[INFO] fetching crate microbiorust-py 0.1.1... [INFO] testing microbiorust-py-0.1.1 against master#ad85bc524b1ad696e42061ad8338d382dffbdbe5 for pr-146237 [INFO] extracting crate microbiorust-py 0.1.1 into /workspace/builds/worker-6-tc1/source [INFO] started tweaking crates.io crate microbiorust-py 0.1.1 [INFO] finished tweaking crates.io crate microbiorust-py 0.1.1 [INFO] tweaked toml for crates.io crate microbiorust-py 0.1.1 written to /workspace/builds/worker-6-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate microbiorust-py 0.1.1 on toolchain ad85bc524b1ad696e42061ad8338d382dffbdbe5 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate microbiorust-py 0.1.1 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded pyo3-macros v0.25.1 [INFO] [stderr] Downloaded indoc v2.0.6 [INFO] [stderr] Downloaded unindent v0.2.4 [INFO] [stderr] Downloaded memoffset v0.9.1 [INFO] [stderr] Downloaded target-lexicon v0.13.2 [INFO] [stderr] Downloaded multimap v0.10.1 [INFO] [stderr] Downloaded editdistancek v1.0.2 [INFO] [stderr] Downloaded semver v0.1.20 [INFO] [stderr] Downloaded bit-set v0.8.0 [INFO] [stderr] Downloaded feature-probe v0.1.1 [INFO] [stderr] Downloaded bio-types v1.0.4 [INFO] [stderr] Downloaded bv v0.11.1 [INFO] [stderr] Downloaded rand_distr v0.4.3 [INFO] [stderr] Downloaded microBioRust v0.1.2 [INFO] [stderr] Downloaded portable-atomic-util v0.2.4 [INFO] [stderr] Downloaded strum_macros v0.26.4 [INFO] [stderr] Downloaded triple_accel v0.4.0 [INFO] [stderr] Downloaded pyo3-macros-backend v0.25.1 [INFO] [stderr] Downloaded bit-vec v0.8.0 [INFO] [stderr] Downloaded bytecount v0.6.9 [INFO] [stderr] Downloaded custom_derive v0.1.7 [INFO] [stderr] Downloaded enum-map v2.7.3 [INFO] [stderr] Downloaded statrs v0.18.0 [INFO] [stderr] Downloaded itertools-num v0.1.3 [INFO] [stderr] Downloaded rustc_version v0.1.7 [INFO] [stderr] Downloaded bio v2.3.0 [INFO] [stderr] Downloaded foldhash v0.1.5 [INFO] [stderr] Downloaded enum-map-derive v0.17.0 [INFO] [stderr] Downloaded ndarray v0.16.1 [INFO] [stderr] Downloaded ordered-float v5.0.0 [INFO] [stderr] Downloaded vec_map v0.8.2 [INFO] [stderr] Downloaded pyo3-ffi v0.25.1 [INFO] [stderr] Downloaded protein-translate v0.2.0 [INFO] [stderr] Downloaded newtype_derive v0.1.6 [INFO] [stderr] Downloaded strum v0.26.3 [INFO] [stderr] Downloaded pyo3-build-config v0.25.1 [INFO] [stderr] Downloaded pyo3 v0.25.1 [INFO] [stderr] Downloaded petgraph v0.8.2 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] d9704b50ec4b68a54ceffa9a4bdb48aa827b8f676129fb10648df50591a4d019 [INFO] running `Command { std: "docker" "start" "-a" "d9704b50ec4b68a54ceffa9a4bdb48aa827b8f676129fb10648df50591a4d019", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "d9704b50ec4b68a54ceffa9a4bdb48aa827b8f676129fb10648df50591a4d019", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "d9704b50ec4b68a54ceffa9a4bdb48aa827b8f676129fb10648df50591a4d019", kill_on_drop: false }` [INFO] [stdout] d9704b50ec4b68a54ceffa9a4bdb48aa827b8f676129fb10648df50591a4d019 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 17ec36f8fee3672b49ddb45710c06d6d19d63e17221b8c6a2192fe63acbb727f [INFO] running `Command { std: "docker" "start" "-a" "17ec36f8fee3672b49ddb45710c06d6d19d63e17221b8c6a2192fe63acbb727f", kill_on_drop: