[INFO] cloning repository https://github.com/vliviu/HME_toolbox_RUST [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/vliviu/HME_toolbox_RUST" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fvliviu%2FHME_toolbox_RUST", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fvliviu%2FHME_toolbox_RUST'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 28bd142e0563289e73de2ee0a5a67bce2a061b17 [INFO] checking vliviu/HME_toolbox_RUST against try#969026c535f4240ff7866ef11207dfda18a26af6 for pr-146504 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fvliviu%2FHME_toolbox_RUST" "/workspace/builds/worker-6-tc2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-6-tc2/source'... [INFO] [stderr] done. [INFO] started tweaking git repo https://github.com/vliviu/HME_toolbox_RUST [INFO] finished tweaking git repo https://github.com/vliviu/HME_toolbox_RUST [INFO] tweaked toml for git repo https://github.com/vliviu/HME_toolbox_RUST written to /workspace/builds/worker-6-tc2/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/vliviu/HME_toolbox_RUST on toolchain 969026c535f4240ff7866ef11207dfda18a26af6 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+969026c535f4240ff7866ef11207dfda18a26af6" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/vliviu/HME_toolbox_RUST already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+969026c535f4240ff7866ef11207dfda18a26af6" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded wasm-bindgen v0.2.99 [INFO] [stderr] Downloaded js-sys v0.3.76 [INFO] [stderr] Downloaded plotters-bitmap v0.3.7 [INFO] [stderr] Downloaded wasm-bindgen-backend v0.2.99 [INFO] [stderr] Downloaded wasm-bindgen-macro v0.2.99 [INFO] [stderr] Downloaded wasm-bindgen-macro-support v0.2.99 [INFO] [stderr] Downloaded csv-core v0.1.11 [INFO] [stderr] Downloaded strum v0.21.0 [INFO] [stderr] Downloaded yeslogic-fontconfig-sys v6.0.0 [INFO] [stderr] Downloaded enum-map-derive v0.6.0 [INFO] [stderr] Downloaded itertools-num v0.1.3 [INFO] [stderr] Downloaded newtype_derive v0.1.6 [INFO] [stderr] Downloaded fasta v0.1.3 [INFO] [stderr] Downloaded bytecount v0.6.8 [INFO] [stderr] Downloaded enum-map v1.1.1 [INFO] [stderr] Downloaded getset v0.1.3 [INFO] [stderr] Downloaded ordered-float v1.1.1 [INFO] [stderr] Downloaded bio-types v1.0.4 [INFO] [stderr] Downloaded derive-new v0.6.0 [INFO] [stderr] Downloaded half v1.8.3 [INFO] [stderr] Downloaded simba v0.5.1 [INFO] [stderr] Downloaded serde v1.0.216 [INFO] [stderr] Downloaded cc v1.2.6 [INFO] [stderr] Downloaded wide v0.7.30 [INFO] [stderr] Downloaded criterion v0.3.6 [INFO] [stderr] Downloaded statrs v0.15.0 [INFO] [stderr] Downloaded serde_json v1.0.134 [INFO] [stderr] Downloaded bio v0.38.0 [INFO] [stderr] Downloaded font-kit v0.14.2 [INFO] [stderr] Downloaded miniz_oxide v0.8.2 [INFO] [stderr] Downloaded syn v2.0.92 [INFO] [stderr] Downloaded serde_derive v1.0.216 [INFO] [stderr] Downloaded triple_accel v0.4.0 [INFO] [stderr] Downloaded serde_cbor v0.11.2 [INFO] [stderr] Downloaded pathfinder_simd v0.5.4 [INFO] [stderr] Downloaded semver v1.0.24 [INFO] [stderr] Downloaded nalgebra v0.27.1 [INFO] [stderr] Downloaded core-text v20.1.0 [INFO] [stderr] Downloaded float-ord v0.3.2 [INFO] [stderr] Downloaded wasm-bindgen-shared v0.2.99 [INFO] [stderr] Downloaded strum_macros v0.21.1 [INFO] [stderr] Downloaded criterion-plot v0.4.5 [INFO] [stderr] Downloaded dwrote v0.11.2 [INFO] [stderr] Downloaded nalgebra-macros v0.1.0 [INFO] [stderr] Downloaded web-sys v0.3.76 [INFO] [stderr] Downloaded gif v0.12.0 [INFO] [stderr] Downloaded csv v1.3.1 [INFO] [stderr] Downloaded freetype-sys v0.20.1 [INFO] [stderr] Downloaded image v0.24.9 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+969026c535f4240ff7866ef11207dfda18a26af6" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] bc5468aaf85244344ea0e670ea693e738d41b8d9d90b9e53173ba4fe3608087c [INFO] running `Command { std: "docker" "start" "-a" "bc5468aaf85244344ea0e670ea693e738d41b8d9d90b9e53173ba4fe3608087c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "bc5468aaf85244344ea0e670ea693e738d41b8d9d90b9e53173ba4fe3608087c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "bc5468aaf85244344ea0e670ea693e738d41b8d9d90b9e53173ba4fe3608087c", kill_on_drop: false }` [INFO] [stdout] bc5468aaf85244344ea0e670ea693e738d41b8d9d90b9e53173ba4fe3608087c [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+969026c535f4240ff7866ef11207dfda18a26af6" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] cea5de9845aae3cbac86c84eee0363bd9ff503065691c8c8717055659375c9b6 [INFO] running `Command { std: "docker" "start" "-a" "cea5de9845aae3cbac86c84eee0363bd9ff503065691c8c8717055659375c9b6", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.92 [INFO] [stderr] Compiling libm v0.2.11 [INFO] [stderr] Checking byteorder v1.5.0 [INFO] [stderr] Compiling serde v1.0.216 [INFO] [stderr] Checking memchr v2.7.4 [INFO] [stderr] Compiling semver v1.0.24 [INFO] [stderr] Compiling pkg-config v0.3.31 [INFO] [stderr] Compiling syn v1.0.109 [INFO] [stderr] Checking simd-adler32 v0.3.7 [INFO] [stderr] Checking bytemuck v1.21.0 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling cc v1.2.6 [INFO] [stderr] Compiling matrixmultiply v0.3.9 [INFO] [stderr] Compiling crossbeam-utils v0.8.21 [INFO] [stderr] Checking rawpointer v0.2.1 [INFO] [stderr] Checking libloading v0.8.6 [INFO] [stderr] Checking miniz_oxide v0.8.2 [INFO] [stderr] Checking fdeflate v0.3.7 [INFO] [stderr] Checking either v1.13.0 [INFO] [stderr] Checking color_quant v1.1.0 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling serde_json v1.0.134 [INFO] [stderr] Checking regex-syntax v0.8.5 [INFO] [stderr] Checking option-ext v0.2.0 [INFO] [stderr] Checking dlib v0.5.2 [INFO] [stderr] Checking plotters-backend v0.3.7 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Checking dirs-sys v0.4.1 [INFO] [stderr] Checking aho-corasick v1.1.3 [INFO] [stderr] Checking weezl v0.1.8 [INFO] [stderr] Checking flate2 v1.0.35 [INFO] [stderr] Compiling thiserror v1.0.69 [INFO] [stderr] Checking same-file v1.0.6 [INFO] [stderr] Checking jpeg-decoder v0.3.1 [INFO] [stderr] Compiling font-kit v0.14.2 [INFO] [stderr] Compiling rustc_version v0.4.1 [INFO] [stderr] Checking walkdir v2.5.0 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Checking dirs v5.0.1 [INFO] [stderr] Compiling yeslogic-fontconfig-sys v6.0.0 [INFO] [stderr] Checking csv-core v0.1.11 [INFO] [stderr] Compiling quote v1.0.38 [INFO] [stderr] Checking itertools v0.10.5 [INFO] [stderr] Checking gif v0.12.0 [INFO] [stderr] Checking safe_arch v0.7.4 [INFO] [stderr] Checking crossbeam-epoch v0.9.18 [INFO] [stderr] Checking float-ord v0.3.2 [INFO] [stderr] Compiling syn v2.0.92 [INFO] [stderr] Checking unicode-width v0.1.14 [INFO] [stderr] Compiling unicode-segmentation v1.12.0 [INFO] [stderr] Checking png v0.17.16 [INFO] [stderr] Compiling pathfinder_simd v0.5.4 [INFO] [stderr] Checking plotters-svg v0.3.7 [INFO] [stderr] Compiling proc-macro-error-attr2 v2.0.0 [INFO] [stderr] Checking crossbeam-deque v0.8.6 [INFO] [stderr] Checking ttf-parser v0.20.0 [INFO] [stderr] Compiling bio v0.38.0 [INFO] [stderr] Checking wide v0.7.30 [INFO] [stderr] Checking num-complex v0.4.6 [INFO] [stderr] Checking approx v0.5.1 [INFO] [stderr] Checking num-integer v0.1.46 [INFO] [stderr] Checking textwrap v0.11.0 [INFO] [stderr] Checking chrono v0.4.39 [INFO] [stderr] Checking half v1.8.3 [INFO] [stderr] Checking rayon-core v1.12.1 [INFO] [stderr] Checking num-rational v0.4.2 [INFO] [stderr] Checking cast v0.3.0 [INFO] [stderr] Compiling heck v0.3.3 [INFO] [stderr] Checking fixedbitset v0.2.0 [INFO] [stderr] Checking