[INFO] cloning repository https://github.com/keithyin/align-hmm
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/keithyin/align-hmm" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fkeithyin%2Falign-hmm", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fkeithyin%2Falign-hmm'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] a0fa9a7347a7f5964fcaa64b15654e3602cbeab4
[INFO] checking keithyin/align-hmm against master#6f34f4ee074ce0affc7bbf4e2c835f66cd576f13 for pr-147017
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fkeithyin%2Falign-hmm" "/workspace/builds/worker-5-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-5-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/keithyin/align-hmm
[INFO] finished tweaking git repo https://github.com/keithyin/align-hmm
[INFO] tweaked toml for git repo https://github.com/keithyin/align-hmm written to /workspace/builds/worker-5-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/keithyin/align-hmm on toolchain 6f34f4ee074ce0affc7bbf4e2c835f66cd576f13
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+6f34f4ee074ce0affc7bbf4e2c835f66cd576f13" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/keithyin/align-hmm already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+6f34f4ee074ce0affc7bbf4e2c835f66cd576f13" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded num_threads v0.1.7
[INFO] [stderr]   Downloaded proc-macro2 v1.0.92
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[INFO] [stderr]   Downloaded rust-htslib v0.49.0
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[INFO] [stderr]   Downloaded clap_derive v4.5.18
[INFO] [stderr]   Downloaded multimap v0.9.1
[INFO] [stderr]   Downloaded anyhow v1.0.94
[INFO] [stderr]   Downloaded simba v0.6.0
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[INFO] [stderr]   Downloaded minimap2-sys v0.1.20+minimap2.2.28
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[INFO] [stderr]   Downloaded strum_macros v0.25.3
[INFO] [stderr]   Downloaded anstyle-wincon v3.0.6
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[INFO] [stderr]   Downloaded fs-utils v1.1.4
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[INFO] [stderr]   Downloaded thiserror-impl v2.0.8
[INFO] [stderr]   Downloaded syn v2.0.90
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[INFO] [stderr]   Downloaded derive-new v0.7.0
[INFO] [stderr]   Downloaded serde_json v1.0.133
[INFO] [stderr]   Downloaded serde v1.0.216
[INFO] [stderr]   Downloaded curl-sys v0.4.78+curl-8.11.0
[INFO] [stderr]   Downloaded hts-sys v2.2.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+6f34f4ee074ce0affc7bbf4e2c835f66cd576f13" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 08864ee9b7bbda780d36bc50b3498ce8eda32403006bc180ee963874b7fb10d2
[INFO] running `Command { std: "docker" "start" "-a" "08864ee9b7bbda780d36bc50b3498ce8eda32403006bc180ee963874b7fb10d2", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "08864ee9b7bbda780d36bc50b3498ce8eda32403006bc180ee963874b7fb10d2", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "08864ee9b7bbda780d36bc50b3498ce8eda32403006bc180ee963874b7fb10d2", kill_on_drop: false }`
[INFO] [stdout] 08864ee9b7bbda780d36bc50b3498ce8eda32403006bc180ee963874b7fb10d2
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+6f34f4ee074ce0affc7bbf4e2c835f66cd576f13" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 32ac0eabc87233c8069fecc1de880795e2e115f67cd78e157eb0a8f86f2bc41f
[INFO] running `Command { std: "docker" "start" "-a" "32ac0eabc87233c8069fecc1de880795e2e115f67cd78e157eb0a8f86f2bc41f", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.92
[INFO] [stderr]    Compiling libc v0.2.168
[INFO] [stderr]    Compiling vcpkg v0.2.15
[INFO] [stderr]    Compiling serde v1.0.216
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[INFO] [stderr]    Compiling matrixmultiply v0.3.9
[INFO] [stderr]     Checking writeable v0.5.5
[INFO] [stderr]    Compiling glob v0.3.1
[INFO] [stderr]    Compiling rustversion v1.0.18
[INFO] [stderr]     Checking aho-corasick v1.1.3
[INFO] [stderr]    Compiling memchr v2.7.4
[INFO] [stderr]    Compiling regex-syntax v0.8.5
[INFO] [stderr]     Checking num-complex v0.4.6
[INFO] [stderr]     Checking num-integer v0.1.46
[INFO] [stderr]     Checking icu_locid_transform_data v1.5.0
[INFO] [stderr]    Compiling minimal-lexical v0.2.1
[INFO] [stderr]    Compiling libloading v0.8.6
[INFO] [stderr]     Checking num-rational v0.4.2
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling bindgen v0.69.5
[INFO] [stderr]     Checking icu_properties_data v1.5.0
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[INFO] [stderr]     Checking smallvec v1.13.2
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[INFO] [stderr]     Checking getrandom v0.2.15
[INFO] [stderr]     Checking wide v0.7.30
[INFO] [stderr]     Checking tracing-core v0.1.33
[INFO] [stderr]    Compiling anyhow v1.0.94
[INFO] [stderr]     Checking equivalent v1.0.1
[INFO] [stderr]    Compiling syn v2.0.90
[INFO] [stderr]     Checking bytecount v0.6.8