false }` [INFO] [stderr] Compiling autocfg v1.5.0 [INFO] [stderr] Compiling libm v0.2.15 [INFO] [stderr] Compiling target-lexicon v0.13.2 [INFO] [stderr] Compiling libc v0.2.174 [INFO] [stderr] Compiling zerocopy v0.8.26 [INFO] [stderr] Compiling cfg-if v1.0.1 [INFO] [stderr] Compiling memchr v2.7.5 [INFO] [stderr] Compiling bytemuck v1.23.1 [INFO] [stderr] Compiling paste v1.0.15 [INFO] [stderr] Compiling rustversion v1.0.21 [INFO] [stderr] Compiling rawpointer v0.2.1 [INFO] [stderr] Compiling serde v1.0.219 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling equivalent v1.0.2 [INFO] [stderr] Compiling syn v2.0.104 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Compiling utf8parse v0.2.2 [INFO] [stderr] Compiling thiserror v1.0.69 [INFO] [stderr] Compiling foldhash v0.1.5 [INFO] [stderr] Compiling regex-syntax v0.8.5 [INFO] [stderr] Compiling allocator-api2 v0.2.21 [INFO] [stderr] Compiling safe_arch v0.7.4 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Compiling anstyle-parse v0.2.7 [INFO] [stderr] Compiling wide v0.7.33 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling either v1.15.0 [INFO] [stderr] Compiling colorchoice v1.0.4 [INFO] [stderr] Compiling anstyle-query v1.1.3 [INFO] [stderr] Compiling hashbrown v0.15.4 [INFO] [stderr] Compiling is_terminal_polyfill v1.70.1 [INFO] [stderr] Compiling pyo3-build-config v0.25.1 [INFO] [stderr] Compiling anstyle v1.0.11 [INFO] [stderr] Compiling anyhow v1.0.98 [INFO] [stderr] Compiling byteorder v1.5.0 [INFO] [stderr] Compiling clap_lex v0.7.5 [INFO] [stderr] Compiling anstream v0.6.19 [INFO] [stderr] Compiling strsim v0.11.1 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling matrixmultiply v0.3.10 [INFO] [stderr] Compiling memoffset v0.9.1 [INFO] [stderr] Compiling aho-corasick v1.1.3 [INFO] [stderr] Compiling csv-core v0.1.12 [INFO] [stderr] Compiling bit-vec v0.8.0 [INFO] [stderr] Compiling fixedbitset v0.5.7 [INFO] [stderr] Compiling bit-set v0.8.0 [INFO] [stderr] Compiling indexmap v2.9.0 [INFO] [stderr] Compiling fxhash v0.2.1 [INFO] [stderr] Compiling getrandom v0.2.16 [INFO] [stderr] Compiling clap_builder v4.5.40 [INFO] [stderr] Compiling itertools v0.14.0 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling editdistancek v1.0.2 [INFO] [stderr] Compiling bytecount v0.6.9 [INFO] [stderr] Compiling rand_core v0.6.4 [INFO] [stderr] Compiling strum v0.26.3 [INFO] [stderr] Compiling triple_accel v0.4.0 [INFO] [stderr] Compiling itertools v0.10.5 [INFO] [stderr] Compiling unindent v0.2.4 [INFO] [stderr] Compiling regex-automata v0.4.9 [INFO] [stderr] Compiling petgraph v0.8.2 [INFO] [stderr] Compiling indoc v2.0.6 [INFO] [stderr] Compiling protein-translate v0.2.0 [INFO] [stderr] Compiling ppv-lite86 v0.2.21 [INFO] [stderr] Compiling num-complex v0.4.6 [INFO] [stderr] Compiling num-integer v0.1.46 [INFO] [stderr] Compiling approx v0.5.1 [INFO] [stderr] Compiling ordered-float v5.0.0 [INFO] [stderr] Compiling rand_chacha v0.3.1 [INFO] [stderr] Compiling rand v0.8.5 [INFO] [stderr] Compiling pyo3-ffi v0.25.1 [INFO] [stderr] Compiling pyo3-macros-backend v0.25.1 [INFO] [stderr] Compiling num-rational v0.4.2 [INFO] [stderr] Compiling pyo3 v0.25.1 [INFO] [stderr] Compiling itertools-num v0.1.3 [INFO] [stderr] Compiling simba v0.9.0 [INFO] [stderr] Compiling ndarray v0.16.1 [INFO] [stderr] Compiling chrono v0.4.41 [INFO] [stderr] Compiling rand_distr v0.4.3 [INFO] [stderr] Compiling serde_derive v1.0.219 [INFO] [stderr] Compiling thiserror-impl v1.0.69 [INFO] [stderr] Compiling derive-new v0.6.0 [INFO] [stderr] Compiling enum-map-derive v0.17.0 [INFO] [stderr] Compiling strum_macros v0.26.4 [INFO] [stderr] Compiling thiserror-impl v2.0.12 [INFO] [stderr] Compiling clap_derive v4.5.40 [INFO] [stderr] Compiling enum-map v2.7.3 [INFO] [stderr] Compiling regex v1.11.1 [INFO] [stderr] Compiling thiserror v2.0.12 [INFO] [stderr] Compiling clap v4.5.40 [INFO] [stderr] Compiling bio-types v1.0.4 [INFO] [stderr] Compiling pyo3-macros v0.25.1 [INFO] [stderr] Compiling csv v1.3.1 [INFO] [stderr] Compiling multimap v0.10.1 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling nalgebra v0.33.2 [INFO] [stderr] Compiling statrs v0.18.0 [INFO] [stderr] Compiling bio v2.3.0 [INFO] [stderr] Compiling microBioRust v0.1.2 [INFO] [stderr] Compiling microbiorust-py v0.1.1 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 55.32s [INFO] running `Command { std: "docker" "inspect" "17ec36f8fee3672b49ddb45710c06d6d19d63e17221b8c6a2192fe63acbb727f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "17ec36f8fee3672b49ddb45710c06d6d19d63e17221b8c6a2192fe63acbb727f", kill_on_drop: false }` [INFO] [stdout] 17ec36f8fee3672b49ddb45710c06d6d19d63e17221b8c6a2192fe63acbb727f [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 8a893e419a61948ff800aed9e30482a2467844cb691b17a0312ac2f7707a5bb5 [INFO] running `Command { std: "docker" "start" "-a" "8a893e419a61948ff800aed9e30482a2467844cb691b17a0312ac2f7707a5bb5", kill_on_drop: false }` [INFO] [stderr] Compiling microbiorust-py v0.1.1 (/opt/rustwide/workdir) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 1.63s [INFO] running `Command { std: "docker" "inspect" "8a893e419a61948ff800aed9e30482a2467844cb691b17a0312ac2f7707a5bb5", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "8a893e419a61948ff800aed9e30482a2467844cb691b17a0312ac2f7707a5bb5", kill_on_drop: false }` [INFO] [stdout] 8a893e419a61948ff800aed9e30482a2467844cb691b17a0312ac2f7707a5bb5 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 78c2ca03e99e26db9d52cb0e8e64e061c203a718685a4ce9f9318d2a0bdfeeb5 [INFO] running `Command { std: "docker" "start" "-a" "78c2ca03e99e26db9d52cb0e8e64e061c203a718685a4ce9f9318d2a0bdfeeb5", kill_on_drop: false }` [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.16s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/microbiorust-fc47006c6bcfb63c) [INFO] [stdout] [INFO] [stdout] running 1 test [INFO] [stdout] test tests::test_functions_are_registered ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.06s [INFO] [stdout] [INFO] [stderr] Doc-tests microbiorust [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "78c2ca03e99e26db9d52cb0e8e64e061c203a718685a4ce9f9318d2a0bdfeeb5", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "78c2ca03e99e26db9d52cb0e8e64e061c203a718685a4ce9f9318d2a0bdfeeb5", kill_on_drop: false }` [INFO] [stdout] 78c2ca03e99e26db9d52cb0e8e64e061c203a718685a4ce9f9318d2a0bdfeeb5