[INFO] fetching crate mscore 0.3.3... [INFO] testing mscore-0.3.3 against master#ad85bc524b1ad696e42061ad8338d382dffbdbe5 for pr-146237 [INFO] extracting crate mscore 0.3.3 into /workspace/builds/worker-5-tc1/source [INFO] started tweaking crates.io crate mscore 0.3.3 [INFO] finished tweaking crates.io crate mscore 0.3.3 [INFO] tweaked toml for crates.io crate mscore 0.3.3 written to /workspace/builds/worker-5-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate mscore 0.3.3 on toolchain ad85bc524b1ad696e42061ad8338d382dffbdbe5 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate mscore 0.3.3 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Updating crates.io index [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded wide v0.7.32 [INFO] [stderr] Downloaded statrs v0.18.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] f64aa909541723dd4f8279964b5b3be431d8bbd88117f0e1d6400b6f58dfdedc [INFO] running `Command { std: "docker" "start" "-a" "f64aa909541723dd4f8279964b5b3be431d8bbd88117f0e1d6400b6f58dfdedc", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "f64aa909541723dd4f8279964b5b3be431d8bbd88117f0e1d6400b6f58dfdedc", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "f64aa909541723dd4f8279964b5b3be431d8bbd88117f0e1d6400b6f58dfdedc", kill_on_drop: false }` [INFO] [stdout] f64aa909541723dd4f8279964b5b3be431d8bbd88117f0e1d6400b6f58dfdedc [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 03b2d3beb40e23e76252ea3945a1c862d818d2480dd09ab736440318e93f1132 [INFO] running `Command { std: "docker" "start" "-a" "03b2d3beb40e23e76252ea3945a1c862d818d2480dd09ab736440318e93f1132", kill_on_drop: false }` [INFO] [stderr] Compiling libm v0.2.15 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling libc v0.2.172 [INFO] [stderr] Compiling bytemuck v1.23.0 [INFO] [stderr] Compiling matrixmultiply v0.3.10 [INFO] [stderr] Compiling rawpointer v0.2.1 [INFO] [stderr] Compiling itertools v0.14.0 [INFO] [stderr] Compiling syn v2.0.101 [INFO] [stderr] Compiling safe_arch v0.7.4 [INFO] [stderr] Compiling wide v0.7.32 [INFO] [stderr] Compiling getrandom v0.2.16 [INFO] [stderr] Compiling rand_core v0.6.4 [INFO] [stderr] Compiling rand_chacha v0.3.1 [INFO] [stderr] Compiling rand v0.8.5 [INFO] [stderr] Compiling approx v0.5.1 [INFO] [stderr] Compiling num-complex v0.4.6 [INFO] [stderr] Compiling num-integer v0.1.46 [INFO] [stderr] Compiling rand_distr v0.4.3 [INFO] [stderr] Compiling ordered-float v4.6.0 [INFO] [stderr] Compiling num-rational v0.4.2 [INFO] [stderr] Compiling simba v0.9.0 [INFO] [stderr] Compiling nalgebra-macros v0.2.2 [INFO] [stderr] Compiling serde_derive v1.0.219 [INFO] [stderr] Compiling serde v1.0.219 [INFO] [stderr] Compiling nalgebra v0.33.2 [INFO] [stderr] Compiling statrs v0.18.0 [INFO] [stderr] Compiling mscore v0.3.3 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 29.73s [INFO] running `Command { std: "docker" "inspect" "03b2d3beb40e23e76252ea3945a1c862d818d2480dd09ab736440318e93f1132", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "03b2d3beb40e23e76252ea3945a1c862d818d2480dd09ab736440318e93f1132", kill_on_drop: false }` [INFO] [stdout] 03b2d3beb40e23e76252ea3945a1c862d818d2480dd09ab736440318e93f1132 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 3fd1c90529ee22638631f058d16fbbc94d80ad3494e660c61df3025402a69009 [INFO] running `Command { std: "docker" "start" "-a" "3fd1c90529ee22638631f058d16fbbc94d80ad3494e660c61df3025402a69009", kill_on_drop: false }` [INFO] [stderr] Compiling mscore v0.3.3 (/opt/rustwide/workdir) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 2.31s [INFO] running `Command { std: "docker" "inspect" "3fd1c90529ee22638631f058d16fbbc94d80ad3494e660c61df3025402a69009", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "3fd1c90529ee22638631f058d16fbbc94d80ad3494e660c61df3025402a69009", kill_on_drop: false }` [INFO] [stdout] 3fd1c90529ee22638631f058d16fbbc94d80ad3494e660c61df3025402a69009 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] e92c44bbb6c6c0371ceba20374defe2fad7766f2a1c518e417ac9f7d9abb5f78 [INFO] running `Command { std: "docker" "start" "-a" "e92c44bbb6c6c0371ceba20374defe2fad7766f2a1c518e417ac9f7d9abb5f78", kill_on_drop: false }` [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.07s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/mscore-162e453895c28584) [INFO] [stdout] [INFO] [stdout] running 5 tests [INFO] [stdout] test algorithm::utility::tests::test_calculate_frame_abundance_gaussian ... ok [INFO] [stdout] test algorithm::utility::tests::test_calculate_frame_occurrence_gaussian ... ok [INFO] [stdout] test algorithm::utility::tests::test_normal_cdf_range ... ok [INFO] [stdout] test algorithm::utility::tests::test_calculate_bounds_gaussian ... ok [INFO] [stdout] test algorithm::utility::tests::test_parallel_functions ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 5 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests src/main.rs (/opt/rustwide/target/debug/deps/mscore-9fc6b3d8f9f67730) [INFO] [stdout] [INFO] [stderr] Doc-tests mscore [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 52 tests [INFO] [stdout] test src/algorithm/peptide.rs - algorithm::peptide::get_num_protonizable_sites (line 311) ... ok [INFO] [stdout] test src/algorithm/isotope.rs - algorithm::isotope::generate_isotope_distribution (line 148) ... ok [INFO] [stdout] test src/algorithm/isotope.rs - algorithm::isotope::lam (line 323) ... ok [INFO] [stdout] test src/algorithm/peptide.rs - algorithm::peptide::calculate_peptide_product_ion_mono_isotopic_mass (line 85) ... ok [INFO] [stdout] test src/algorithm/isotope.rs - algorithm::isotope::factorial (line 279) ... ok [INFO] [stdout] test src/algorithm/peptide.rs - algorithm::peptide::calculate_peptide_mono_isotopic_mass (line 27) ... ok [INFO] [stdout] test src/algorithm/isotope.rs - algorithm::isotope::generate_averagine_spectrum (line 450) ... ok [INFO] [stdout] test src/algorithm/isotope.rs - algorithm::isotope::generate_averagine_spectra (line 514) ... ok [INFO] [stdout] test src/algorithm/peptide.rs - algorithm::peptide::calculate_product_ion_mz (line 138) ... ok [INFO] [stdout] test src/algorithm/isotope.rs - algorithm::isotope::generate_isotope_pattern (line 404) ... ok [INFO] [stdout] test src/algorithm/isotope.rs - algorithm::isotope::normal_pdf (line 256) ... ok [INFO] [stdout] test src/algorithm/peptide.rs - algorithm::peptide::calculate_amino_acid_composition (line 163) ... ok [INFO] [stdout] test src/algorithm/peptide.rs - algorithm::peptide::simulate_charge_state_for_sequence (line 343) ... ok [INFO] [stdout] test src/algorithm/isotope.rs - algorithm::isotope::convolve (line 30) ... ok [INFO] [stdout] test src/algorithm/isotope.rs - algorithm::isotope::convolve_pow (line 96) ... ok [INFO] [stdout] test src/chemistry/elements.rs - chemistry::elements::atomic_weights_mono_isotopic (line 15) ... ok [INFO] [stdout] test src/algorithm/peptide.rs - algorithm::peptide::simulate_charge_states_for_sequences (line 381) ... ok [INFO] [stdout] test src/chemistry/amino_acid.rs - chemistry::amino_acid::amino_acid_composition (line 104) ... ok [INFO] [stdout] test src/algorithm/utility.rs - algorithm::utility::calculate_scan_occurrence_gaussian (line 317) ... ok [INFO] [stdout] test src/chemistry/amino_acid.rs - chemistry::amino_acid::amino_acid_masses (line 60) ... ok [INFO] [stdout] test src/chemistry/utility.rs - chemistry::utility::find_unimod_patterns (line 