[INFO] cloning repository https://github.com/ARU-life-sciences/extract_nhmmer_tblout
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/ARU-life-sciences/extract_nhmmer_tblout" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FARU-life-sciences%2Fextract_nhmmer_tblout", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FARU-life-sciences%2Fextract_nhmmer_tblout'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] b463b611c347c1f23d68f2061296df531711728f
[INFO] checking ARU-life-sciences/extract_nhmmer_tblout against master#c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38 for pr-146470
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FARU-life-sciences%2Fextract_nhmmer_tblout" "/workspace/builds/worker-5-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-5-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/ARU-life-sciences/extract_nhmmer_tblout
[INFO] finished tweaking git repo https://github.com/ARU-life-sciences/extract_nhmmer_tblout
[INFO] tweaked toml for git repo https://github.com/ARU-life-sciences/extract_nhmmer_tblout written to /workspace/builds/worker-5-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/ARU-life-sciences/extract_nhmmer_tblout on toolchain c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/ARU-life-sciences/extract_nhmmer_tblout already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded noodles-bgzf v0.29.0
[INFO] [stderr]   Downloaded anstyle-parse v0.2.4
[INFO] [stderr]   Downloaded anstyle-wincon v3.0.3
[INFO] [stderr]   Downloaded hmm_tblout v0.2.1
[INFO] [stderr]   Downloaded anstream v0.6.14
[INFO] [stderr]   Downloaded anyhow v1.0.82
[INFO] [stderr]   Downloaded is_terminal_polyfill v1.70.0
[INFO] [stderr]   Downloaded bstr v1.9.1
[INFO] [stderr]   Downloaded colorchoice v1.0.1
[INFO] [stderr]   Downloaded libc v0.2.154
[INFO] [stderr]   Downloaded anstyle v1.0.7
[INFO] [stderr]   Downloaded anstyle-query v1.0.3
[INFO] [stderr]   Downloaded noodles-core v0.15.0
[INFO] [stderr]   Downloaded noodles-fasta v0.37.0
[INFO] [stderr]   Downloaded serde_derive v1.0.201
[INFO] [stderr]   Downloaded serde v1.0.201
[INFO] [stderr]   Downloaded syn v2.0.61
[INFO] [stderr]   Downloaded proc-macro2 v1.0.82
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 6c352486e77d778eceef319f8a8c227d6bfc4e5b3acb374f542c6568663e95a5
[INFO] running `Command { std: "docker" "start" "-a" "6c352486e77d778eceef319f8a8c227d6bfc4e5b3acb374f542c6568663e95a5", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "6c352486e77d778eceef319f8a8c227d6bfc4e5b3acb374f542c6568663e95a5", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "6c352486e77d778eceef319f8a8c227d6bfc4e5b3acb374f542c6568663e95a5", kill_on_drop: false }`
[INFO] [stdout] 6c352486e77d778eceef319f8a8c227d6bfc4e5b3acb374f542c6568663e95a5
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4848fb76d95f26979359cc7e45710b1dbc8f3acb7aeedee7c460d7702230f228" "/opt/rustwide/cargo-home/bin/cargo" "+c90bcb9571b7aab0d8beaa2ce8a998ffaf079d38" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 53fe48b6e4c5993c1f5fc395391b0b33cc5ae9720b41e493250eefb90960e508
[INFO] running `Command { std: "docker" "start" "-a" "53fe48b6e4c5993c1f5fc395391b0b33cc5ae9720b41e493250eefb90960e508", kill_on_drop: false }`
[INFO] [stderr]    Compiling crossbeam-utils v0.8.19
[INFO] [stderr]    Compiling crc32fast v1.4.0
[INFO] [stderr]     Checking anstyle v1.0.7
[INFO] [stderr]     Checking memchr v2.7.2
[INFO] [stderr]    Compiling rustix v0.38.34
[INFO] [stderr]     Checking anstyle-query v1.0.3
[INFO] [stderr]     Checking is_terminal_polyfill v1.70.0
[INFO] [stderr]     Checking colorchoice v1.0.1
[INFO] [stderr]     Checking bytes v1.6.0
[INFO] [stderr]     Checking clap_lex v0.7.0
[INFO] [stderr]     Checking bitflags v2.5.0
[INFO] [stderr]    Compiling anyhow v1.0.82
[INFO] [stderr]     Checking miniz_oxide v0.8.9
[INFO] [stderr]     Checking anstyle-parse v0.2.4
[INFO] [stderr]     Checking linux-raw-sys v0.4.13
[INFO] [stderr]     Checking fastrand v2.1.0
[INFO] [stderr]     Checking hmm_tblout v0.2.1
[INFO] [stderr]     Checking anstream v0.6.14
[INFO] [stderr]     Checking clap_builder v4.5.2
[INFO] [stderr]     Checking bstr v1.9.1
[INFO] [stderr]     Checking flate2 v1.1.2
[INFO] [stderr]     Checking crossbeam-channel v0.5.12
[INFO] [stderr]     Checking noodles-core v0.15.0
[INFO] [stderr]     Checking noodles-bgzf v0.29.0
[INFO] [stderr]     Checking noodles-fasta v0.37.0
[INFO] [stderr]     Checking clap v4.5.4
[INFO] [stderr]     Checking tempfile v3.10.1
[INFO] [stderr]     Checking extract_nhmmer_tblout v0.1.31 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 1.59s
[INFO] running `Command { std: "docker" "inspect" "53fe48b6e4c5993c1f5fc395391b0b33cc5ae9720b41e493250eefb90960e508", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "53fe48b6e4c5993c1f5fc395391b0b33cc5ae9720b41e493250eefb90960e508", kill_on_drop: false }`
[INFO] [stdout] 53fe48b6e4c5993c1f5fc395391b0b33cc5ae9720b41e493250eefb90960e508
