[INFO] cloning repository https://github.com/AndreaGuarracino/lib_bpaf
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/AndreaGuarracino/lib_bpaf" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FAndreaGuarracino%2Flib_bpaf", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FAndreaGuarracino%2Flib_bpaf'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 1a8fbcc707d4b4203611b56a81f7fa25b4e069d1
[INFO] checking AndreaGuarracino/lib_bpaf against master#9050733395f7c10560d49f549e022f411fa28cea for pr-146972
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FAndreaGuarracino%2Flib_bpaf" "/workspace/builds/worker-6-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-6-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/AndreaGuarracino/lib_bpaf
[INFO] finished tweaking git repo https://github.com/AndreaGuarracino/lib_bpaf
[INFO] tweaked toml for git repo https://github.com/AndreaGuarracino/lib_bpaf written to /workspace/builds/worker-6-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/AndreaGuarracino/lib_bpaf on toolchain 9050733395f7c10560d49f549e022f411fa28cea
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+9050733395f7c10560d49f549e022f411fa28cea" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/AndreaGuarracino/lib_bpaf already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+9050733395f7c10560d49f549e022f411fa28cea" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]     Updating git repository `https://github.com/AndreaGuarracino/lib_tracepoints`
[INFO] [stderr]     Updating git repository `https://github.com/AndreaGuarracino/lib_wfa2`
[INFO] [stderr]     Updating git submodule `https://github.com/smarco/WFA2-lib`
[INFO] [stderr]      Locking 7 packages to latest compatible versions
[INFO] [stderr]       Adding bytes v1.11.0
[INFO] [stderr]       Adding crossbeam-channel v0.5.15
[INFO] [stderr]       Adding crossbeam-utils v0.8.21
[INFO] [stderr]       Adding libz-rs-sys v0.5.3
[INFO] [stderr]       Adding noodles v0.100.0 (available: v0.102.0)
[INFO] [stderr]       Adding noodles-bgzf v0.42.0
[INFO] [stderr]       Adding zlib-rs v0.5.3
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded noodles v0.100.0
[INFO] [stderr]   Downloaded env_filter v0.1.4
[INFO] [stderr]   Downloaded cc v1.2.45
[INFO] [stderr]   Downloaded noodles-bgzf v0.42.0
[INFO] [stderr]   Downloaded zlib-rs v0.5.3
[INFO] [stderr]   Downloaded libz-rs-sys v0.5.3
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:94a0c148923f5b2b52a63ef0eeb1882ad339ab61bce784c8077cbe41c61feb6c" "/opt/rustwide/cargo-home/bin/cargo" "+9050733395f7c10560d49f549e022f411fa28cea" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 0581892a9e4a66f509b5944519f974b305954a7b5201ed77b57d3409bfaa0993
[INFO] running `Command { std: "docker" "start" "-a" "0581892a9e4a66f509b5944519f974b305954a7b5201ed77b57d3409bfaa0993", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "0581892a9e4a66f509b5944519f974b305954a7b5201ed77b57d3409bfaa0993", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "0581892a9e4a66f509b5944519f974b305954a7b5201ed77b57d3409bfaa0993", kill_on_drop: false }`
[INFO] [stdout] 0581892a9e4a66f509b5944519f974b305954a7b5201ed77b57d3409bfaa0993
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:94a0c148923f5b2b52a63ef0eeb1882ad339ab61bce784c8077cbe41c61feb6c" "/opt/rustwide/cargo-home/bin/cargo" "+9050733395f7c10560d49f549e022f411fa28cea" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 715068b45d6fb1e4de76d690ea01a272f6245278949139ab58bb3b37a9b1d0be
[INFO] running `Command { std: "docker" "start" "-a" "715068b45d6fb1e4de76d690ea01a272f6245278949139ab58bb3b37a9b1d0be", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.177
[INFO] [stderr]    Compiling find-msvc-tools v0.1.4
[INFO] [stderr]     Checking simd-adler32 v0.3.7
[INFO] [stderr]     Checking zlib-rs v0.5.3
[INFO] [stderr]     Checking regex-syntax v0.8.8
[INFO] [stderr]    Compiling lib_wfa2 v0.1.0 (https://github.com/AndreaGuarracino/lib_wfa2#ecfb9d8d)
[INFO] [stderr]     Checking log v0.4.28
[INFO] [stderr]     Checking anstyle v1.0.13
[INFO] [stderr]     Checking aho-corasick v1.1.4
[INFO] [stderr]     Checking is_terminal_polyfill v1.70.2
[INFO] [stderr]     Checking jiff v0.2.16
[INFO] [stderr]     Checking crc32fast v1.5.0
[INFO] [stderr]     Checking bytes v1.11.0
[INFO] [stderr]     Checking anstream v0.6.21
[INFO] [stderr] error: failed to run custom build command for `lib_wfa2 v0.1.0 (https://github.com/AndreaGuarracino/lib_wfa2#ecfb9d8d)`
[INFO] [stderr] note: To improve backtraces for build dependencies, set the CARGO_PROFILE_DEV_BUILD_OVERRIDE_DEBUG=true environment variable to enable debug information generation.
