[INFO] fetching crate gffkit 0.1.2... [INFO] testing gffkit-0.1.2 against master#ad85bc524b1ad696e42061ad8338d382dffbdbe5 for pr-146237 [INFO] extracting crate gffkit 0.1.2 into /workspace/builds/worker-7-tc1/source [INFO] started tweaking crates.io crate gffkit 0.1.2 [INFO] finished tweaking crates.io crate gffkit 0.1.2 [INFO] tweaked toml for crates.io crate gffkit 0.1.2 written to /workspace/builds/worker-7-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate gffkit 0.1.2 on toolchain ad85bc524b1ad696e42061ad8338d382dffbdbe5 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate gffkit 0.1.2 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded xz2 v0.1.7 [INFO] [stderr] Downloaded noodles-core v0.15.0 [INFO] [stderr] Downloaded noodles v0.74.0 [INFO] [stderr] Downloaded noodles-gtf v0.28.0 [INFO] [stderr] Downloaded noodles-csi v0.35.0 [INFO] [stderr] Downloaded proc-macro2 v1.0.83 [INFO] [stderr] Downloaded anstyle v1.0.7 [INFO] [stderr] Downloaded fxhash v0.2.1 [INFO] [stderr] Downloaded newtype_derive v0.1.6 [INFO] [stderr] Downloaded derive-new v0.5.9 [INFO] [stderr] Downloaded anyhow v1.0.86 [INFO] [stderr] Downloaded matrixmultiply v0.3.8 [INFO] [stderr] Downloaded statrs v0.16.0 [INFO] [stderr] Downloaded clap_builder v4.5.2 [INFO] [stderr] Downloaded safe_arch v0.7.1 [INFO] [stderr] Downloaded regex-syntax v0.8.3 [INFO] [stderr] Downloaded serde v1.0.202 [INFO] [stderr] Downloaded lzma-sys v0.1.20 [INFO] [stderr] Downloaded wide v0.7.20 [INFO] [stderr] Downloaded triple_accel v0.4.0 [INFO] [stderr] Downloaded crossbeam-channel v0.5.13 [INFO] [stderr] Downloaded clap v4.5.4 [INFO] [stderr] Downloaded regex v1.10.4 [INFO] [stderr] Downloaded bio v1.6.0 [INFO] [stderr] Downloaded noodles-bgzf v0.30.0 [INFO] [stderr] Downloaded nalgebra v0.29.0 [INFO] [stderr] Downloaded serde_derive v1.0.202 [INFO] [stderr] Downloaded syn v2.0.65 [INFO] [stderr] Downloaded bv v0.11.1 [INFO] [stderr] Downloaded csv-core v0.1.11 [INFO] [stderr] Downloaded custom_derive v0.1.7 [INFO] [stderr] Downloaded noodles-fasta v0.38.0 [INFO] [stderr] Downloaded bio-types v1.0.1 [INFO] [stderr] Downloaded feature-probe v0.1.1 [INFO] [stderr] Downloaded bytecount v0.6.8 [INFO] [stderr] Downloaded editdistancek v1.0.2 [INFO] [stderr] Downloaded bzip2-sys v0.1.11+1.0.8 [INFO] [stderr] Downloaded regex-automata v0.4.6 [INFO] [stderr] Downloaded either v1.12.0 [INFO] [stderr] Downloaded rustversion v1.0.17 [INFO] [stderr] Downloaded colorchoice v1.0.1 [INFO] [stderr] Downloaded humantime v2.1.0 [INFO] [stderr] Downloaded human-sort v0.2.2 [INFO] [stderr] Downloaded simba v0.6.0 [INFO] [stderr] Downloaded strum_macros v0.25.3 [INFO] [stderr] Downloaded anstyle-wincon v3.0.3 [INFO] [stderr] Downloaded anstream v0.6.14 [INFO] [stderr] Downloaded clap_lex v0.7.0 [INFO] [stderr] Downloaded csv v1.3.0 [INFO] [stderr] Downloaded multimap v0.9.1 [INFO] [stderr] Downloaded terminal_size v0.3.0 [INFO] [stderr] Downloaded noodles-gff v0.33.0 [INFO] [stderr] Downloaded itertools-num v0.1.3 [INFO] [stderr] Downloaded semver v0.1.20 [INFO] [stderr] Downloaded rustc_version v0.1.7 [INFO] [stderr] Downloaded nalgebra-macros v0.1.0 [INFO] [stderr] Downloaded strum v0.25.0 [INFO] [stderr] Downloaded bzip2 v0.4.4 [INFO] [stderr] Downloaded anstyle-parse v0.2.4 [INFO] [stderr] Downloaded anstyle-query v1.0.3 [INFO] [stderr] Downloaded is_terminal_polyfill v1.70.0 [INFO] [stderr] Downloaded is-terminal v0.4.12 [INFO] [stderr] Downloaded clap_derive v4.5.4 [INFO] [stderr] Downloaded cc v1.0.98 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] a2967c6a1a277ddcae2c0441d9136a89b90d9062f1f193ca9b3c5910bfb6db5f [INFO] running `Command { std: "docker" "start" "-a" "a2967c6a1a277ddcae2c0441d9136a89b90d9062f1f193ca9b3c5910bfb6db5f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "a2967c6a1a277ddcae2c0441d9136a89b90d9062f1f193ca9b3c5910bfb6db5f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "a2967c6a1a277ddcae2c0441d9136a89b90d9062f1f193ca9b3c5910bfb6db5f", kill_on_drop: