[INFO] cloning repository https://github.com/dlejeune/collapse-expand-fasta
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/dlejeune/collapse-expand-fasta" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fdlejeune%2Fcollapse-expand-fasta", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fdlejeune%2Fcollapse-expand-fasta'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 8b3fdd5f38ab6a88f785eded90929652169170e2
[INFO] testing dlejeune/collapse-expand-fasta against try#a7ee93192a766fb0dafa23def7154fc03cfcfc3e for pr-146989
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fdlejeune%2Fcollapse-expand-fasta" "/workspace/builds/worker-4-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-4-tc2/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/dlejeune/collapse-expand-fasta
[INFO] finished tweaking git repo https://github.com/dlejeune/collapse-expand-fasta
[INFO] tweaked toml for git repo https://github.com/dlejeune/collapse-expand-fasta written to /workspace/builds/worker-4-tc2/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/dlejeune/collapse-expand-fasta on toolchain a7ee93192a766fb0dafa23def7154fc03cfcfc3e
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+a7ee93192a766fb0dafa23def7154fc03cfcfc3e" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/dlejeune/collapse-expand-fasta already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+a7ee93192a766fb0dafa23def7154fc03cfcfc3e" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]     Blocking waiting for file lock on package cache
[ERROR] error running command: no output for 300 seconds
[INFO] testing dlejeune/collapse-expand-fasta against try#a7ee93192a766fb0dafa23def7154fc03cfcfc3e for pr-146989
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fdlejeune%2Fcollapse-expand-fasta" "/workspace/builds/worker-4-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-4-tc2/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/dlejeune/collapse-expand-fasta
[INFO] finished tweaking git repo https://github.com/dlejeune/collapse-expand-fasta
[INFO] tweaked toml for git repo https://github.com/dlejeune/collapse-expand-fasta written to /workspace/builds/worker-4-tc2/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/dlejeune/collapse-expand-fasta on toolchain a7ee93192a766fb0dafa23def7154fc03cfcfc3e
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+a7ee93192a766fb0dafa23def7154fc03cfcfc3e" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/dlejeune/collapse-expand-fasta already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+a7ee93192a766fb0dafa23def7154fc03cfcfc3e" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded simple_logger v5.0.0
[INFO] [stderr]   Downloaded itertools-num v0.1.3
[INFO] [stderr]   Downloaded derive-new v0.6.0
[INFO] [stderr]   Downloaded editdistancek v1.0.2
[INFO] [stderr]   Downloaded bio-types v1.0.4
[INFO] [stderr]   Downloaded ordered-float v4.3.0
[INFO] [stderr]   Downloaded triple_accel v0.4.0
[INFO] [stderr]   Downloaded portable-atomic-util v0.2.2
[INFO] [stderr]   Downloaded clap v4.5.18
[INFO] [stderr]   Downloaded statrs v0.17.1
[INFO] [stderr]   Downloaded clap_builder v4.5.18
[INFO] [stderr]   Downloaded newtype_derive v0.1.6
[INFO] [stderr]   Downloaded clap_lex v0.7.2
[INFO] [stderr]   Downloaded bio v2.0.3
[INFO] [stderr]   Downloaded nalgebra v0.32.6