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/target/debug/build/lib_wfa2-3b99c5cd7cf8bf66/build-script-build` (exit status: 101)
[INFO] [stderr]   --- stderr
[INFO] [stderr] 
[INFO] [stderr]   thread 'main' (121) panicked at /opt/rustwide/cargo-home/git/checkouts/lib_wfa2-9e554f8770e7b94e/ecfb9d8/build.rs:177:9:
[INFO] [stderr]   Failed to build WFA2-lib: Make failed:
[INFO] [stderr]   STDOUT:
[INFO] [stderr]   rm -rf bin build lib 2> /dev/null
[INFO] [stderr]   make --directory=tools/align_benchmark clean
[INFO] [stderr]   make[1]: Entering directory '/opt/rustwide/cargo-home/git/checkouts/lib_wfa2-9e554f8770e7b94e/ecfb9d8/WFA2-lib/tools/align_benchmark'
[INFO] [stderr]   rm -rf ./build
[INFO] [stderr]   make[1]: Leaving directory '/opt/rustwide/cargo-home/git/checkouts/lib_wfa2-9e554f8770e7b94e/ecfb9d8/WFA2-lib/tools/align_benchmark'
[INFO] [stderr]   make --directory=examples clean
[INFO] [stderr]   make[1]: Entering directory '/opt/rustwide/cargo-home/git/checkouts/lib_wfa2-9e554f8770e7b94e/ecfb9d8/WFA2-lib/examples'
[INFO] [stderr]   rm -rf bin
[INFO] [stderr]   make[1]: Leaving directory '/opt/rustwide/cargo-home/git/checkouts/lib_wfa2-9e554f8770e7b94e/ecfb9d8/WFA2-lib/examples'
[INFO] [stderr]   rm -rf tests/*.alg tests/*.log* 2> /dev/null
[INFO] [stderr] 
[INFO] [stderr]   STDERR:
[INFO] [stderr]   mkdir: cannot create directory 'bin': Read-only file system
[INFO] [stderr]   mkdir: cannot create directory 'build': Read-only file system
[INFO] [stderr]   mkdir: cannot create directory 'build': Read-only file system
[INFO] [stderr]   mkdir: cannot create directory 'lib': Read-only file system
[INFO] [stderr]   make: *** [Makefile:70: setup] Error 1
[INFO] [stderr] 
[INFO] [stderr]   stack backtrace:
[INFO] [stderr]      0:     0x5a71eee5d032 - std[5b779b883262a33]::backtrace_rs::backtrace::libunwind::trace
[INFO] [stderr]                                  at /rustc/9050733395f7c10560d49f549e022f411fa28cea/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9
[INFO] [stderr]      1:     0x5a71eee5d032 - std[5b779b883262a33]::backtrace_rs::backtrace::trace_unsynchronized::<std[5b779b883262a33]::sys::backtrace::_print_fmt::{closure#1}>
[INFO] [stderr]                                  at /rustc/9050733395f7c10560d49f549e022f411fa28cea/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14
[INFO] [stderr]      2:     0x5a71eee5d032 - std[5b779b883262a33]::sys::backtrace::_print_fmt
[INFO] [stderr]                                  at /rustc/9050733395f7c10560d49f549e022f411fa28cea/library/std/src/sys/backtrace.rs:68:9
[INFO] [stderr]      3:     0x5a71eee5d032 - <<std[5b779b883262a33]::sys::backtrace::BacktraceLock>::print::DisplayBacktrace as core[eefff645653f21e9]::fmt::Display>::fmt
[INFO] [stderr]                                  at /rustc/9050733395f7c10560d49f549e022f411fa28cea/library/std/src/sys/backtrace.rs:38:26
[INFO] [stderr]      4:     0x5a71eee6ef37 - <core[eefff645653f21e9]::fmt::rt::Argument>::fmt
[INFO] [stderr]                                  at /rustc/9050733395f7c10560d49f549e022f411fa28cea/library/core/src/fmt/rt.rs:152:76
[INFO] [stderr]      5:     0x5a71eee6ef37 - core[eefff645653f21e9]::fmt::write
[INFO] [stderr]      6:     0x5a71eee61906 - std[5b779b883262a33]::io::default_write_fmt::<std[5b779b883262a33]::sys::stdio::unix::Stderr>
