This warning is for project developers.  Use -Wno-dev to suppress it.
[INFO] [stderr] 
[INFO] [stderr]   CMake Warning (dev) in CMakeLists.txt:
[INFO] [stderr]     cmake_minimum_required() should be called prior to this top-level project()
[INFO] [stderr]     call.  Please see the cmake-commands(7) manual for usage documentation of
[INFO] [stderr]     both commands.
[INFO] [stderr]   This warning is for project developers.  Use -Wno-dev to suppress it.
[INFO] [stderr] 
[INFO] [stderr]   CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required):
[INFO] [stderr]     Compatibility with CMake < 3.5 will be removed from a future version of
[INFO] [stderr]     CMake.
[INFO] [stderr] 
[INFO] [stderr]     Update the VERSION argument <min> value or use a ...<max> suffix to tell
[INFO] [stderr]     CMake that the project does not need compatibility with older versions.
[INFO] [stderr] 
[INFO] [stderr] 
[INFO] [stderr]   CMake Deprecation Warning at chemfiles/CMakeLists.txt:1 (cmake_minimum_required):
[INFO] [stderr]     Compatibility with CMake < 3.5 will be removed from a future version of
[INFO] [stderr]     CMake.
[INFO] [stderr] 
[INFO] [stderr]     Update the VERSION argument <min> value or use a ...<max> suffix to tell
[INFO] [stderr]     CMake that the project does not need compatibility with older versions.
[INFO] [stderr] 
[INFO] [stderr] 
[INFO] [stderr]   CMake Deprecation Warning at chemfiles/CMakeLists.txt:5 (cmake_policy):
[INFO] [stderr]     Compatibility with CMake < 3.5 will be removed from a future version of
[INFO] [stderr]     CMake.
[INFO] [stderr] 
[INFO] [stderr]     Update the VERSION argument <min> value or use a ...<max> suffix to tell
[INFO] [stderr]     CMake that the project does not need compatibility with older versions.
[INFO] [stderr] 
[INFO] [stderr] 
[INFO] [stderr]   CMake Deprecation Warning at chemfiles/CMakeLists.txt:8 (cmake_policy):
[INFO] [stderr]     The OLD behavior for policy CMP0042 will be removed from a future version
[INFO] [stderr]     of CMake.
[INFO] [stderr] 
[INFO] [stderr]     The cmake-policies(7) manual explains that the OLD behaviors of all
[INFO] [stderr]     policies are deprecated and that a policy should be set to OLD only under
[INFO] [stderr]     specific short-term circumstances.  Projects should be ported to the NEW
[INFO] [stderr]     behavior and not rely on setting a policy to OLD.
[INFO] [stderr] 
[INFO] [stderr] 
[INFO] [stderr]   CMake Deprecation Warning at /opt/rustwide/target/debug/build/chemfiles-sys-66310eee4bd6a8ab/out/build/chemfiles/external/fmt/CMakeLists.txt:1 (cmake_minimum_required):
[INFO] [stderr]     Compatibility with CMake < 3.5 will be removed from a future version of
[INFO] [stderr]     CMake.
[INFO] [stderr] 
[INFO] [stderr]     Update the VERSION argument <min> value or use a ...<max> suffix to tell
[INFO] [stderr]     CMake that the project does not need compatibility with older versions.
[INFO] [stderr] 
[INFO] [stderr] 
[INFO] [stderr]   CMake Deprecation Warning at /opt/rustwide/target/debug/build/chemfiles-sys-66310eee4bd6a8ab/out/build/chemfiles/external/netcdf/CMakeLists.txt:1 (cmake_minimum_required):
[INFO] [stderr]     Compatibility with CMake < 3.5 will be removed from a future version of
[INFO] [stderr]     CMake.
[INFO] [stderr] 
[INFO] [stderr]     Update the VERSION argument <min> value or use a ...<max> suffix to tell
[INFO] [stderr]     CMake that the project does not need compatibility with older versions.
