[INFO] cloning repository https://github.com/koisland/rs-nucflag [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/koisland/rs-nucflag" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fkoisland%2Frs-nucflag", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fkoisland%2Frs-nucflag'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] d6db751f721e01caf04dc27f2077f0830fe84717 [INFO] checking koisland/rs-nucflag/d6db751f721e01caf04dc27f2077f0830fe84717 against master#4068bafedd8ba724e332a5221c06a6fa531a30d2 for pr-146978 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fkoisland%2Frs-nucflag" "/workspace/builds/worker-5-tc1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-5-tc1/source'... [INFO] [stderr] done. [INFO] started tweaking git repo https://github.com/koisland/rs-nucflag [INFO] finished tweaking git repo https://github.com/koisland/rs-nucflag [INFO] tweaked toml for git repo https://github.com/koisland/rs-nucflag written to /workspace/builds/worker-5-tc1/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/koisland/rs-nucflag on toolchain 4068bafedd8ba724e332a5221c06a6fa531a30d2 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+4068bafedd8ba724e332a5221c06a6fa531a30d2" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/koisland/rs-nucflag already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+4068bafedd8ba724e332a5221c06a6fa531a30d2" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Updating git repository `https://github.com/logsdon-lab/rs-moddotplot.git` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded noodles-core v0.17.0 [INFO] [stderr] Downloaded libz-rs-sys v0.5.1 [INFO] [stderr] Downloaded lexical-core v1.0.5 [INFO] [stderr] Downloaded unindent v0.2.4 [INFO] [stderr] Downloaded noodles-bgzf v0.38.0 [INFO] [stderr] Downloaded array-init-cursor v0.2.1 [INFO] [stderr] Downloaded simple_logger v5.0.0 [INFO] [stderr] Downloaded lz4 v1.28.1 [INFO] [stderr] Downloaded castaway v0.2.3 [INFO] [stderr] Downloaded polars-error v0.46.0 [INFO] [stderr] Downloaded pyo3-macros v0.23.5 [INFO] [stderr] Downloaded noodles-core v0.16.0 [INFO] [stderr] Downloaded bytemuck_derive v1.9.3 [INFO] [stderr] Downloaded atoi_simd v0.16.1 [INFO] [stderr] Downloaded noodles v0.91.0 [INFO] [stderr] Downloaded noodles-bgzf v0.36.0 [INFO] [stderr] Downloaded noodles-sam v0.72.0 [INFO] [stderr] Downloaded polars-lazy v0.46.0 [INFO] [stderr] Downloaded clap_builder v4.5.39 [INFO] [stderr] Downloaded polars-parquet v0.46.0 [INFO] [stderr] Downloaded polars-plan v0.46.0 [INFO] [stderr] Downloaded lexical-write-integer v1.0.5 [INFO] [stderr] Downloaded chrono-tz v0.10.3 [INFO] [stderr] Downloaded sqlparser v0.53.0 [INFO] [stderr] Downloaded pyo3 v0.23.5 [INFO] [stderr] Downloaded noodles v0.96.0 [INFO] [stderr] Downloaded debug_unsafe v0.1.3 [INFO] [stderr] Downloaded polars-mem-engine v0.46.0 [INFO] [stderr] Downloaded polars-core v0.46.0 [INFO] [stderr] Downloaded polars-compute v0.46.0 [INFO] [stderr] Downloaded chrono-tz-build v0.4.1 [INFO] [stderr] Downloaded polars-arrow v0.46.0 [INFO] [stderr] Downloaded lexical-parse-float v1.0.5 [INFO] [stderr] Downloaded polars v0.46.0 [INFO] [stderr] Downloaded argminmax v0.6.3 [INFO] [stderr] Downloaded polars-io v0.46.0 [INFO] [stderr] Downloaded polars-ops v0.46.0 [INFO] [stderr] Downloaded bumpalo v3.18.1 [INFO] [stderr] Downloaded noodles-cram v0.81.0 [INFO] [stderr] Downloaded zlib-rs v0.5.1 [INFO] [stderr] Downloaded polars-sql v0.46.0 [INFO] [stderr] Downloaded lexical-write-float v1.0.5 [INFO] [stderr] Downloaded