[INFO] [stderr]                                  at /rustc/9050733395f7c10560d49f549e022f411fa28cea/library/std/src/io/mod.rs:639:11
[INFO] [stderr]      7:     0x5a71eee61906 - <std[5b779b883262a33]::sys::stdio::unix::Stderr as std[5b779b883262a33]::io::Write>::write_fmt
[INFO] [stderr]                                  at /rustc/9050733395f7c10560d49f549e022f411fa28cea/library/std/src/io/mod.rs:1994:13
[INFO] [stderr]      8:     0x5a71eee4103a - <std[5b779b883262a33]::sys::backtrace::BacktraceLock>::print
[INFO] [stderr]                                  at /rustc/9050733395f7c10560d49f549e022f411fa28cea/library/std/src/sys/backtrace.rs:41:9
[INFO] [stderr]      9:     0x5a71eee4103a - std[5b779b883262a33]::panicking::default_hook::{closure#0}
[INFO] [stderr]                                  at /rustc/9050733395f7c10560d49f549e022f411fa28cea/library/std/src/panicking.rs:292:27
[INFO] [stderr]     10:     0x5a71eee58cc1 - std[5b779b883262a33]::panicking::default_hook
[INFO] [stderr]                                  at /rustc/9050733395f7c10560d49f549e022f411fa28cea/library/std/src/panicking.rs:319:9
[INFO] [stderr]     11:     0x5a71eee58e7b - std[5b779b883262a33]::panicking::panic_with_hook
[INFO] [stderr]                                  at /rustc/9050733395f7c10560d49f549e022f411fa28cea/library/std/src/panicking.rs:825:13
[INFO] [stderr]     12:     0x5a71eee410f8 - std[5b779b883262a33]::panicking::panic_handler::{closure#0}
[INFO] [stderr]                                  at /rustc/9050733395f7c10560d49f549e022f411fa28cea/library/std/src/panicking.rs:698:13
[INFO] [stderr]     13:     0x5a71eee38a09 - std[5b779b883262a33]::sys::backtrace::__rust_end_short_backtrace::<std[5b779b883262a33]::panicking::panic_handler::{closure#0}, !>
[INFO] [stderr]                                  at /rustc/9050733395f7c10560d49f549e022f411fa28cea/library/std/src/sys/backtrace.rs:176:18
[INFO] [stderr]     14:     0x5a71eee41afd - __rustc[c9b961c1efc8bac7]::rust_begin_unwind
[INFO] [stderr]                                  at /rustc/9050733395f7c10560d49f549e022f411fa28cea/library/std/src/panicking.rs:689:5
[INFO] [stderr]     15:     0x5a71eee6f57c - core[eefff645653f21e9]::panicking::panic_fmt
[INFO] [stderr]                                  at /rustc/9050733395f7c10560d49f549e022f411fa28cea/library/core/src/panicking.rs:80:14
[INFO] [stderr]     16:     0x5a71eee26369 - build_script_build[53458b9e5b47c38b]::main
[INFO] [stderr]     17:     0x5a71eee28dc3 - <fn() as core[eefff645653f21e9]::ops::function::FnOnce<()>>::call_once
[INFO] [stderr]     18:     0x5a71eee1f4a6 - std[5b779b883262a33]::sys::backtrace::__rust_begin_short_backtrace::<fn(), ()>
[INFO] [stderr]     19:     0x5a71eee25889 - std[5b779b883262a33]::rt::lang_start::<()>::{closure#0}
[INFO] [stderr]     20:     0x5a71eee57e3a - <&dyn core[eefff645653f21e9]::ops::function::Fn<(), Output = i32> + core[eefff645653f21e9]::panic::unwind_safe::RefUnwindSafe + core[eefff645653f21e9]::marker::Sync as core[eefff645653f21e9]::ops::function::FnOnce<()>>::call_once
[INFO] [stderr]                                  at /rustc/9050733395f7c10560d49f549e022f411fa28cea/library/core/src/ops/function.rs:287:21