[INFO] [stderr] 
[INFO] [stderr] 
[INFO] [stderr]   CMake Deprecation Warning at /opt/rustwide/target/debug/build/chemfiles-sys-66310eee4bd6a8ab/out/build/chemfiles/external/tng/CMakeLists.txt:1 (cmake_minimum_required):
[INFO] [stderr]     Compatibility with CMake < 3.5 will be removed from a future version of
[INFO] [stderr]     CMake.
[INFO] [stderr] 
[INFO] [stderr]     Update the VERSION argument <min> value or use a ...<max> suffix to tell
[INFO] [stderr]     CMake that the project does not need compatibility with older versions.
[INFO] [stderr] 
[INFO] [stderr] 
[INFO] [stderr]   CMake Deprecation Warning at /opt/rustwide/target/debug/build/chemfiles-sys-66310eee4bd6a8ab/out/build/chemfiles/external/molfiles/CMakeLists.txt:1 (cmake_minimum_required):
[INFO] [stderr]     Compatibility with CMake < 3.5 will be removed from a future version of
[INFO] [stderr]     CMake.
[INFO] [stderr] 
[INFO] [stderr]     Update the VERSION argument <min> value or use a ...<max> suffix to tell
[INFO] [stderr]     CMake that the project does not need compatibility with older versions.
[INFO] [stderr] 
[INFO] [stderr] 
[INFO] [stderr]   In file included from /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/chemfiles-sys-0.7.40/chemfiles/src/Residue.cpp:8:
[INFO] [stderr]   /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/chemfiles-sys-0.7.40/chemfiles/include/chemfiles/Residue.hpp:30:40: error: 'uint64_t' has not been declared
[INFO] [stderr]      30 |     explicit Residue(std::string name, uint64_t resid = static_cast<uint64_t>(-1));
[INFO] [stderr]         |                                        ^~~~~~~~
[INFO] [stderr]   /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/chemfiles-sys-0.7.40/chemfiles/include/chemfiles/Residue.hpp:43:5: error: 'uint64_t' does not name a type
[INFO] [stderr]      43 |     uint64_t id() const {
[INFO] [stderr]         |     ^~~~~~~~
[INFO] [stderr]   /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/chemfiles-sys-0.7.40/chemfiles/include/chemfiles/Residue.hpp:16:1: note: 'uint64_t' is defined in header '<cstdint>'; did you forget to '#include <cstdint>'?
[INFO] [stderr]      15 | #include "chemfiles/sorted_set.hpp"
[INFO] [stderr]     +++ |+#include <cstdint>
[INFO] [stderr]      16 | 
[INFO] [stderr]   /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/chemfiles-sys-0.7.40/chemfiles/include/chemfiles/Residue.hpp:67:5: error: 'uint64_t' does not name a type
[INFO] [stderr]      67 |     uint64_t id_ = static_cast<uint64_t>(-1);
[INFO] [stderr]         |     ^~~~~~~~
[INFO] [stderr]   /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/chemfiles-sys-0.7.40/chemfiles/include/chemfiles/Residue.hpp:67:5: note: 'uint64_t' is defined in header '<cstdint>'; did you forget to '#include <cstdint>'?
[INFO] [stderr]   /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/chemfiles-sys-0.7.40/chemfiles/include/chemfiles/Residue.hpp:30:69: error: 'uint64_t' does not name a type
[INFO] [stderr]      30 |     explicit Residue(std::string name, uint64_t resid = static_cast<uint64_t>(-1));
[INFO] [stderr]         |                                                                     ^~~~~~~~
[INFO] [stderr]   /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/chemfiles-sys-0.7.40/chemfiles/include/chemfiles/Residue.hpp:30:69: note: 'uint64_t' is defined in header '<cstdint>'; did you forget to '#include <cstdint>'?
