[INFO] cloning repository https://github.com/populationgenomics/rust_dupmark
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/populationgenomics/rust_dupmark" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fpopulationgenomics%2Frust_dupmark", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fpopulationgenomics%2Frust_dupmark'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] ca5f02cb4f8d644f14aae1686260090e62dbf4b5
[INFO] checking populationgenomics/rust_dupmark against try#0611f7de057c584b8771102fde7aed6c70c71d3b for pr-146440
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fpopulationgenomics%2Frust_dupmark" "/workspace/builds/worker-3-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-3-tc2/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/populationgenomics/rust_dupmark
[INFO] finished tweaking git repo https://github.com/populationgenomics/rust_dupmark
[INFO] tweaked toml for git repo https://github.com/populationgenomics/rust_dupmark written to /workspace/builds/worker-3-tc2/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/populationgenomics/rust_dupmark on toolchain 0611f7de057c584b8771102fde7aed6c70c71d3b
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+0611f7de057c584b8771102fde7aed6c70c71d3b" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/populationgenomics/rust_dupmark already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+0611f7de057c584b8771102fde7aed6c70c71d3b" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded derive-new v0.6.0
[INFO] [stderr]   Downloaded derive-new v0.7.0
[INFO] [stderr]   Downloaded newtype_derive v0.1.6
[INFO] [stderr]   Downloaded env_logger v0.11.9
[INFO] [stderr]   Downloaded linear-map v1.2.0
[INFO] [stderr]   Downloaded fastbloom v0.16.0
[INFO] [stderr]   Downloaded jiff v0.2.21
[INFO] [stderr]   Downloaded fs-utils v1.1.4
[INFO] [stderr]   Downloaded bio-types v1.0.4
[INFO] [stderr]   Downloaded env_filter v1.0.0
[INFO] [stderr]   Downloaded rustc_version v0.1.7
[INFO] [stderr]   Downloaded jiff-static v0.2.21
[INFO] [stderr]   Downloaded ieee754 v0.2.6
[INFO] [stderr]   Downloaded semver v0.1.20
[INFO] [stderr]   Downloaded rust-htslib v1.0.0
[INFO] [stderr]   Downloaded curl-sys v0.4.85+curl-8.18.0
[INFO] [stderr]   Downloaded openssl-src v300.5.5+3.5.5
[INFO] [stderr]   Downloaded hts-sys v2.2.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+0611f7de057c584b8771102fde7aed6c70c71d3b" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 61286125ff554e47b86af6942b5732a9aa712bf09f8a9acb7b1c396389461087
[INFO] running `Command { std: "docker" "start" "-a" "61286125ff554e47b86af6942b5732a9aa712bf09f8a9acb7b1c396389461087", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "61286125ff554e47b86af6942b5732a9aa712bf09f8a9acb7b1c396389461087", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "61286125ff554e47b86af6942b5732a9aa712bf09f8a9acb7b1c396389461087", kill_on_drop: false }`
[INFO] [stdout] 61286125ff554e47b86af6942b5732a9aa712bf09f8a9acb7b1c396389461087
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+0611f7de057c584b8771102fde7aed6c70c71d3b" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 5f32b09ed33d348f356188bc1860467652f9b1e4b05f16f81a65e0319805a6da
[INFO] running `Command { std: "docker" "start" "-a" "5f32b09ed33d348f356188bc1860467652f9b1e4b05f16f81a65e0319805a6da", kill_on_drop: false }`
[INFO] [stderr]    Compiling glob v0.3.3
[INFO] [stderr]     Checking litemap v0.8.1
[INFO] [stderr]     Checking writeable v0.6.2
[INFO] [stderr]    Compiling icu_normalizer_data v2.1.1
[INFO] [stderr]    Compiling icu_properties_data v2.1.2
[INFO] [stderr]    Compiling regex-syntax v0.8.10
[INFO] [stderr]    Compiling minimal-lexical v0.2.1
[INFO] [stderr]    Compiling either v1.15.0
[INFO] [stderr]    Compiling zerocopy v0.8.39
[INFO] [stderr]    Compiling bindgen v0.69.5