[INFO] [stderr]     21:     0x5a71eee57e3a - std[5b779b883262a33]::panicking::catch_unwind::do_call::<&dyn core[eefff645653f21e9]::ops::function::Fn<(), Output = i32> + core[eefff645653f21e9]::panic::unwind_safe::RefUnwindSafe + core[eefff645653f21e9]::marker::Sync, i32>
[INFO] [stderr]                                  at /rustc/9050733395f7c10560d49f549e022f411fa28cea/library/std/src/panicking.rs:581:40
[INFO] [stderr]     22:     0x5a71eee57e3a - std[5b779b883262a33]::panicking::catch_unwind::<i32, &dyn core[eefff645653f21e9]::ops::function::Fn<(), Output = i32> + core[eefff645653f21e9]::panic::unwind_safe::RefUnwindSafe + core[eefff645653f21e9]::marker::Sync>
[INFO] [stderr]                                  at /rustc/9050733395f7c10560d49f549e022f411fa28cea/library/std/src/panicking.rs:544:19
[INFO] [stderr]     23:     0x5a71eee57e3a - std[5b779b883262a33]::panic::catch_unwind::<&dyn core[eefff645653f21e9]::ops::function::Fn<(), Output = i32> + core[eefff645653f21e9]::panic::unwind_safe::RefUnwindSafe + core[eefff645653f21e9]::marker::Sync, i32>
[INFO] [stderr]                                  at /rustc/9050733395f7c10560d49f549e022f411fa28cea/library/std/src/panic.rs:359:14
[INFO] [stderr]     24:     0x5a71eee57e3a - std[5b779b883262a33]::rt::lang_start_internal::{closure#0}
[INFO] [stderr]                                  at /rustc/9050733395f7c10560d49f549e022f411fa28cea/library/std/src/rt.rs:175:24
[INFO] [stderr]     25:     0x5a71eee57e3a - std[5b779b883262a33]::panicking::catch_unwind::do_call::<std[5b779b883262a33]::rt::lang_start_internal::{closure#0}, isize>
[INFO] [stderr]                                  at /rustc/9050733395f7c10560d49f549e022f411fa28cea/library/std/src/panicking.rs:581:40
[INFO] [stderr]     26:     0x5a71eee57e3a - std[5b779b883262a33]::panicking::catch_unwind::<isize, std[5b779b883262a33]::rt::lang_start_internal::{closure#0}>
[INFO] [stderr]                                  at /rustc/9050733395f7c10560d49f549e022f411fa28cea/library/std/src/panicking.rs:544:19
[INFO] [stderr]     27:     0x5a71eee57e3a - std[5b779b883262a33]::panic::catch_unwind::<std[5b779b883262a33]::rt::lang_start_internal::{closure#0}, isize>
[INFO] [stderr]                                  at /rustc/9050733395f7c10560d49f549e022f411fa28cea/library/std/src/panic.rs:359:14
[INFO] [stderr]     28:     0x5a71eee57e3a - std[5b779b883262a33]::rt::lang_start_internal
[INFO] [stderr]                                  at /rustc/9050733395f7c10560d49f549e022f411fa28cea/library/std/src/rt.rs:171:5
[INFO] [stderr]     29:     0x5a71eee24bd1 - std[5b779b883262a33]::rt::lang_start::<()>
[INFO] [stderr]     30:     0x5a71eee28e95 - main
[INFO] [stderr]     31:     0x7b9e1eb9e1ca - <unknown>
[INFO] [stderr]     32:     0x7b9e1eb9e28b - __libc_start_main
[INFO] [stderr]     33:     0x5a71eee1e165 - _start
[INFO] [stderr]     34:                0x0 - <unknown>
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] running `Command { std: "docker" "inspect" "715068b45d6fb1e4de76d690ea01a272f6245278949139ab58bb3b37a9b1d0be", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "715068b45d6fb1e4de76d690ea01a272f6245278949139ab58bb3b37a9b1d0be", kill_on_drop: false }`
[INFO] [stdout] 715068b45d6fb1e4de76d690ea01a272f6245278949139ab58bb3b37a9b1d0be