[INFO] [stderr]   /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/chemfiles-sys-0.7.40/chemfiles/include/chemfiles/Residue.hpp: In function 'bool chemfiles::operator==(const Residue&, const Residue&)':
[INFO] [stderr]   /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/chemfiles-sys-0.7.40/chemfiles/include/chemfiles/Residue.hpp:74:16: error: 'const class chemfiles::Residue' has no member named 'id'
[INFO] [stderr]      74 |     return lhs.id() == rhs.id() && lhs.name() == rhs.name() &&
[INFO] [stderr]         |                ^~
[INFO] [stderr]   /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/chemfiles-sys-0.7.40/chemfiles/include/chemfiles/Residue.hpp:74:28: error: 'const class chemfiles::Residue' has no member named 'id'
[INFO] [stderr]      74 |     return lhs.id() == rhs.id() && lhs.name() == rhs.name() &&
[INFO] [stderr]         |                            ^~
[INFO] [stderr]   /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/chemfiles-sys-0.7.40/chemfiles/src/Residue.cpp: At global scope:
[INFO] [stderr]   /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/chemfiles-sys-0.7.40/chemfiles/src/Residue.cpp:12:36: error: 'uint64_t' has not been declared
[INFO] [stderr]      12 | Residue::Residue(std::string name, uint64_t resid):
[INFO] [stderr]         |                                    ^~~~~~~~
[INFO] [stderr]   /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/chemfiles-sys-0.7.40/chemfiles/src/Residue.cpp: In constructor 'chemfiles::Residue::Residue(std::string, int)':
[INFO] [stderr]   /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/chemfiles-sys-0.7.40/chemfiles/src/Residue.cpp:13:29: error: class 'chemfiles::Residue' does not have any field named 'id_'
[INFO] [stderr]      13 |     name_(std::move(name)), id_(resid) {}
[INFO] [stderr]         |                             ^~~
[INFO] [stderr]   gmake[2]: *** [chemfiles/CMakeFiles/chemfiles.dir/build.make:160: chemfiles/CMakeFiles/chemfiles.dir/src/Residue.cpp.o] Error 1
[INFO] [stderr]   gmake[2]: *** Waiting for unfinished jobs....
[INFO] [stderr]   In file included from /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/chemfiles-sys-0.7.40/chemfiles/include/chemfiles/Topology.hpp:16,
[INFO] [stderr]                    from /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/chemfiles-sys-0.7.40/chemfiles/src/Topology.cpp:9:
[INFO] [stderr]   /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/chemfiles-sys-0.7.40/chemfiles/include/chemfiles/Residue.hpp:30:40: error: 'uint64_t' has not been declared
[INFO] [stderr]      30 |     explicit Residue(std::string name, uint64_t resid = static_cast<uint64_t>(-1));
[INFO] [stderr]         |                                        ^~~~~~~~
[INFO] [stderr]   /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/chemfiles-sys-0.7.40/chemfiles/include/chemfiles/Residue.hpp:43:5: error: 'uint64_t' does not name a type
[INFO] [stderr]      43 |     uint64_t id() const {
[INFO] [stderr]         |     ^~~~~~~~
[INFO] [stderr]   /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/chemfiles-sys-0.7.40/chemfiles/include/chemfiles/Residue.hpp:1:1: note: 'uint64_t' is defined in header '<cstdint>'; did you forget to '#include <cstdint>'?
[INFO] [stderr]     +++ |+#include <cstdint>
[INFO] [stderr]       1 | // Chemfiles, a modern library for chemistry file reading and writing
[INFO] [stderr]   /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/chemfiles-sys-0.7.40/chemfiles/include/chemfiles/Residue.hpp:67:5: error: 'uint64_t' does not name a type
[INFO] [stderr]      67 |     uint64_t id_ = static_cast<uint64_t>(-1);
[INFO] [stderr]         |     ^~~~~~~~
[INFO] [stderr]   /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/chemfiles-sys-0.7.40/chemfiles/include/chemfiles/Residue.hpp:67:5: note: 'uint64_t' is defined in header '<cstdint>'; did you forget to '#include <cstdint>'?
[INFO] [stderr]   /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/chemfiles-sys-0.7.40/chemfiles/include/chemfiles/Residue.hpp:30:69: error: 'uint64_t' does not name a type
[INFO] [stderr]      30 |     explicit Residue(std::string name, uint64_t resid = static_cast<uint64_t>(-1));
[INFO] [stderr]         |                                                                     ^~~~~~~~
[INFO] [stderr]   /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/chemfiles-sys-0.7.40/chemfiles/include/chemfiles/Residue.hpp:30:69: note: 'uint64_t' is defined in header '<cstdint>'; did you forget to '#include <cstdint>'?