lexical-util v1.0.6 [INFO] [stderr] Downloaded noodles-sam v0.74.0 [INFO] [stderr] Downloaded noodles-csi v0.44.0 [INFO] [stderr] Downloaded pyo3-ffi v0.23.5 [INFO] [stderr] Downloaded clap v4.5.39 [INFO] [stderr] Downloaded cc v1.2.26 [INFO] [stderr] Downloaded lexical-parse-integer v1.0.5 [INFO] [stderr] Downloaded polars-expr v0.46.0 [INFO] [stderr] Downloaded polars-stream v0.46.0 [INFO] [stderr] Downloaded polars-time v0.46.0 [INFO] [stderr] Downloaded noodles-bam v0.78.0 [INFO] [stderr] Downloaded noodles-bam v0.76.0 [INFO] [stderr] Downloaded polars-pipe v0.46.0 [INFO] [stderr] Downloaded polars-parquet-format v0.1.0 [INFO] [stderr] Downloaded comfy-table v7.1.4 [INFO] [stderr] Downloaded ethnum v1.5.2 [INFO] [stderr] Downloaded noodles-fasta v0.51.0 [INFO] [stderr] Downloaded pyo3-build-config v0.23.5 [INFO] [stderr] Downloaded pyo3-macros-backend v0.23.5 [INFO] [stderr] Downloaded fast-float2 v0.2.3 [INFO] [stderr] Downloaded polars-utils v0.46.0 [INFO] [stderr] Downloaded polars-schema v0.46.0 [INFO] [stderr] Downloaded noodles-csi v0.46.0 [INFO] [stderr] Downloaded polars-row v0.46.0 [INFO] [stderr] Downloaded suffix v1.3.0 [INFO] [stderr] Downloaded pyo3-polars v0.20.0 [INFO] [stderr] Downloaded coitrees v0.4.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+4068bafedd8ba724e332a5221c06a6fa531a30d2" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] a4eaac17ef058f1dd82238551bd6cee513083606186ffd7b5277bf31c2262560 [INFO] running `Command { std: "docker" "start" "-a" "a4eaac17ef058f1dd82238551bd6cee513083606186ffd7b5277bf31c2262560", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "a4eaac17ef058f1dd82238551bd6cee513083606186ffd7b5277bf31c2262560", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "a4eaac17ef058f1dd82238551bd6cee513083606186ffd7b5277bf31c2262560", kill_on_drop: false }` [INFO] [stdout] a4eaac17ef058f1dd82238551bd6cee513083606186ffd7b5277bf31c2262560 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+4068bafedd8ba724e332a5221c06a6fa531a30d2" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 2cfa5b76b7593fc0c46f3a093de5ae76cacbcb280a93143381ddcefda5cdceea [INFO] running `Command { std: "docker" "start" "-a" "2cfa5b76b7593fc0c46f3a093de5ae76cacbcb280a93143381ddcefda5cdceea", kill_on_drop: false }` [INFO] [stderr] Compiling serde v1.0.219 [INFO] [stderr] Compiling cc v1.2.26 [INFO] [stderr] Checking either v1.15.0 [INFO] [stderr] Checking allocator-api2 v0.2.21 [INFO] [stderr] Compiling syn v2.0.101 [INFO] [stderr] Checking equivalent v1.0.2 [INFO] [stderr] Checking foldhash v0.1.5 [INFO] [stderr] Compiling zerocopy v0.8.25 [INFO] [stderr] Compiling libm v0.2.15 [INFO] [stderr] Checking rayon v1.10.0 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling rand_core v0.6.4 [INFO] [stderr] Compiling siphasher v1.0.1 [INFO] [stderr] Compiling regex-syntax v0.8.5 [INFO] [stderr] Compiling rand v0.8.5 [INFO] [stderr] Compiling phf_shared v0.11.3 [INFO] [stderr] Checking getrandom v0.2.16 [INFO] [stderr] Compiling ahash v0.8.12 [INFO] [stderr] Compiling phf_generator v0.11.3 [INFO] [stderr] Checking getrandom v0.3.3 [INFO] [stderr] Compiling lock_api v0.4.13 [INFO] [stderr] Checking itoa v1.0.15 [INFO] [stderr] Compiling thiserror v2.0.12 [INFO] [stderr] Checking array-init-cursor v0.2.1 [INFO] [stderr] Compiling parking_lot_core v0.9.11 [INFO] [stderr] Checking planus v0.3.1 [INFO] [stderr] Checking regex-automata v0.4.9 [INFO] [stderr] Compiling psm v0.1.26 [INFO] [stderr] Compiling stacker v0.1.21 [INFO] [stderr] Checking ppv-lite86 v0.2.21 [INFO] [stderr] Compiling phf_codegen v0.11.3 [INFO] [stderr] Checking rand_chacha v0.3.1 [INFO] [stderr] Checking castaway v0.2.3 [INFO] [stderr] Compiling polars-utils v0.46.0 [INFO] [stderr] Checking simdutf8 v0.1.5 [INFO] [stderr] Checking iana-time-zone v0.1.63 [INFO] [stderr] Checking ryu v1.0.20 [INFO] [stderr] Checking chrono v0.4.41 [INFO] [stderr] Checking parking_lot v0.12.4 [INFO] [stderr] Checking raw-cpuid v11.5.0 [INFO] [stderr] Checking memmap2 v0.9.5 [INFO] [stderr] Compiling polars-schema v0.46.0 [INFO] [stderr] Checking phf v0.11.3 [INFO] [stderr] Compiling polars-arrow v0.46.0 [INFO] [stderr] Checking zlib-rs v0.5.1 [INFO] [stderr] Checking miniz_oxide v0.8.8 [INFO] [stderr] Compiling polars-compute v0.46.0 [INFO] [stderr] Checking ethnum v1.5.2 [INFO] [stderr] Checking dyn-clone v1.0.19 [INFO] [stderr] Compiling rustix v0.38.44 [INFO] [stderr] Checking debug_unsafe v0.1.3 [INFO] [stderr] Checking streaming-iterator v0.1.9 [INFO] [stderr] Checking strength_reduce v0.2.4 [INFO] [stderr] Compiling regex v1.11.1 [INFO] [stderr] Checking atoi_simd v0.16.1 [INFO] [stderr] Checking lexical-util v1.0.6 [INFO] [stderr] Checking crossbeam-channel v0.5.15 [INFO] [stderr] Checking libz-rs-sys v0.5.1 [INFO] [stderr] Compiling parse-zoneinfo v0.3.1 [INFO] [stderr] Checking flate2 v1.1.2 [INFO] [stderr] Checking bstr v1.12.0 [INFO] [stderr] Checking linux-raw-sys v0.4.15 [INFO] [stderr] Checking fast-float2 v0.2.3 [INFO] [stderr] Compiling polars-core v0.46.0 [INFO] [stderr] Checking unicode-segmentation v1.12.0 [INFO] [stderr] Compiling target-lexicon v0.12.16 [INFO] [stderr] Compiling chrono-tz-build v0.4.1 [INFO] [stderr] Checking unicode-width v0.2.0 [INFO] [stderr] Checking lexical-parse-integer v1.0.5 [INFO] [stderr] Checking lexical-write-integer v1.0.5 [INFO] [stderr] Checking rand_distr v0.4.3 [INFO] [stderr] Compiling polars-ops v0.46.0 [INFO] [stderr] Compiling typenum v1.18.0 [INFO] [stderr] Checking xxhash-rust v0.8.15 [INFO] [stderr] Checking bit-vec v0.8.0 [INFO] [stderr] Checking lexical-write-float v1.0.5 [INFO] [stderr] Compiling chrono-tz v0.10.3 [INFO] [stderr] Checking lexical-parse-float v1.0.5 [INFO] [stderr] Checking argminmax v0.6.3 [INFO] [stderr] Checking now v0.1.3 [INFO] [stderr] Checking crossterm v0.28.1 [INFO] [stderr] Checking noodles-core v0.17.0 [INFO] [stderr] Compiling serde_derive v1.0.219 [INFO] [stderr] Compiling thiserror-impl v2.0.12 [INFO] [stderr] Compiling bytemuck_derive v1.9.3 [INFO] [stderr] Compiling strum_macros v0.26.4 [INFO] [stderr] Checking comfy-table v7.1.4 [INFO] [stderr] Compiling pyo3-build-config v0.23.5 [INFO] [stderr] Checking lexical-core v1.0.5 [INFO] [stderr] Checking generic-array v0.14.7 [INFO] [stderr] Compiling recursive-proc-macro-impl v0.1.1 [INFO] [stderr] Compiling polars-plan v0.46.0 [INFO] [stderr] Checking home v0.5.11 [INFO] [stderr] Checking glob v0.3.2 [INFO] [stderr] Checking recursive v0.1.1 [INFO] [stderr] Compiling bzip2-sys v0.1.13+1.0.8 [INFO] [stderr] Compiling lzma-sys v0.1.20 [INFO] [stderr] Checking block-buffer v0.10.4 [INFO] [stderr] Checking crypto-common v0.1.6 [INFO] [stderr] Checking bytemuck v1.23.0 [INFO] [stderr] Checking digest v0.10.7 [INFO] [stderr] Compiling polars-lazy v0.46.0 [INFO] [stderr] Checking fallible-streaming-iterator v0.1.9 [INFO] [stderr] Checking md-5 v0.10.6 [INFO] [stderr] Checking streaming-decompression v0.1.2 [INFO] [stderr] Checking anstyle-parse v0.2.7 [INFO] [stderr] Checking xz2 v0.1.7 [INFO] [stderr] Compiling polars v0.46.0 [INFO] [stderr] Checking