[INFO] [stderr]    Compiling libc v0.2.182
[INFO] [stderr]     Checking aho-corasick v1.1.4
[INFO] [stderr]    Compiling libloading v0.8.9
[INFO] [stderr]    Compiling syn v2.0.117
[INFO] [stderr]    Compiling bitflags v2.11.0
[INFO] [stderr]     Checking smallvec v1.15.1
[INFO] [stderr]    Compiling itertools v0.12.1
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling lazycell v1.3.0
[INFO] [stderr]    Compiling nom v7.1.3
[INFO] [stderr]    Compiling rustc-hash v1.1.0
[INFO] [stderr]    Compiling lazy_static v1.5.0
[INFO] [stderr]     Checking getrandom v0.3.4
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]     Checking percent-encoding v2.3.2
[INFO] [stderr]     Checking libm v0.2.16
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking ieee754 v0.2.6
[INFO] [stderr]     Checking rand_core v0.9.5
[INFO] [stderr]     Checking foldhash v0.2.0
[INFO] [stderr]     Checking form_urlencoded v1.2.2
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]     Checking siphasher v1.0.2
[INFO] [stderr]     Checking linear-map v1.2.0
[INFO] [stderr]    Compiling clang-sys v1.8.1
[INFO] [stderr]     Checking jiff v0.2.21
[INFO] [stderr]    Compiling jobserver v0.1.34
[INFO] [stderr]    Compiling regex-automata v0.4.14
[INFO] [stderr]    Compiling cc v1.2.56
[INFO] [stderr]    Compiling cexpr v0.6.0
[INFO] [stderr]    Compiling openssl-src v300.5.5+3.5.5
[INFO] [stderr]    Compiling cmake v0.1.57
[INFO] [stderr]    Compiling libz-sys v1.1.24
[INFO] [stderr]    Compiling lzma-sys v0.1.20
[INFO] [stderr]    Compiling curl-sys v0.4.85+curl-8.18.0
[INFO] [stderr]    Compiling bzip2-sys v0.1.13+1.0.8
[INFO] [stderr]    Compiling openssl-sys v0.9.111
[INFO] [stderr]    Compiling regex v1.12.3
[INFO] [stderr]    Compiling synstructure v0.13.2
[INFO] [stderr]     Checking env_filter v1.0.0
[INFO] [stderr]     Checking env_logger v0.11.9
[INFO] [stderr]    Compiling zerovec-derive v0.11.2
[INFO] [stderr]    Compiling displaydoc v0.2.5
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling thiserror-impl v2.0.18
[INFO] [stderr]    Compiling strum_macros v0.26.4
[INFO] [stderr]    Compiling derive-new v0.6.0
[INFO] [stderr]    Compiling clap_derive v4.5.55
[INFO] [stderr]    Compiling derive-new v0.7.0
[INFO] [stderr]    Compiling zerofrom-derive v0.1.6
[INFO] [stderr]    Compiling yoke-derive v0.8.1
[INFO] [stderr]     Checking ppv-lite86 v0.2.21
[INFO] [stderr]     Checking thiserror v1.0.69
[INFO] [stderr]     Checking clap v4.5.60
[INFO] [stderr]     Checking rand_chacha v0.9.0
[INFO] [stderr]     Checking rand v0.9.2
[INFO] [stderr]     Checking thiserror v2.0.18
[INFO] [stderr]     Checking zerofrom v0.1.6
[INFO] [stderr]     Checking yoke v0.8.1
[INFO] [stderr]     Checking bio-types v1.0.4
[INFO] [stderr]     Checking zerovec v0.11.5
[INFO] [stderr]     Checking zerotrie v0.2.3
[INFO] [stderr]     Checking fastbloom v0.16.0
[INFO] [stderr]     Checking tinystr v0.8.2
[INFO] [stderr]     Checking potential_utf v0.1.4
[INFO] [stderr]     Checking icu_collections v2.1.1
[INFO] [stderr]     Checking icu_locale_core v2.1.1
[INFO] [stderr]     Checking icu_provider v2.1.1
[INFO] [stderr]     Checking icu_properties v2.1.2
[INFO] [stderr]     Checking icu_normalizer v2.1.1
[INFO] [stderr]    Compiling hts-sys v2.2.0
[INFO] [stderr]     Checking idna_adapter v1.2.1
[INFO] [stderr]     Checking idna v1.1.0
[INFO] [stderr]     Checking url v2.5.8
[INFO] [stderr]     Checking rust-htslib v1.0.0
[INFO] [stderr]     Checking dupmark v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 3m 08s
[INFO] running `Command { std: "docker" "inspect" "5f32b09ed33d348f356188bc1860467652f9b1e4b05f16f81a65e0319805a6da", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "5f32b09ed33d348f356188bc1860467652f9b1e4b05f16f81a65e0319805a6da", kill_on_drop: false }`
[INFO] [stdout] 5f32b09ed33d348f356188bc1860467652f9b1e4b05f16f81a65e0319805a6da