[INFO] [stderr]   /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/chemfiles-sys-0.7.40/chemfiles/include/chemfiles/Residue.hpp: In function 'bool chemfiles::operator==(const Residue&, const Residue&)':
[INFO] [stderr]   /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/chemfiles-sys-0.7.40/chemfiles/include/chemfiles/Residue.hpp:74:16: error: 'const class chemfiles::Residue' has no member named 'id'
[INFO] [stderr]      74 |     return lhs.id() == rhs.id() && lhs.name() == rhs.name() &&
[INFO] [stderr]         |                ^~
[INFO] [stderr]   /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/chemfiles-sys-0.7.40/chemfiles/include/chemfiles/Residue.hpp:74:28: error: 'const class chemfiles::Residue' has no member named 'id'
[INFO] [stderr]      74 |     return lhs.id() == rhs.id() && lhs.name() == rhs.name() &&
[INFO] [stderr]         |                            ^~
[INFO] [stderr]   /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/chemfiles-sys-0.7.40/chemfiles/src/Topology.cpp: In member function 'void chemfiles::Topology::add_residue(chemfiles::Residue)':
[INFO] [stderr]   /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/chemfiles-sys-0.7.40/chemfiles/src/Topology.cpp:96:48: error: '__gnu_cxx::__alloc_traits<std::allocator<chemfiles::Residue>, chemfiles::Residue>::value_type' {aka 'class chemfiles::Residue'} has no member named 'id'
[INFO] [stderr]      96 |             auto resid = residues_[it->second].id();
[INFO] [stderr]         |                                                ^~
[INFO] [stderr]   gmake[2]: *** [chemfiles/CMakeFiles/chemfiles.dir/build.make:188: chemfiles/CMakeFiles/chemfiles.dir/src/Topology.cpp.o] Error 1
[INFO] [stderr]   gmake[1]: *** [CMakeFiles/Makefile2:237: chemfiles/CMakeFiles/chemfiles.dir/all] Error 2
[INFO] [stderr]   gmake: *** [Makefile:136: all] Error 2
[INFO] [stderr] 
[INFO] [stderr]   thread 'main' (69) panicked at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/cmake-0.1.24/src/lib.rs:593:5:
[INFO] [stderr] 
[INFO] [stderr]   command did not execute successfully, got: exit status: 2
[INFO] [stderr] 
[INFO] [stderr]   build script failed, must exit now
[INFO] [stderr]   stack backtrace:
[INFO] [stderr]      0:     0x5f509fee4572 - std::backtrace_rs::backtrace::libunwind::trace::hd46796215bd1e3ee
[INFO] [stderr]                                  at /rustc/0de49ae9e81f9a1e7df6f0783824ce94ed18e8a9/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9
[INFO] [stderr]      1:     0x5f509fee4572 - std::backtrace_rs::backtrace::trace_unsynchronized::h26186455db0996f9
[INFO] [stderr]                                  at /rustc/0de49ae9e81f9a1e7df6f0783824ce94ed18e8a9/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14
[INFO] [stderr]      2:     0x5f509fee4572 - std::sys::backtrace::_print_fmt::h19e83fb5c091e71f
[INFO] [stderr]                                  at /rustc/0de49ae9e81f9a1e7df6f0783824ce94ed18e8a9/library/std/src/sys/backtrace.rs:66:9
[INFO] [stderr]      3:     0x5f509fee4572 - <std::sys::backtrace::BacktraceLock::print::DisplayBacktrace as core::fmt::Display>::fmt::hcb8c7bc5e8b1bfa1
