[INFO] fetching crate snp-index 0.1.2...
[INFO] checking snp-index-0.1.2 against master#507271bc119683008ec719ecee48814e8ac86c65 for pr-146440
[INFO] extracting crate snp-index 0.1.2 into /workspace/builds/worker-7-tc1/source
[INFO] started tweaking crates.io crate snp-index 0.1.2
[INFO] removed 0 missing tests
[INFO] finished tweaking crates.io crate snp-index 0.1.2
[INFO] tweaked toml for crates.io crate snp-index 0.1.2 written to /workspace/builds/worker-7-tc1/source/Cargo.toml
[INFO] validating manifest of crates.io crate snp-index 0.1.2 on toolchain 507271bc119683008ec719ecee48814e8ac86c65
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+507271bc119683008ec719ecee48814e8ac86c65" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate snp-index 0.1.2 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+507271bc119683008ec719ecee48814e8ac86c65" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded stela-int-to-str v0.1.0
[INFO] [stderr]   Downloaded mapping_info v0.1.0
[INFO] [stderr]   Downloaded num-format v0.4.4
[INFO] [stderr]   Downloaded scdata v0.2.3
[INFO] [stderr]   Downloaded semver v0.1.20
[INFO] [stderr]   Downloaded newtype_derive v0.1.6
[INFO] [stderr]   Downloaded fs-utils v1.1.4
[INFO] [stderr]   Downloaded rustc_version v0.1.7
[INFO] [stderr]   Downloaded rust-htslib v1.0.0
[INFO] [stderr]   Downloaded linear-map v1.2.0
[INFO] [stderr]   Downloaded ieee754 v0.2.6
[INFO] [stderr]   Downloaded derive-new v0.7.0
[INFO] [stderr]   Downloaded derive-new v0.6.0
[INFO] [stderr]   Downloaded bio-types v1.0.4
[INFO] [stderr]   Downloaded gtf_splice_index v0.4.0
[INFO] [stderr]   Downloaded curl-sys v0.4.87+curl-8.19.0
[INFO] [stderr]   Downloaded hts-sys v2.2.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+507271bc119683008ec719ecee48814e8ac86c65" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 6e6c750fc3f03efd18618c806997adcec75b073fb7eda7037a278788316f5a18
[INFO] running `Command { std: "docker" "start" "-a" "6e6c750fc3f03efd18618c806997adcec75b073fb7eda7037a278788316f5a18", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "6e6c750fc3f03efd18618c806997adcec75b073fb7eda7037a278788316f5a18", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "6e6c750fc3f03efd18618c806997adcec75b073fb7eda7037a278788316f5a18", kill_on_drop: false }`
[INFO] [stdout] 6e6c750fc3f03efd18618c806997adcec75b073fb7eda7037a278788316f5a18
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+507271bc119683008ec719ecee48814e8ac86c65" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 069713e15a70c034e8f81e1664e795e7fc772d969070c5ec2baa990af2818b5c
[INFO] running `Command { std: "docker" "start" "-a" "069713e15a70c034e8f81e1664e795e7fc772d969070c5ec2baa990af2818b5c", kill_on_drop: false }`
[INFO] [stderr]    Compiling cc v1.2.60
[INFO] [stderr]     Checking zerofrom v0.1.7
[INFO] [stderr]    Compiling regex-syntax v0.8.10
[INFO] [stderr]    Compiling memchr v2.8.0
[INFO] [stderr]    Compiling bindgen v0.69.5
[INFO] [stderr]    Compiling itertools v0.12.1
[INFO] [stderr]    Compiling clang-sys v1.8.1
[INFO] [stderr]    Compiling bitflags v2.11.1
[INFO] [stderr]     Checking yoke v0.8.2
[INFO] [stderr]    Compiling lazycell v1.3.0
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]     Checking regex-automata v0.4.14
[INFO] [stderr]     Checking zerovec v0.11.6
[INFO] [stderr]     Checking zerotrie v0.2.4
[INFO] [stderr]    Compiling nom v7.1.3
[INFO] [stderr]     Checking tinystr v0.8.3
[INFO] [stderr]     Checking potential_utf v0.1.5
[INFO] [stderr]     Checking icu_collections v2.2.0
[INFO] [stderr]     Checking icu_locale_core v2.2.0
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling cmake v0.1.58
[INFO] [stderr]    Compiling openssl-src v300.6.0+3.6.2
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]     Checking either v1.15.0
[INFO] [stderr]     Checking icu_provider v2.2.0
[INFO] [stderr]     Checking rayon v1.12.0
[INFO] [stderr]    Compiling libz-sys v1.1.28
[INFO] [stderr]    Compiling openssl-sys v0.9.114
[INFO] [stderr]    Compiling zstd-sys v2.0.16+zstd.1.5.7
[INFO] [stderr]    Compiling bzip2-sys v0.1.13+1.0.8
[INFO] [stderr]    Compiling lzma-sys v0.1.20
