[INFO] fetching crate heme 0.3.2...
[INFO] checking heme-0.3.2 against master#9e293ae9f8abecb0be5105787d181518c9012a19 for pr-146440-1
[INFO] extracting crate heme 0.3.2 into /workspace/builds/worker-2-tc1/source
[INFO] started tweaking crates.io crate heme 0.3.2
[INFO] finished tweaking crates.io crate heme 0.3.2
[INFO] tweaked toml for crates.io crate heme 0.3.2 written to /workspace/builds/worker-2-tc1/source/Cargo.toml
[INFO] validating manifest of crates.io crate heme 0.3.2 on toolchain 9e293ae9f8abecb0be5105787d181518c9012a19
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+9e293ae9f8abecb0be5105787d181518c9012a19" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate heme 0.3.2 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+9e293ae9f8abecb0be5105787d181518c9012a19" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr] warning: Cargo.toml: `package.edition` is unspecified, defaulting to `2015` while the latest is `2024`
[INFO] [stderr] warning: `heme` (manifest) generated 1 warning
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+9e293ae9f8abecb0be5105787d181518c9012a19" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 4f173297edf32d7d5e8ee7d26a4fb5d001731dbb262d35002080ffaf596dd014
[INFO] running `Command { std: "docker" "start" "-a" "4f173297edf32d7d5e8ee7d26a4fb5d001731dbb262d35002080ffaf596dd014", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "4f173297edf32d7d5e8ee7d26a4fb5d001731dbb262d35002080ffaf596dd014", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "4f173297edf32d7d5e8ee7d26a4fb5d001731dbb262d35002080ffaf596dd014", kill_on_drop: false }`
[INFO] [stdout] 4f173297edf32d7d5e8ee7d26a4fb5d001731dbb262d35002080ffaf596dd014
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+9e293ae9f8abecb0be5105787d181518c9012a19" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] b11104355d14f270187c5c2732e17b12f54560292a25d856388c12a63fa39ad8
[INFO] running `Command { std: "docker" "start" "-a" "b11104355d14f270187c5c2732e17b12f54560292a25d856388c12a63fa39ad8", kill_on_drop: false }`
[INFO] [stderr] warning: Cargo.toml: `package.edition` is unspecified, defaulting to `2015` while the latest is `2024`
[INFO] [stderr] warning: `heme` (manifest) generated 1 warning
[INFO] [stderr]     Checking heme v0.3.2 (/opt/rustwide/workdir)
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/sampling.rs:20:29
[INFO] [stdout]    |
[INFO] [stdout] 20 |     pub components: Vec<Box<Move>>,
[INFO] [stdout]    |                             ^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout]    = note: `#[warn(bare_trait_objects)]` (part of `#[warn(rust_2021_compatibility)]`) on by default
[INFO] [stdout] help: if this is a dyn-compatible trait, use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 20 |     pub components: Vec<Box<dyn Move>>,
[INFO] [stdout]    |                             +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/io.rs:97:46
[INFO] [stdout]    |
[INFO] [stdout] 97 | pub fn run(config: Config) -> Result<(), Box<Error>> {
[INFO] [stdout]    |                                              ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: if this is a dyn-compatible trait, use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 97 | pub fn run(config: Config) -> Result<(), Box<dyn Error>> {
[INFO] [stdout]    |                                              +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `protocol_name`
[INFO] [stdout]  --> src/sampling.rs:4:21
[INFO] [stdout]   |
[INFO] [stdout] 4 | pub fn get_protocol(protocol_name: &str) -> Protocol {
[INFO] [stdout]   |                     ^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_protocol_name`
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `pose`
[INFO] [stdout]   --> src/sampling.rs:50:21
[INFO] [stdout]    |
[INFO] [stdout] 50 |     fn apply(&self, pose: &mut Pose) {
[INFO] [stdout]    |                     ^^^^ help: if this is intentional, prefix it with an underscore: `_pose`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `a1`
[INFO] [stdout]   --> src/scoring.rs:24:39
[INFO] [stdout]    |
[INFO] [stdout] 24 | pub fn calculate_lennard_jones_energy(a1: &Atom, a2: &Atom, r: f64) -> f64 {
[INFO] [stdout]    |                                       ^^ help: if this is intentional, prefix it with an underscore: `_a1`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `a2`
[INFO] [stdout]   --> src/scoring.rs:24:50
[INFO] [stdout]    |