[INFO] [stderr]                                  at /rustc/0de49ae9e81f9a1e7df6f0783824ce94ed18e8a9/library/std/src/sys/backtrace.rs:39:26
[INFO] [stderr]      4:     0x5f509fef3eaf - core::fmt::rt::Argument::fmt::h3352b07ac07cbf93
[INFO] [stderr]                                  at /rustc/0de49ae9e81f9a1e7df6f0783824ce94ed18e8a9/library/core/src/fmt/rt.rs:173:76
[INFO] [stderr]      5:     0x5f509fef3eaf - core::fmt::write::had2134bf47131820
[INFO] [stderr]                                  at /rustc/0de49ae9e81f9a1e7df6f0783824ce94ed18e8a9/library/core/src/fmt/mod.rs:1468:25
[INFO] [stderr]      6:     0x5f509feb6471 - std::io::default_write_fmt::h99dd2bab5b572a86
[INFO] [stderr]                                  at /rustc/0de49ae9e81f9a1e7df6f0783824ce94ed18e8a9/library/std/src/io/mod.rs:639:11
[INFO] [stderr]      7:     0x5f509feb6471 - std::io::Write::write_fmt::hd2c462f7af23bde6
[INFO] [stderr]                                  at /rustc/0de49ae9e81f9a1e7df6f0783824ce94ed18e8a9/library/std/src/io/mod.rs:1954:13
[INFO] [stderr]      8:     0x5f509fec0522 - std::sys::backtrace::BacktraceLock::print::h7e5b07d83c877ada
[INFO] [stderr]                                  at /rustc/0de49ae9e81f9a1e7df6f0783824ce94ed18e8a9/library/std/src/sys/backtrace.rs:42:9
[INFO] [stderr]      9:     0x5f509fec27ec - std::panicking::default_hook::{{closure}}::h5d8e0d94ad1af99a
[INFO] [stderr]                                  at /rustc/0de49ae9e81f9a1e7df6f0783824ce94ed18e8a9/library/std/src/panicking.rs:301:27
[INFO] [stderr]     10:     0x5f509fec2646 - std::panicking::default_hook::h996c12cee52ccebb
[INFO] [stderr]                                  at /rustc/0de49ae9e81f9a1e7df6f0783824ce94ed18e8a9/library/std/src/panicking.rs:328:9
[INFO] [stderr]     11:     0x5f509fec2e75 - std::panicking::panic_with_hook::h1b423b7566c4755b
[INFO] [stderr]                                  at /rustc/0de49ae9e81f9a1e7df6f0783824ce94ed18e8a9/library/std/src/panicking.rs:834:13
[INFO] [stderr]     12:     0x5f509fec2d0a - std::panicking::panic_handler::{{closure}}::h34b23641303ff31e
[INFO] [stderr]                                  at /rustc/0de49ae9e81f9a1e7df6f0783824ce94ed18e8a9/library/std/src/panicking.rs:707:13
[INFO] [stderr]     13:     0x5f509fec0669 - std::sys::backtrace::__rust_end_short_backtrace::hb80a8e6e0b60e111
[INFO] [stderr]                                  at /rustc/0de49ae9e81f9a1e7df6f0783824ce94ed18e8a9/library/std/src/sys/backtrace.rs:174:18
[INFO] [stderr]     14:     0x5f509feaa64d - __rustc[722d17c6171f52c8]::rust_begin_unwind
[INFO] [stderr]                                  at /rustc/0de49ae9e81f9a1e7df6f0783824ce94ed18e8a9/library/std/src/panicking.rs:698:5
[INFO] [stderr]     15:     0x5f509fef78c0 - core::panicking::panic_fmt::ha275882bd49099fb
[INFO] [stderr]                                  at /rustc/0de49ae9e81f9a1e7df6f0783824ce94ed18e8a9/library/core/src/panicking.rs:78:14
[INFO] [stderr]     16:     0x5f509fe8c7fb - cmake::fail::h2829afd7ca67dd50
[INFO] [stderr]     17:     0x5f509fe8c4ba - cmake::run::h4b12c7483ad4ed99
[INFO] [stderr]     18:     0x5f509fe8f8b5 - cmake::Config::build::had75cebef8b70fc7
[INFO] [stderr]     19:     0x5f509fe847cf - build_script_build::main::h7ebff104c58ba44e