[INFO] [stderr]   Downloaded csv v1.3.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:98afbf2d16093dec2546ff8915fddc74e65664aa03fc460b3712b1c2c54a33e4" "/opt/rustwide/cargo-home/bin/cargo" "+a7ee93192a766fb0dafa23def7154fc03cfcfc3e" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] fc87c7f19b3c85961490ed6e22b3ad406f155b817a499de642bbeac4b71ebaa1
[INFO] running `Command { std: "docker" "start" "-a" "fc87c7f19b3c85961490ed6e22b3ad406f155b817a499de642bbeac4b71ebaa1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "fc87c7f19b3c85961490ed6e22b3ad406f155b817a499de642bbeac4b71ebaa1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "fc87c7f19b3c85961490ed6e22b3ad406f155b817a499de642bbeac4b71ebaa1", kill_on_drop: false }`
[INFO] [stdout] fc87c7f19b3c85961490ed6e22b3ad406f155b817a499de642bbeac4b71ebaa1
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:98afbf2d16093dec2546ff8915fddc74e65664aa03fc460b3712b1c2c54a33e4" "/opt/rustwide/cargo-home/bin/cargo" "+a7ee93192a766fb0dafa23def7154fc03cfcfc3e" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 5d42d8ace76faf37b26fa6a649e1046dc436073bbc204eca525b76fc095deeb5
[INFO] running `Command { std: "docker" "start" "-a" "5d42d8ace76faf37b26fa6a649e1046dc436073bbc204eca525b76fc095deeb5", kill_on_drop: false }`
[INFO] [stderr]    Compiling unicode-ident v1.0.13
[INFO] [stderr]    Compiling libc v0.2.159
[INFO] [stderr]    Compiling serde v1.0.210
[INFO] [stderr]    Compiling bytemuck v1.18.0
[INFO] [stderr]    Compiling rustversion v1.0.17
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling matrixmultiply v0.3.9
[INFO] [stderr]    Compiling thiserror v1.0.64
[INFO] [stderr]    Compiling anyhow v1.0.89
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]    Compiling regex-automata v0.4.8
[INFO] [stderr]    Compiling indexmap v2.5.0
[INFO] [stderr]    Compiling time-macros v0.2.18
[INFO] [stderr]    Compiling anstream v0.6.15
[INFO] [stderr]    Compiling csv-core v0.1.11
[INFO] [stderr]    Compiling num_threads v0.1.7
[INFO] [stderr]    Compiling proc-macro2 v1.0.86
[INFO] [stderr]    Compiling safe_arch v0.7.2
[INFO] [stderr]    Compiling bit-vec v0.8.0
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling either v1.13.0
[INFO] [stderr]    Compiling clap_lex v0.7.2
[INFO] [stderr]    Compiling serde_json v1.0.128
[INFO] [stderr]    Compiling bit-set v0.8.0
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling clap_builder v4.5.18
[INFO] [stderr]    Compiling petgraph v0.6.5
[INFO] [stderr]    Compiling colored v2.1.0
[INFO] [stderr]    Compiling num-integer v0.1.46
[INFO] [stderr]    Compiling num-complex v0.4.6
[INFO] [stderr]    Compiling approx v0.5.1
[INFO] [stderr]    Compiling itertools v0.13.0
[INFO] [stderr]    Compiling wide v0.7.28
[INFO] [stderr]    Compiling itertools-num v0.1.3
[INFO] [stderr]    Compiling ordered-float v4.3.0
[INFO] [stderr]    Compiling quote v1.0.37
[INFO] [stderr]    Compiling num-rational v0.4.2
[INFO] [stderr]    Compiling bytecount v0.6.8
[INFO] [stderr]    Compiling ndarray v0.16.1
[INFO] [stderr]    Compiling strum v0.26.3
[INFO] [stderr]    Compiling triple_accel v0.4.0
[INFO] [stderr]    Compiling editdistancek v1.0.2
[INFO] [stderr]    Compiling syn v2.0.79
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling getrandom v0.2.15
[INFO] [stderr]    Compiling time v0.3.36
[INFO] [stderr]    Compiling rand_core v0.6.4
[INFO] [stderr]    Compiling simba v0.8.1
[INFO] [stderr]    Compiling simple_logger v5.0.0