colorchoice v1.0.4 [INFO] [stderr] Checking anstyle-query v1.1.3 [INFO] [stderr] Checking anstyle v1.0.11 [INFO] [stderr] Checking polars-parquet-format v0.1.0 [INFO] [stderr] Checking toml_write v0.1.2 [INFO] [stderr] Checking anstream v0.6.19 [INFO] [stderr] Checking bzip2 v0.5.2 [INFO] [stderr] Compiling eyre v0.6.12 [INFO] [stderr] Checking clap_lex v0.7.4 [INFO] [stderr] Checking winnow v0.7.10 [INFO] [stderr] Compiling clap_derive v4.5.32 [INFO] [stderr] Checking indenter v0.3.3 [INFO] [stderr] Checking clap_builder v4.5.39 [INFO] [stderr] Compiling pyo3-ffi v0.23.5 [INFO] [stderr] Compiling pyo3-macros-backend v0.23.5 [INFO] [stderr] Checking itertools v0.14.0 [INFO] [stderr] Checking suffix v1.3.0 [INFO] [stderr] Checking coitrees v0.4.0 [INFO] [stderr] Checking noodles-core v0.16.0 [INFO] [stderr] Compiling pyo3 v0.23.5 [INFO] [stderr] Compiling time-core v0.1.4 [INFO] [stderr] Checking deranged v0.4.0 [INFO] [stderr] Compiling time-macros v0.2.22 [INFO] [stderr] Compiling thiserror-impl v1.0.69 [INFO] [stderr] Compiling indoc v2.0.6 [INFO] [stderr] Checking num_threads v0.1.7 [INFO] [stderr] Checking clap v4.5.39 [INFO] [stderr] Checking unindent v0.2.4 [INFO] [stderr] Checking colored v2.2.0 [INFO] [stderr] Checking time v0.3.41 [INFO] [stderr] Checking thiserror v1.0.69 [INFO] [stderr] Compiling pyo3-macros v0.23.5 [INFO] [stderr] Checking hashbrown v0.15.4 [INFO] [stderr] Checking bytes v1.10.1 [INFO] [stderr] Checking polars-arrow-format v0.1.0 [INFO] [stderr] Checking compact_str v0.8.1 [INFO] [stderr] Checking hashbrown v0.14.5 [INFO] [stderr] Checking serde_spanned v0.6.9 [INFO] [stderr] Checking toml_datetime v0.6.11 [INFO] [stderr] Checking log v0.4.27 [INFO] [stderr] Checking simple_logger v5.0.0 [INFO] [stderr] Checking noodles-bgzf v0.38.0 [INFO] [stderr] Checking noodles-bgzf v0.36.0 [INFO] [stderr] Checking noodles-fasta v0.51.0 [INFO] [stderr] Checking indexmap v2.9.0 [INFO] [stderr] Checking noodles-csi v0.46.0 [INFO] [stderr] Checking toml_edit v0.22.27 [INFO] [stderr] Checking noodles-csi v0.44.0 [INFO] [stderr] Checking noodles-sam v0.72.0 [INFO] [stderr] Checking noodles-sam v0.74.0 [INFO] [stderr] Checking polars-error v0.46.0 [INFO] [stderr] Checking toml v0.8.23 [INFO] [stderr] Checking noodles-bam v0.78.0 [INFO] [stderr] Checking noodles-bam v0.76.0 [INFO] [stderr] Checking noodles-cram v0.81.0 [INFO] [stderr] Checking noodles v0.91.0 [INFO] [stderr] Checking noodles v0.96.0 [INFO] [stderr] Checking rs-moddotplot v0.1.0 (https://github.com/logsdon-lab/rs-moddotplot.git?rev=e6439eaf7eeeba8702c12e0e4347c2127974d5f6#e6439eaf) [INFO] [stderr] Checking polars-row v0.46.0 [INFO] [stderr] Checking polars-parquet v0.46.0 [INFO] [stderr] Checking polars-time v0.46.0 [INFO] [stderr] Checking polars-io v0.46.0 [INFO] [stderr] Checking polars-expr v0.46.0 [INFO] [stderr] Checking polars-mem-engine v0.46.0 [INFO] [stderr] Checking rs-nucflag v0.1.0 (/opt/rustwide/workdir/core) [INFO] [stderr] Checking pyo3-polars v0.20.0 [INFO] [stderr] Checking py-nucflag v0.1.3 (/opt/rustwide/workdir/py) [INFO] [stderr] Checking example_cli v0.1.0 (/opt/rustwide/workdir/examples) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 2m 26s [INFO] running `Command { std: "docker" "inspect" "2cfa5b76b7593fc0c46f3a093de5ae76cacbcb280a93143381ddcefda5cdceea", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "2cfa5b76b7593fc0c46f3a093de5ae76cacbcb280a93143381ddcefda5cdceea", kill_on_drop: false }` [INFO] [stdout] 2cfa5b76b7593fc0c46f3a093de5ae76cacbcb280a93143381ddcefda5cdceea