[INFO] [stderr]     20:     0x5f509fe858d3 - core::ops::function::FnOnce::call_once::hff82e41131831380
[INFO] [stderr]     21:     0x5f509fe85756 - std::sys::backtrace::__rust_begin_short_backtrace::hcef0f40bc0955924
[INFO] [stderr]     22:     0x5f509fe85689 - std::rt::lang_start::{{closure}}::h9f5a901980c6e349
[INFO] [stderr]     23:     0x5f509feb7ad0 - core::ops::function::impls::<impl core::ops::function::FnOnce<A> for &F>::call_once::hfb14353e1eeb753b
[INFO] [stderr]                                  at /rustc/0de49ae9e81f9a1e7df6f0783824ce94ed18e8a9/library/core/src/ops/function.rs:287:21
[INFO] [stderr]     24:     0x5f509feb7ad0 - std::panicking::catch_unwind::do_call::h898a17a587df7a76
[INFO] [stderr]                                  at /rustc/0de49ae9e81f9a1e7df6f0783824ce94ed18e8a9/library/std/src/panicking.rs:590:40
[INFO] [stderr]     25:     0x5f509feb7ad0 - std::panicking::catch_unwind::hfd0ece50f644bb35
[INFO] [stderr]                                  at /rustc/0de49ae9e81f9a1e7df6f0783824ce94ed18e8a9/library/std/src/panicking.rs:553:19
[INFO] [stderr]     26:     0x5f509feb7ad0 - std::panic::catch_unwind::h9fac8434bbbd802a
[INFO] [stderr]                                  at /rustc/0de49ae9e81f9a1e7df6f0783824ce94ed18e8a9/library/std/src/panic.rs:359:14
[INFO] [stderr]     27:     0x5f509feb7ad0 - std::rt::lang_start_internal::{{closure}}::h4e55b3b4b3d25280
[INFO] [stderr]                                  at /rustc/0de49ae9e81f9a1e7df6f0783824ce94ed18e8a9/library/std/src/rt.rs:175:24
[INFO] [stderr]     28:     0x5f509feb7ad0 - std::panicking::catch_unwind::do_call::h9068dfba3aa54722
[INFO] [stderr]                                  at /rustc/0de49ae9e81f9a1e7df6f0783824ce94ed18e8a9/library/std/src/panicking.rs:590:40
[INFO] [stderr]     29:     0x5f509feb7ad0 - std::panicking::catch_unwind::h7a7ec255fb2e091c
[INFO] [stderr]                                  at /rustc/0de49ae9e81f9a1e7df6f0783824ce94ed18e8a9/library/std/src/panicking.rs:553:19
[INFO] [stderr]     30:     0x5f509feb7ad0 - std::panic::catch_unwind::h5eb767863b33f96d
[INFO] [stderr]                                  at /rustc/0de49ae9e81f9a1e7df6f0783824ce94ed18e8a9/library/std/src/panic.rs:359:14
[INFO] [stderr]     31:     0x5f509feb7ad0 - std::rt::lang_start_internal::hf53ddb54f9604821
[INFO] [stderr]                                  at /rustc/0de49ae9e81f9a1e7df6f0783824ce94ed18e8a9/library/std/src/rt.rs:171:5
[INFO] [stderr]     32:     0x5f509fe85671 - std::rt::lang_start::h848c7a0b8e5911f9
[INFO] [stderr]     33:     0x5f509fe86de5 - main
[INFO] [stderr]     34:     0x7218ca1941ca - <unknown>
[INFO] [stderr]     35:     0x7218ca19428b - __libc_start_main
[INFO] [stderr]     36:     0x5f509fe84525 - _start
[INFO] [stderr]     37:                0x0 - <unknown>
[INFO] running `Command { std: "docker" "inspect" "2173b21a704c4281d0d769550adede21cf971852893ab514ebf2d34893d47578", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "2173b21a704c4281d0d769550adede21cf971852893ab514ebf2d34893d47578", kill_on_drop: false }`
[INFO] [stdout] 2173b21a704c4281d0d769550adede21cf971852893ab514ebf2d34893d47578
