[INFO] cloning repository https://github.com/JoseBlanca/vcf_parser_rs [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/JoseBlanca/vcf_parser_rs" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FJoseBlanca%2Fvcf_parser_rs", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FJoseBlanca%2Fvcf_parser_rs'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 1fcfc19135dc128abd2350af66a086f4fce5d4f6 [INFO] testing JoseBlanca/vcf_parser_rs/1fcfc19135dc128abd2350af66a086f4fce5d4f6 against master#7704328ba5ae8d6ce0ac303c9d5a1a1605906766 for pr-146989 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FJoseBlanca%2Fvcf_parser_rs" "/workspace/builds/worker-7-tc1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-7-tc1/source'... [INFO] [stderr] done. [INFO] started tweaking git repo https://github.com/JoseBlanca/vcf_parser_rs [INFO] finished tweaking git repo https://github.com/JoseBlanca/vcf_parser_rs [INFO] tweaked toml for git repo https://github.com/JoseBlanca/vcf_parser_rs written to /workspace/builds/worker-7-tc1/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/JoseBlanca/vcf_parser_rs on toolchain 7704328ba5ae8d6ce0ac303c9d5a1a1605906766 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+7704328ba5ae8d6ce0ac303c9d5a1a1605906766" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/JoseBlanca/vcf_parser_rs already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+7704328ba5ae8d6ce0ac303c9d5a1a1605906766" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded rustc_version v0.1.7 [INFO] [stderr] Downloaded smallvec v1.15.0 [INFO] [stderr] Downloaded cmake v0.1.54 [INFO] [stderr] Downloaded newtype_derive v0.1.6 [INFO] [stderr] Downloaded semver v0.1.20 [INFO] [stderr] Downloaded target-lexicon v0.13.2 [INFO] [stderr] Downloaded derive-new v0.7.0 [INFO] [stderr] Downloaded quick-error v1.2.3 [INFO] [stderr] Downloaded lazycell v1.3.0 [INFO] [stderr] Downloaded memoffset v0.9.1 [INFO] [stderr] Downloaded derive-new v0.6.0 [INFO] [stderr] Downloaded libz-rs-sys v0.5.1 [INFO] [stderr] Downloaded pyo3-build-config v0.25.1 [INFO] [stderr] Downloaded bio-types v1.0.4 [INFO] [stderr] Downloaded cc v1.2.23 [INFO] [stderr] Downloaded flate2 v1.1.1 [INFO] [stderr] Downloaded pyo3-ffi v0.25.1 [INFO] [stderr] Downloaded openssl-sys v0.9.108 [INFO] [stderr] Downloaded rust-htslib v0.49.0 [INFO] [stderr] Downloaded bindgen v0.69.5 [INFO] [stderr] Downloaded zlib-rs v0.5.1 [INFO] [stderr] Downloaded portable-atomic v1.11.1 [INFO] [stderr] Downloaded libloading v0.8.7 [INFO] [stderr] Downloaded indoc v2.0.6 [INFO] [stderr] Downloaded unindent v0.2.4 [INFO] [stderr] Downloaded ieee754 v0.2.6 [INFO] [stderr] Downloaded custom_derive v0.1.7 [INFO] [stderr] Downloaded windows-targets v0.53.0 [INFO] [stderr] Downloaded fs-utils v1.1.4 [INFO] [stderr] Downloaded pyo3-macros v0.25.1 [INFO] [stderr] Downloaded linear-map v1.2.0 [INFO] [stderr] Downloaded lzma-sys v0.1.20 [INFO] [stderr] Downloaded pyo3 v0.25.1 [INFO] [stderr] Downloaded curl-sys v0.4.80+curl-8.12.1 [INFO] [stderr] Downloaded libz-sys v1.1.22 [INFO] [stderr] Downloaded hts-sys v2.2.0 [INFO] [stderr] Downloaded openssl-src v300.5.0+3.5.0 [INFO] [stderr] Downloaded pyo3-macros-backend v0.25.1 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:98afbf2d16093dec2546ff8915fddc74e65664aa03fc460b3712b1c2c54a33e4" "/opt/rustwide/cargo-home/bin/cargo" "+7704328ba5ae8d6ce0ac303c9d5a1a1605906766" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 96f917d9bc0c7418e7dcc3a0c455635dbe63f11e58ec9216ea10240e6435bd9f [INFO] running `Command { std: "docker" "start" "-a" "96f917d9bc0c7418e7dcc3a0c455635dbe63f11e58ec9216ea10240e6435bd9f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "96f917d9bc0c7418e7dcc3a0c455635dbe63f11e58ec9216ea10240e6435bd9f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "96f917d9bc0c7418e7dcc3a0c455635dbe63f11e58ec9216ea10240e6435bd9f", kill_on_drop: false }` [INFO] [stdout] 96f917d9bc0c7418e7dcc3a0c455635dbe63f11e58ec9216ea10240e6435bd9f [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:98afbf2d16093dec2546ff8915fddc74e65664aa03fc460b3712b1c2c54a33e4" "/opt/rustwide/cargo-home/bin/cargo" "+7704328ba5ae8d6ce0ac303c9d5a1a1605906766" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 