[INFO] [stderr]    Compiling cexpr v0.6.0
[INFO] [stderr]    Compiling curl-sys v0.4.87+curl-8.19.0
[INFO] [stderr]    Compiling regex v1.12.3
[INFO] [stderr]     Checking icu_normalizer v2.2.0
[INFO] [stderr]     Checking icu_properties v2.2.0
[INFO] [stderr]     Checking console v0.16.3
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]     Checking num-format v0.4.4
[INFO] [stderr]     Checking indicatif v0.18.4
[INFO] [stderr]    Compiling strum_macros v0.26.4
[INFO] [stderr]    Compiling clap_derive v4.6.1
[INFO] [stderr]    Compiling thiserror-impl v2.0.18
[INFO] [stderr]     Checking idna_adapter v1.2.1
[INFO] [stderr]     Checking idna v1.1.0
[INFO] [stderr]    Compiling derive-new v0.6.0
[INFO] [stderr]     Checking url v2.5.8
[INFO] [stderr]     Checking bio-types v1.0.4
[INFO] [stderr]     Checking thiserror v2.0.18
[INFO] [stderr]     Checking mapping_info v0.1.0
[INFO] [stderr]     Checking bincode v1.3.3
[INFO] [stderr]    Compiling derive-new v0.7.0
[INFO] [stderr]     Checking ieee754 v0.2.6
[INFO] [stderr]     Checking stela-int-to-str v0.1.0
[INFO] [stderr]     Checking linear-map v1.2.0
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking scdata v0.2.3
[INFO] [stderr]     Checking clap v4.6.1
[INFO] [stderr]    Compiling zstd-safe v7.2.4
[INFO] [stderr]    Compiling hts-sys v2.2.0
[INFO] [stderr]     Checking zstd v0.13.3
[INFO] [stderr]     Checking gtf_splice_index v0.4.0
[INFO] [stderr]     Checking rust-htslib v1.0.0
[INFO] [stderr]     Checking snp-index v0.1.2 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused import: `crate::Strand`
[INFO] [stdout]   --> src/index.rs:17:5
[INFO] [stdout]    |
[INFO] [stdout] 17 | use crate::Strand;
[INFO] [stdout]    |     ^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `crate::ReadOpKind::*`
[INFO] [stdout]   --> src/index.rs:19:5
[INFO] [stdout]    |
[INFO] [stdout] 19 | use crate::ReadOpKind::*;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> src/index.rs:343:22
[INFO] [stdout]     |
[INFO] [stdout] 343 |             let Some(mut observed) = read.base_at_ref_pos(locus.pos0) else {
[INFO] [stdout]     |                      ----^^^^^^^^
[INFO] [stdout]     |                      |
[INFO] [stdout]     |                      help: remove this `mut`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_mut)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: associated function `complement` is never used
[INFO] [stdout]    --> src/index.rs:381:8
[INFO] [stdout]     |
[INFO] [stdout] 144 | impl SnpIndex {
[INFO] [stdout]     | ------------- associated function in this implementation
[INFO] [stdout] ...
[INFO] [stdout] 381 |     fn complement(b: u8) -> u8 {
[INFO] [stdout]     |        ^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `crate::Strand`
[INFO] [stdout]   --> src/index.rs:17:5
[INFO] [stdout]    |
[INFO] [stdout] 17 | use crate::Strand;
[INFO] [stdout]    |     ^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> src/index.rs:343:22
[INFO] [stdout]     |
[INFO] [stdout] 343 |             let Some(mut observed) = read.base_at_ref_pos(locus.pos0) else {
[INFO] [stdout]     |                      ----^^^^^^^^
[INFO] [stdout]     |                      |
[INFO] [stdout]     |                      help: remove this `mut`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_mut)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: associated function `complement` is never used
[INFO] [stdout]    --> src/index.rs:381:8
[INFO] [stdout]     |
[INFO] [stdout] 144 | impl SnpIndex {
[INFO] [stdout]     | ------------- associated function in this implementation
[INFO] [stdout] ...
[INFO] [stdout] 381 |     fn complement(b: u8) -> u8 {
[INFO] [stdout]     |        ^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 6m 40s
[INFO] running `Command { std: "docker" "inspect" "069713e15a70c034e8f81e1664e795e7fc772d969070c5ec2baa990af2818b5c", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "069713e15a70c034e8f81e1664e795e7fc772d969070c5ec2baa990af2818b5c", kill_on_drop: false }`
[INFO] [stdout] 069713e15a70c034e8f81e1664e795e7fc772d969070c5ec2baa990af2818b5c