83) ... ok [INFO] [stdout] test src/chemistry/elements.rs - chemistry::elements::isotopic_abundance (line 215) ... ok [INFO] [stdout] test src/chemistry/unimod.rs - chemistry::unimod::unimod_modifications_mass_numerical (line 1108) ... ok [INFO] [stdout] test src/chemistry/unimod.rs - chemistry::unimod::unimod_modifications_mass (line 57) ... ok [INFO] [stdout] test src/chemistry/elements.rs - chemistry::elements::atoms_isotopic_weights (line 157) ... ok [INFO] [stdout] test src/data/spectrum.rs - data::spectrum::IndexedMzSpectrum::to_resolution (line 508) ... ok [INFO] [stdout] test src/chemistry/formulas.rs - chemistry::formulas::calculate_mz (line 90) ... ok [INFO] [stdout] test src/chemistry/utility.rs - chemistry::utility::reshape_prosit_array (line 154) ... ok [INFO] [stdout] test src/chemistry/formulas.rs - chemistry::formulas::ccs_to_one_over_reduced_mobility (line 58) ... ok [INFO] [stdout] test src/data/spectrum.rs - data::spectrum::IndexedMzSpectrum::vectorized (line 551) ... ok [INFO] [stdout] test src/data/spectrum.rs - data::spectrum::IndexedMzSpectrum::new (line 490) ... ok [INFO] [stdout] test src/chemistry/unimod.rs - chemistry::unimod::modification_atomic_composition (line 15) ... ok [INFO] [stdout] test src/chemistry/formulas.rs - chemistry::formulas::one_over_reduced_mobility_to_ccs (line 20) ... ok [INFO] [stdout] test src/chemistry/utility.rs - chemistry::utility::unimod_sequence_to_tokens (line 17) ... ok [INFO] [stdout] test src/chemistry/amino_acid.rs - chemistry::amino_acid::amino_acids (line 15) ... ok [INFO] [stdout] test src/timstof/quadrupole.rs - timstof::quadrupole::smooth_step (line 24) ... ok [INFO] [stdout] test src/timstof/frame.rs - timstof::frame::TimsFrame (line 710) ... ok [INFO] [stdout] test src/data/spectrum.rs - data::spectrum::MzSpectrum::to_resolution (line 313) ... ok [INFO] [stdout] test src/timstof/frame.rs - timstof::frame::TimsFrame::to_tims_spectra (line 173) ... ok [INFO] [stdout] test src/data/spectrum.rs - data::spectrum::MzSpectrum::add (line 383) ... ok [INFO] [stdout] test src/timstof/frame.rs - timstof::frame::TimsFrame::get_ims_frame (line 159) ... ok [INFO] [stdout] test src/timstof/quadrupole.rs - timstof::quadrupole::apply_transmission (line 120) ... ok [INFO] [stdout] test src/timstof/frame.rs - timstof::frame::ImsFrame::new (line 81) ... ok [INFO] [stdout] test src/timstof/frame.rs - timstof::frame::TimsFrame::filter_ranged (line 223) ... ok [INFO] [stdout] test src/timstof/slice.rs - timstof::slice::TimsSlice::new (line 31) ... ok [INFO] [stdout] test src/data/spectrum.rs - data::spectrum::MzSpectrum::to_windows (line 150) ... ok [INFO] [stdout] test src/timstof/spectrum.rs - timstof::spectrum::TimsSpectrum::new (line 39) ... ok [INFO] [stdout] test src/data/spectrum.rs - data::spectrum::MzSpectrum::new (line 103) ... ok [INFO] [stdout] test src/timstof/quadrupole.rs - timstof::quadrupole::smooth_step_up_down (line 54) ... ok [INFO] [stdout] test src/timstof/quadrupole.rs - timstof::quadrupole::ion_transition_function_midpoint (line 82) ... ok [INFO] [stdout] test src/timstof/frame.rs - timstof::frame::TimsFrame::new (line 143) ... ok [INFO] [stdout] test src/timstof/slice.rs - timstof::slice::TimsSlice::filter_ranged (line 58) ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 52 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 9.06s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "e92c44bbb6c6c0371ceba20374defe2fad7766f2a1c518e417ac9f7d9abb5f78", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "e92c44bbb6c6c0371ceba20374defe2fad7766f2a1c518e417ac9f7d9abb5f78", kill_on_drop: false }` [INFO] [stdout] e92c44bbb6c6c0371ceba20374defe2fad7766f2a1c518e417ac9f7d9abb5f78