136cf9b902edb21169bea52b285160aeaa5ea07e0b802b2ec679d65f5e4d7fdc [INFO] running `Command { std: "docker" "start" "-a" "136cf9b902edb21169bea52b285160aeaa5ea07e0b802b2ec679d65f5e4d7fdc", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.95 [INFO] [stderr] Compiling unicode-ident v1.0.18 [INFO] [stderr] Compiling libc v0.2.172 [INFO] [stderr] Compiling shlex v1.3.0 [INFO] [stderr] Compiling pkg-config v0.3.32 [INFO] [stderr] Compiling target-lexicon v0.13.2 [INFO] [stderr] Compiling stable_deref_trait v1.2.0 [INFO] [stderr] Compiling once_cell v1.21.3 [INFO] [stderr] Compiling vcpkg v0.2.15 [INFO] [stderr] Compiling memchr v2.7.4 [INFO] [stderr] Compiling glob v0.3.2 [INFO] [stderr] Compiling writeable v0.6.1 [INFO] [stderr] Compiling litemap v0.8.0 [INFO] [stderr] Compiling minimal-lexical v0.2.1 [INFO] [stderr] Compiling icu_normalizer_data v2.0.0 [INFO] [stderr] Compiling icu_properties_data v2.0.1 [INFO] [stderr] Compiling regex-syntax v0.8.5 [INFO] [stderr] Compiling libloading v0.8.7 [INFO] [stderr] Compiling lazy_static v1.5.0 [INFO] [stderr] Compiling bindgen v0.69.5 [INFO] [stderr] Compiling either v1.15.0 [INFO] [stderr] Compiling heck v0.5.0 [INFO] [stderr] Compiling lazycell v1.3.0 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling itertools v0.12.1 [INFO] [stderr] Compiling rustc-hash v1.1.0 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Compiling smallvec v1.15.0 [INFO] [stderr] Compiling rustversion v1.0.21 [INFO] [stderr] Compiling nom v7.1.3 [INFO] [stderr] Compiling bitflags v2.9.1 [INFO] [stderr] Compiling clang-sys v1.8.1 [INFO] [stderr] Compiling fs-utils v1.1.4 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling aho-corasick v1.1.3 [INFO] [stderr] Compiling autocfg v1.5.0 [INFO] [stderr] Compiling quote v1.0.40 [INFO] [stderr] Compiling thiserror v1.0.69 [INFO] [stderr] Compiling percent-encoding v2.3.1 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling jobserver v0.1.33 [INFO] [stderr] Compiling syn v2.0.101 [INFO] [stderr] Compiling pyo3-build-config v0.25.1 [INFO] [stderr] Compiling thiserror v2.0.12 [INFO] [stderr] Compiling utf8_iter v1.0.4 [INFO] [stderr] Compiling form_urlencoded v1.2.1 [INFO] [stderr] Compiling zlib-rs v0.5.1 [INFO] [stderr] Compiling crc32fast v1.4.2 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling linear-map v1.2.0 [INFO] [stderr] Compiling memoffset v0.9.1 [INFO] [stderr] Compiling unindent v0.2.4 [INFO] [stderr] Compiling byteorder v1.5.0 [INFO] [stderr] Compiling indoc v2.0.6 [INFO] [stderr] Compiling cc v1.2.23 [INFO] [stderr] Compiling ieee754 v0.2.6 [INFO] [stderr] Compiling regex-automata v0.4.9 [INFO] [stderr] Compiling pyo3-macros-backend v0.25.1 [INFO] [stderr] Compiling pyo3-ffi v0.25.1 [INFO] [stderr] Compiling pyo3 v0.25.1 [INFO] [stderr] Compiling cmake v0.1.54 [INFO] [stderr] Compiling openssl-src v300.5.0+3.5.0 [INFO] [stderr] Compiling cexpr v0.6.0 [INFO] [stderr] Compiling openssl-sys v0.9.108 [INFO] [stderr] Compiling lzma-sys v0.1.20 [INFO] [stderr] Compiling curl-sys v0.4.80+curl-8.12.1 [INFO] [stderr] Compiling bzip2-sys v0.1.13+1.0.8 [INFO] [stderr] Compiling libz-sys v1.1.22 [INFO] [stderr] Compiling regex v1.11.1 [INFO] [stderr] Compiling libz-rs-sys v0.5.1 [INFO] [stderr] Compiling flate2 v1.1.1 [INFO] [stderr] Compiling synstructure v0.13.2 [INFO] [stderr] Compiling zerovec-derive v0.11.1 [INFO] [stderr] Compiling displaydoc v0.2.5 [INFO] [stderr] Compiling thiserror-impl v1.0.69 [INFO] [stderr] Compiling strum_macros v0.26.4 [INFO] [stderr] Compiling thiserror-impl v2.0.12 [INFO] [stderr] Compiling derive-new v0.6.0 [INFO] [stderr] Compiling derive-new v0.7.0 [INFO] [stderr] Compiling zerofrom-derive v0.1.6 [INFO] [stderr] Compiling yoke-derive v0.8.0 [INFO] [stderr] Compiling zerofrom v0.1.6 [INFO] [stderr] Compiling yoke v0.8.0 [INFO] [stderr] Compiling zerovec v0.11.2 [INFO] [stderr] Compiling zerotrie v0.2.2 [INFO] [stderr] Compiling bio-types v1.0.4 [INFO] [stderr] Compiling tinystr v0.8.1 [INFO] [stderr] Compiling potential_utf v0.1.2 [INFO] [stderr] Compiling icu_collections v2.0.0 [INFO] [stderr] Compiling icu_locale_core v2.0.0 [INFO] [stderr] Compiling