[INFO] [stderr]     Checking hashbrown v0.15.2
[INFO] [stderr]     Checking rand_core v0.6.4
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[INFO] [stderr]    Compiling thiserror v2.0.8
[INFO] [stderr]     Checking percent-encoding v2.3.1
[INFO] [stderr]    Compiling regex-automata v0.4.9
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]    Compiling portable-atomic v1.10.0
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[INFO] [stderr]    Compiling openssl-src v300.4.1+3.4.0
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[INFO] [stderr]     Checking regex-syntax v0.6.29
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[INFO] [stderr]     Checking triple_accel v0.4.0
[INFO] [stderr]    Compiling serde_json v1.0.133
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[INFO] [stderr]    Compiling bzip2-sys v0.1.11+1.0.8
[INFO] [stderr]    Compiling minimap2-sys v0.1.20+minimap2.2.28
[INFO] [stderr]     Checking itertools v0.13.0
[INFO] [stderr]     Checking ndarray v0.16.1
[INFO] [stderr]     Checking ordered-float v4.5.0
[INFO] [stderr]     Checking regex-automata v0.1.10
[INFO] [stderr]     Checking buffer-redux v1.0.2
[INFO] [stderr]    Compiling regex v1.11.1
[INFO] [stderr]    Compiling heck v0.4.1
[INFO] [stderr]     Checking unicode-width v0.2.0
[INFO] [stderr]     Checking bit-vec v0.6.3
[INFO] [stderr]     Checking linear-map v1.2.0
[INFO] [stderr]     Checking clap_lex v0.7.4
[INFO] [stderr]     Checking num_threads v0.1.7
[INFO] [stderr]     Checking ieee754 v0.2.6
[INFO] [stderr]     Checking number_prefix v0.4.0
[INFO] [stderr]     Checking num-conv v0.1.0
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[INFO] [stderr]     Checking time-core v0.1.2
[INFO] [stderr]     Checking iana-time-zone v0.1.61
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[INFO] [stderr]     Checking strum v0.26.3
[INFO] [stderr]     Checking time v0.3.37
[INFO] [stderr]     Checking chrono v0.4.39
[INFO] [stderr]     Checking tracing-log v0.2.0
[INFO] [stderr]     Checking indicatif v0.17.9
[INFO] [stderr] error: could not compile `simba` (lib)
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/rustup-home/toolchains/6f34f4ee074ce0affc7bbf4e2c835f66cd576f13/bin/rustc --crate-name simba --edition=2018 /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/simba-0.8.1/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata -C embed-bitcode=no -C debuginfo=2 --cfg 'feature="std"' --cfg 'feature="wide"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("cordic", "cuda", "cuda_std", "cust_core", "decimal", "default", "fixed", "libm", "libm_force", "packed_simd", "partial_fixed_point_support", "rand", "rkyv", "rkyv-serialize", "serde", "serde_serialize", "std", "wide"))' -C metadata=f165c0a492cf9e7f -C extra-filename=-002bfcfcaafddb05 --out-dir /opt/rustwide/target/debug/deps -L dependency=/opt/rustwide/target/debug/deps --extern approx=/opt/rustwide/target/debug/deps/libapprox-dbeff365a66fd8a7.rmeta --extern num_complex=/opt/rustwide/target/debug/deps/libnum_complex-047933215ca38ab1.rmeta --extern num_traits=/opt/rustwide/target/debug/deps/libnum_traits-eac2fb0112f17af5.rmeta --extern paste=/opt/rustwide/target/debug/deps/libpaste-de6dfd786916684a.so --extern wide=/opt/rustwide/target/debug/deps/libwide-07eadf7ee8c1640d.rmeta --cap-lints allow --cap-lints=forbid` (signal: 9, SIGKILL: kill)
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] [stderr] error: could not compile `simba` (lib)
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/rustup-home/toolchains/6f34f4ee074ce0affc7bbf4e2c835f66cd576f13/bin/rustc --crate-name simba --edition=2018 /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/simba-0.6.0/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata -C embed-bitcode=no -C debuginfo=2 --cfg 'feature="std"' --cfg 'feature="wide"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("cordic", "decimal", "default", "fixed", "libm", "libm_force", "packed_simd", "partial_fixed_point_support", "rand", "serde", "serde_serialize", "std", "wide"))' -C metadata=e044352372aa2d68 -C extra-filename=-4297b6521f52e6f4 --out-dir /opt/rustwide/target/debug/deps -L dependency=/opt/rustwide/target/debug/deps --extern approx=/opt/rustwide/target/debug/deps/libapprox-dbeff365a66fd8a7.rmeta --extern num_complex=/opt/rustwide/target/debug/deps/libnum_complex-047933215ca38ab1.rmeta --extern num_traits=/opt/rustwide/target/debug/deps/libnum_traits-eac2fb0112f17af5.rmeta --extern paste=/opt/rustwide/target/debug/deps/libpaste-de6dfd786916684a.so --extern wide=/opt/rustwide/target/debug/deps/libwide-07eadf7ee8c1640d.rmeta --cap-lints allow --cap-lints=forbid` (signal: 9, SIGKILL: kill)
[INFO] running `Command { std: "docker" "inspect" "32ac0eabc87233c8069fecc1de880795e2e115f67cd78e157eb0a8f86f2bc41f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "32ac0eabc87233c8069fecc1de880795e2e115f67cd78e157eb0a8f86f2bc41f", kill_on_drop: false }`
[INFO] [stdout] 32ac0eabc87233c8069fecc1de880795e2e115f67cd78e157eb0a8f86f2bc41f