bit-vec v0.6.3 [INFO] [stderr] Checking bit-set v0.5.3 [INFO] [stderr] Checking simba v0.5.1 [INFO] [stderr] Checking ndarray v0.15.6 [INFO] [stderr] Compiling freetype-sys v0.20.1 [INFO] [stderr] Checking regex-automata v0.4.9 [INFO] [stderr] Checking petgraph v0.5.1 [INFO] [stderr] Checking clap v2.34.0 [INFO] [stderr] Checking image v0.24.9 [INFO] [stderr] Checking pathfinder_geometry v0.5.1 [INFO] [stderr] Checking rayon v1.10.0 [INFO] [stderr] Checking ordered-float v1.1.1 [INFO] [stderr] Checking itertools-num v0.1.3 [INFO] [stderr] Checking fxhash v0.2.1 [INFO] [stderr] Checking atty v0.2.14 [INFO] [stderr] Checking oorandom v11.1.4 [INFO] [stderr] Checking custom_derive v0.1.7 [INFO] [stderr] Checking strum v0.21.0 [INFO] [stderr] Checking triple_accel v0.4.0 [INFO] [stderr] Checking bytecount v0.6.8 [INFO] [stderr] Checking criterion-plot v0.4.5 [INFO] [stderr] Checking simba v0.9.0 [INFO] [stderr] Checking regex v1.11.1 [INFO] [stderr] Checking plotters-bitmap v0.3.7 [INFO] [stderr] Checking plotters v0.3.7 [INFO] [stderr] Compiling proc-macro-error2 v2.0.1 [INFO] [stderr] Compiling nalgebra-macros v0.1.0 [INFO] [stderr] Compiling enum-map-derive v0.6.0 [INFO] [stderr] Compiling strum_macros v0.21.1 [INFO] [stderr] Compiling serde_derive v1.0.216 [INFO] [stderr] Compiling zerocopy-derive v0.7.35 [INFO] [stderr] Compiling thiserror-impl v1.0.69 [INFO] [stderr] Compiling derive-new v0.6.0 [INFO] [stderr] Compiling strum_macros v0.26.4 [INFO] [stderr] Compiling getset v0.1.3 [INFO] [stderr] Compiling nalgebra-macros v0.2.2 [INFO] [stderr] Checking enum-map v1.1.1 [INFO] [stderr] Checking zerocopy v0.7.35 [INFO] [stderr] Checking bio-types v1.0.4 [INFO] [stderr] Checking ppv-lite86 v0.2.20 [INFO] [stderr] Checking rand_chacha v0.3.1 [INFO] [stderr] Checking rand v0.8.5 [INFO] [stderr] Checking rand_distr v0.4.3 [INFO] [stderr] Checking nalgebra v0.27.1 [INFO] [stderr] Checking nalgebra v0.33.2 [INFO] [stderr] Checking csv v1.3.1 [INFO] [stderr] Checking vec_map v0.8.2 [INFO] [stderr] Checking bv v0.11.1 [INFO] [stderr] Checking multimap v0.8.3 [INFO] [stderr] Checking serde_cbor v0.11.2 [INFO] [stderr] Checking tinytemplate v1.2.1 [INFO] [stderr] Checking fasta v0.1.3 [INFO] [stderr] Checking criterion v0.3.6 [INFO] [stderr] Checking statrs v0.15.0 [INFO] [stderr] Checking hme_toolbox v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused import: `std::fs::File` [INFO] [stdout] --> tests/fasta_test.rs:2:5 [INFO] [stdout] | [INFO] [stdout] 2 | use std::fs::File; [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `BufReader` and `self` [INFO] [stdout] --> tests/fasta_test.rs:3:15 [INFO] [stdout] | [INFO] [stdout] 3 | use std::io::{self, BufReader}; // Ensure you have plotters dependency [INFO] [stdout] | ^^^^ ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `hme_toolbox::clustering::hme::HMECluster` [INFO] [stdout] --> tests/fasta_test.rs:6:5 [INFO] [stdout] | [INFO] [stdout] 6 | use hme_toolbox::clustering::hme::HMECluster; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `hme_toolbox::plotter::plot_clusters as imported_plot_clusters` [INFO] [stdout] --> tests/fasta_test.rs:10:5 [INFO] [stdout] | [INFO] [stdout] 10 | use hme_toolbox::plotter::plot_clusters as imported_plot_clusters; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 47.36s [INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: nalgebra v0.27.1 [INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 2` [INFO] running `Command { std: "docker" "inspect" "cea5de9845aae3cbac86c84eee0363bd9ff503065691c8c8717055659375c9b6", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "cea5de9845aae3cbac86c84eee0363bd9ff503065691c8c8717055659375c9b6", kill_on_drop: false }` [INFO] [stdout] cea5de9845aae3cbac86c84eee0363bd9ff503065691c8c8717055659375c9b6