hts-sys v2.2.0 [INFO] [stderr] Compiling pyo3-macros v0.25.1 [INFO] [stderr] Compiling icu_provider v2.0.0 [INFO] [stderr] Compiling icu_normalizer v2.0.0 [INFO] [stderr] Compiling icu_properties v2.0.1 [INFO] [stderr] Compiling idna_adapter v1.2.1 [INFO] [stderr] Compiling idna v1.0.3 [INFO] [stderr] Compiling url v2.5.4 [INFO] [stderr] Compiling rust-htslib v0.49.0 [INFO] [stderr] Compiling vcfparser v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 3m 23s [INFO] running `Command { std: "docker" "inspect" "136cf9b902edb21169bea52b285160aeaa5ea07e0b802b2ec679d65f5e4d7fdc", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "136cf9b902edb21169bea52b285160aeaa5ea07e0b802b2ec679d65f5e4d7fdc", kill_on_drop: false }` [INFO] [stdout] 136cf9b902edb21169bea52b285160aeaa5ea07e0b802b2ec679d65f5e4d7fdc [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:98afbf2d16093dec2546ff8915fddc74e65664aa03fc460b3712b1c2c54a33e4" "/opt/rustwide/cargo-home/bin/cargo" "+7704328ba5ae8d6ce0ac303c9d5a1a1605906766" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 884ca9d32475b8c7a82effb759f9325738261605d63a135fe3302290e96b708d [INFO] running `Command { std: "docker" "start" "-a" "884ca9d32475b8c7a82effb759f9325738261605d63a135fe3302290e96b708d", kill_on_drop: false }` [INFO] [stderr] Compiling vcfparser v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused variable: `path` [INFO] [stdout] --> tests/region_split_test.rs:139:9 [INFO] [stdout] | [INFO] [stdout] 139 | let path = "sample_files/sample.g.vcf.gz"; [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_path` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 2.28s [INFO] running `Command { std: "docker" "inspect" "884ca9d32475b8c7a82effb759f9325738261605d63a135fe3302290e96b708d", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "884ca9d32475b8c7a82effb759f9325738261605d63a135fe3302290e96b708d", kill_on_drop: false }` [INFO] [stdout] 884ca9d32475b8c7a82effb759f9325738261605d63a135fe3302290e96b708d [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:98afbf2d16093dec2546ff8915fddc74e65664aa03fc460b3712b1c2c54a33e4" "/opt/rustwide/cargo-home/bin/cargo" "+7704328ba5ae8d6ce0ac303c9d5a1a1605906766" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 595e4127716b5c039aee0d79df27067e3ccf85b90f080ead14755355dd1dfb51 [INFO] running `Command { std: "docker" "start" "-a" "595e4127716b5c039aee0d79df27067e3ccf85b90f080ead14755355dd1dfb51", kill_on_drop: false }` [INFO] [stderr] warning: unused variable: `path` [INFO] [stderr] --> tests/region_split_test.rs:139:9 [INFO] [stderr] | [INFO] [stderr] 139 | let path = "sample_files/sample.g.vcf.gz"; [INFO] [stderr] | ^^^^ help: if this is intentional, prefix it with an underscore: `_path` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default [INFO] [stderr] [INFO] [stderr] warning: `vcfparser` (test "region_split_test") generated 1 warning (run `cargo fix --test "region_split_test" -p vcfparser` to apply 1 suggestion) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.16s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/vcfparser-6ff3a4bc9d60b3a6) [INFO] [stdout] [INFO] [stderr] Running tests/integration_test.rs (/opt/rustwide/target/debug/deps/integration_test-b5f315d7b8b13731) [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 2 tests [INFO] [stdout] test test_parse_vcf_iter ... ok [INFO] [stdout] test test_performance ... FAILED [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] [INFO] [stdout] ---- test_performance stdout ---- [INFO] [stdout] Error: Io { source: Os { code: 2, kind: NotFound, message: "No such file or directory" } } [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] test_performance [INFO] [stdout] [INFO] [stdout] test result: FAILED. 1 passed; 1 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] error: test failed, to rerun pass `--test integration_test` [INFO] running `Command { std: "docker" "inspect" "595e4127716b5c039aee0d79df27067e3ccf85b90f080ead14755355dd1dfb51", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "595e4127716b5c039aee0d79df27067e3ccf85b90f080ead14755355dd1dfb51", kill_on_drop: false }` [INFO] [stdout] 595e4127716b5c039aee0d79df27067e3ccf85b90f080ead14755355dd1dfb51