[INFO] [stdout] 24 | pub fn calculate_lennard_jones_energy(a1: &Atom, a2: &Atom, r: f64) -> f64 {
[INFO] [stdout]    |                                                  ^^ help: if this is intentional, prefix it with an underscore: `_a2`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: fields `atoms`, `residue_name`, and `residue_index` are never read
[INFO] [stdout]   --> src/conformation.rs:52:5
[INFO] [stdout]    |
[INFO] [stdout] 51 | pub struct Residue {
[INFO] [stdout]    |            ------- fields in this struct
[INFO] [stdout] 52 |     atoms: Vec<Atom>,
[INFO] [stdout]    |     ^^^^^
[INFO] [stdout] 53 |     residue_name: String,
[INFO] [stdout]    |     ^^^^^^^^^^^^
[INFO] [stdout] 54 |     residue_index: i32,
[INFO] [stdout]    |     ^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `H` should have a snake case name
[INFO] [stdout]    --> src/io.rs:152:12
[INFO] [stdout]     |
[INFO] [stdout] 152 |         fn H(l: &f64) -> f64 {
[INFO] [stdout]     |            ^ help: convert the identifier to snake case: `h`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(non_snake_case)]` (part of `#[warn(nonstandard_style)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/sampling.rs:20:29
[INFO] [stdout]    |
[INFO] [stdout] 20 |     pub components: Vec<Box<Move>>,
[INFO] [stdout]    |                             ^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout]    = note: `#[warn(bare_trait_objects)]` (part of `#[warn(rust_2021_compatibility)]`) on by default
[INFO] [stdout] help: if this is a dyn-compatible trait, use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 20 |     pub components: Vec<Box<dyn Move>>,
[INFO] [stdout]    |                             +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/io.rs:97:46
[INFO] [stdout]    |
[INFO] [stdout] 97 | pub fn run(config: Config) -> Result<(), Box<Error>> {
[INFO] [stdout]    |                                              ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/edition-guide/rust-2021/warnings-promoted-to-error.html>
[INFO] [stdout] help: if this is a dyn-compatible trait, use `dyn`
[INFO] [stdout]    |
[INFO] [stdout] 97 | pub fn run(config: Config) -> Result<(), Box<dyn Error>> {
[INFO] [stdout]    |                                              +++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `protocol_name`
[INFO] [stdout]  --> src/sampling.rs:4:21
[INFO] [stdout]   |
[INFO] [stdout] 4 | pub fn get_protocol(protocol_name: &str) -> Protocol {
[INFO] [stdout]   |                     ^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_protocol_name`
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `pose`
[INFO] [stdout]   --> src/sampling.rs:50:21
[INFO] [stdout]    |
[INFO] [stdout] 50 |     fn apply(&self, pose: &mut Pose) {
[INFO] [stdout]    |                     ^^^^ help: if this is intentional, prefix it with an underscore: `_pose`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `a1`
[INFO] [stdout]   --> src/scoring.rs:24:39
[INFO] [stdout]    |
[INFO] [stdout] 24 | pub fn calculate_lennard_jones_energy(a1: &Atom, a2: &Atom, r: f64) -> f64 {
[INFO] [stdout]    |                                       ^^ help: if this is intentional, prefix it with an underscore: `_a1`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `a2`
[INFO] [stdout]   --> src/scoring.rs:24:50
[INFO] [stdout]    |
[INFO] [stdout] 24 | pub fn calculate_lennard_jones_energy(a1: &Atom, a2: &Atom, r: f64) -> f64 {
[INFO] [stdout]    |                                                  ^^ help: if this is intentional, prefix it with an underscore: `_a2`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: fields `atoms`, `residue_name`, and `residue_index` are never read
[INFO] [stdout]   --> src/conformation.rs:52:5
[INFO] [stdout]    |
[INFO] [stdout] 51 | pub struct Residue {
[INFO] [stdout]    |            ------- fields in this struct
[INFO] [stdout] 52 |     atoms: Vec<Atom>,
[INFO] [stdout]    |     ^^^^^
[INFO] [stdout] 53 |     residue_name: String,
[INFO] [stdout]    |     ^^^^^^^^^^^^
[INFO] [stdout] 54 |     residue_index: i32,
[INFO] [stdout]    |     ^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 0.21s
[INFO] running `Command { std: "docker" "inspect" "b11104355d14f270187c5c2732e17b12f54560292a25d856388c12a63fa39ad8", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "b11104355d14f270187c5c2732e17b12f54560292a25d856388c12a63fa39ad8", kill_on_drop: false }`
[INFO] [stdout] b11104355d14f270187c5c2732e17b12f54560292a25d856388c12a63fa39ad8