[INFO] [stderr]    Compiling regex v1.11.0
[INFO] [stderr]    Compiling zerocopy-derive v0.7.35
[INFO] [stderr]    Compiling serde_derive v1.0.210
[INFO] [stderr]    Compiling thiserror-impl v1.0.64
[INFO] [stderr]    Compiling nalgebra-macros v0.2.2
[INFO] [stderr]    Compiling strum_macros v0.26.4
[INFO] [stderr]    Compiling derive-new v0.6.0
[INFO] [stderr]    Compiling enum-map-derive v0.17.0
[INFO] [stderr]    Compiling clap_derive v4.5.18
[INFO] [stderr]    Compiling enum-map v2.7.3
[INFO] [stderr]    Compiling zerocopy v0.7.35
[INFO] [stderr]    Compiling ppv-lite86 v0.2.20
[INFO] [stderr]    Compiling rand_chacha v0.3.1
[INFO] [stderr]    Compiling clap v4.5.18
[INFO] [stderr]    Compiling bio-types v1.0.4
[INFO] [stderr]    Compiling rand v0.8.5
[INFO] [stderr]    Compiling rand_distr v0.4.3
[INFO] [stderr]    Compiling nalgebra v0.32.6
[INFO] [stderr]    Compiling multimap v0.10.0
[INFO] [stderr]    Compiling vec_map v0.8.2
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]    Compiling csv v1.3.0
[INFO] [stderr]    Compiling statrs v0.17.1
[INFO] [stderr]    Compiling bio v2.0.3
[INFO] [stderr]    Compiling collapse-expand-fasta v0.2.1 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 44.65s
[INFO] running `Command { std: "docker" "inspect" "5d42d8ace76faf37b26fa6a649e1046dc436073bbc204eca525b76fc095deeb5", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "5d42d8ace76faf37b26fa6a649e1046dc436073bbc204eca525b76fc095deeb5", kill_on_drop: false }`
[INFO] [stdout] 5d42d8ace76faf37b26fa6a649e1046dc436073bbc204eca525b76fc095deeb5
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:98afbf2d16093dec2546ff8915fddc74e65664aa03fc460b3712b1c2c54a33e4" "/opt/rustwide/cargo-home/bin/cargo" "+a7ee93192a766fb0dafa23def7154fc03cfcfc3e" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 7ce1fe58c0d0a9c8ab951b2ead97e18e5f8e6442b2686d641bd70e37b6602c2b
[INFO] running `Command { std: "docker" "start" "-a" "7ce1fe58c0d0a9c8ab951b2ead97e18e5f8e6442b2686d641bd70e37b6602c2b", kill_on_drop: false }`
[INFO] [stderr]    Compiling collapse-expand-fasta v0.2.1 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.67s
[INFO] running `Command { std: "docker" "inspect" "7ce1fe58c0d0a9c8ab951b2ead97e18e5f8e6442b2686d641bd70e37b6602c2b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "7ce1fe58c0d0a9c8ab951b2ead97e18e5f8e6442b2686d641bd70e37b6602c2b", kill_on_drop: false }`
[INFO] [stdout] 7ce1fe58c0d0a9c8ab951b2ead97e18e5f8e6442b2686d641bd70e37b6602c2b
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:98afbf2d16093dec2546ff8915fddc74e65664aa03fc460b3712b1c2c54a33e4" "/opt/rustwide/cargo-home/bin/cargo" "+a7ee93192a766fb0dafa23def7154fc03cfcfc3e" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] c2d22c6203b77d63222bbc9dedcc0dffd728aad788e0a49f7b89c79de4212dc2
[INFO] running `Command { std: "docker" "start" "-a" "c2d22c6203b77d63222bbc9dedcc0dffd728aad788e0a49f7b89c79de4212dc2", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.19s
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/debug/deps/collapse_expand_fasta-1163d2696f1b7453)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "c2d22c6203b77d63222bbc9dedcc0dffd728aad788e0a49f7b89c79de4212dc2", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "c2d22c6203b77d63222bbc9dedcc0dffd728aad788e0a49f7b89c79de4212dc2", kill_on_drop: false }`
[INFO] [stdout] c2d22c6203b77d63222bbc9dedcc0dffd728aad788e0a49f7b89c79de4212dc2