false }` [INFO] [stdout] a2967c6a1a277ddcae2c0441d9136a89b90d9062f1f193ca9b3c5910bfb6db5f [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] c025a127045e5d1e0d8c4fcfc82164536712da5bda969c59f7427dbce7d9c601 [INFO] running `Command { std: "docker" "start" "-a" "c025a127045e5d1e0d8c4fcfc82164536712da5bda969c59f7427dbce7d9c601", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.83 [INFO] [stderr] Compiling unicode-ident v1.0.12 [INFO] [stderr] Compiling autocfg v1.3.0 [INFO] [stderr] Compiling libc v0.2.155 [INFO] [stderr] Compiling libm v0.2.8 [INFO] [stderr] Compiling memchr v2.7.2 [INFO] [stderr] Compiling crossbeam-utils v0.8.20 [INFO] [stderr] Compiling adler v1.0.2 [INFO] [stderr] Compiling cc v1.0.98 [INFO] [stderr] Compiling syn v1.0.109 [INFO] [stderr] Compiling pkg-config v0.3.30 [INFO] [stderr] Compiling hashbrown v0.14.5 [INFO] [stderr] Compiling equivalent v1.0.1 [INFO] [stderr] Compiling serde v1.0.202 [INFO] [stderr] Compiling crc32fast v1.4.2 [INFO] [stderr] Compiling ppv-lite86 v0.2.17 [INFO] [stderr] Compiling bit-vec v0.6.3 [INFO] [stderr] Compiling bytes v1.6.0 [INFO] [stderr] Compiling miniz_oxide v0.7.3 [INFO] [stderr] Compiling bytemuck v1.16.0 [INFO] [stderr] Compiling paste v1.0.15 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling typenum v1.17.0 [INFO] [stderr] Compiling regex-syntax v0.8.3 [INFO] [stderr] Compiling safe_arch v0.7.1 [INFO] [stderr] Compiling rawpointer v0.2.1 [INFO] [stderr] Compiling rustversion v1.0.17 [INFO] [stderr] Compiling bstr v1.9.1 [INFO] [stderr] Compiling flate2 v1.0.30 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling matrixmultiply v0.3.8 [INFO] [stderr] Compiling aho-corasick v1.1.3 [INFO] [stderr] Compiling rustix v0.38.34 [INFO] [stderr] Compiling crossbeam-channel v0.5.13 [INFO] [stderr] Compiling noodles-core v0.15.0 [INFO] [stderr] Compiling wide v0.7.20 [INFO] [stderr] Compiling quote v1.0.36 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling indexmap v2.2.6 [INFO] [stderr] Compiling thiserror v1.0.61 [INFO] [stderr] Compiling bitflags v2.5.0 [INFO] [stderr] Compiling linux-raw-sys v0.4.14 [INFO] [stderr] Compiling syn v2.0.65 [INFO] [stderr] Compiling utf8parse v0.2.1 [INFO] [stderr] Compiling noodles-bgzf v0.30.0 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Compiling anstyle-parse v0.2.4 [INFO] [stderr] Compiling getrandom v0.2.15 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling rand_core v0.6.4 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling anstyle-query v1.0.3 [INFO] [stderr] Compiling anstyle v1.0.7 [INFO] [stderr] Compiling noodles-csi v0.35.0 [INFO] [stderr] Compiling heck v0.4.1 [INFO] [stderr] Compiling is_terminal_polyfill v1.70.0 [INFO] [stderr] Compiling bzip2-sys v0.1.11+1.0.8 [INFO] [stderr] Compiling lzma-sys v0.1.20 [INFO] [stderr] Compiling num-integer v0.1.46 [INFO] [stderr] Compiling num-complex v0.4.6 [INFO] [stderr] Compiling rand_chacha v0.3.1 [INFO] [stderr] Compiling approx v0.5.1 [INFO] [stderr] Compiling colorchoice v1.0.1 [INFO] [stderr] Compiling anyhow v1.0.86 [INFO] [stderr] Compiling anstream v0.6.14 [INFO] [stderr] Compiling rand v0.8.5 [INFO] [stderr] Compiling num-rational v0.4.2 [INFO] [stderr] Compiling csv-core v0.1.11 [INFO] [stderr] Compiling ryu v1.0.18 [INFO] [stderr] Compiling regex-automata v0.4.6 [INFO] [stderr] Compiling percent-encoding v2.3.1 [INFO] [stderr] Compiling itoa v1.0.11 [INFO] [stderr] Compiling either v1.12.0 [INFO] [stderr] Compiling clap_lex v0.7.0 [INFO] [stderr] Compiling fixedbitset v0.4.2 [INFO] [stderr] Compiling noodles-gff v0.33.0 [INFO] [stderr] Compiling petgraph v0.6.5 [INFO] [stderr] Compiling ndarray v0.15.6 [INFO] [stderr] Compiling itertools v0.11.0 [INFO] [stderr] Compiling simba v0.6.0 [INFO] [stderr] Compiling terminal_size v0.3.0 [INFO] [stderr] Compiling clap_builder v4.5.2 [INFO] [stderr] Compiling noodles-gtf v0.28.0 [INFO] [stderr] Compiling itertools-num v0.1.3 [INFO] [stderr] Compiling ordered-float v3.9.2 [INFO] [stderr] Compiling noodles-fasta v0.38.0 [INFO] [stderr] Compiling is-terminal v0.4.12 [INFO] [stderr] Compiling bit-set v0.5.3 [INFO] [stderr] Compiling fxhash v0.2.1 [INFO] [stderr] Compiling iana-time-zone v0.1.60 [INFO] [stderr] Compiling rand_distr v0.4.3 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling log v0.4.21 [INFO] [stderr] Compiling triple_accel v0.4.0 [INFO] [stderr] Compiling editdistancek v1.0.2 [INFO] [stderr] Compiling humantime v2.1.0 [INFO] [stderr] Compiling bytecount v0.6.8 [INFO] [stderr] Compiling strum v0.25.0 [INFO] [stderr] Compiling termcolor v1.4.1 [INFO] [stderr] Compiling chrono v0.4.38 [INFO] [stderr] Compiling noodles v0.74.0 [INFO] [stderr] Compiling xz2 v0.1.7 [INFO] [stderr] Compiling bzip2 v0.4.4 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling human-sort v0.2.2 [INFO] [stderr] Compiling regex v1.10.4 [INFO] [stderr] Compiling env_logger v0.10.2 [INFO] [stderr] Compiling nalgebra-macros v0.1.0 [INFO] [stderr] Compiling derive-new v0.5.9 [INFO] [stderr] Compiling serde_derive v1.0.202 [INFO] [stderr] Compiling thiserror-impl v1.0.61 [INFO] [stderr] Compiling enum-map-derive v0.17.0 [INFO] [stderr] Compiling strum_macros v0.25.3 [INFO] [stderr] Compiling clap_derive v4.5.4 [INFO] [stderr] Compiling enum-map v2.7.3 [INFO] [stderr] Compiling bio-types v1.0.1 [INFO] [stderr] Compiling clap v4.5.4 [INFO] [stderr] Compiling nalgebra v0.29.0 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling csv v1.3.0 [INFO] [stderr] Compiling multimap v0.9.1 [INFO] [stderr] Compiling statrs v0.16.0 [INFO] [stderr] Compiling bio v1.6.0 [INFO] [stderr] Compiling gffkit v0.1.2 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 02s [INFO] running `Command { std: "docker" "inspect" "c025a127045e5d1e0d8c4fcfc82164536712da5bda969c59f7427dbce7d9c601", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "c025a127045e5d1e0d8c4fcfc82164536712da5bda969c59f7427dbce7d9c601", kill_on_drop: false }` [INFO] [stdout] c025a127045e5d1e0d8c4fcfc82164536712da5bda969c59f7427dbce7d9c601 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 1754960c918a3e087241bfd0a8e3d1795cdab6924278343934599bd7d35ff2ed [INFO] running `Command { std: "docker" "start" "-a" "1754960c918a3e087241bfd0a8e3d1795cdab6924278343934599bd7d35ff2ed", kill_on_drop: false }` [INFO] [stderr] Compiling gffkit v0.1.2 (/opt/rustwide/workdir) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 1.03s [INFO] running `Command { std: "docker" "inspect" "1754960c918a3e087241bfd0a8e3d1795cdab6924278343934599bd7d35ff2ed", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "1754960c918a3e087241bfd0a8e3d1795cdab6924278343934599bd7d35ff2ed", kill_on_drop: false }` [INFO] [stdout] 1754960c918a3e087241bfd0a8e3d1795cdab6924278343934599bd7d35ff2ed [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 84884b1deca2db71579c2f10aecd543fbeba6c86c660782c63f772db4bbaf11c [INFO] running `Command { std: "docker" "start" "-a" "84884b1deca2db71579c2f10aecd543fbeba6c86c660782c63f772db4bbaf11c", kill_on_drop: false }` [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.15s [INFO] [stderr] Running unittests src/main.rs (/opt/rustwide/target/debug/deps/gffkit-9d69e774d485c07a) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "84884b1deca2db71579c2f10aecd543fbeba6c86c660782c63f772db4bbaf11c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "84884b1deca2db71579c2f10aecd543fbeba6c86c660782c63f772db4bbaf11c", kill_on_drop: false }` [INFO] [stdout] 84884b1deca2db71579c2f10aecd543fbeba6c86c660782c63f772db4bbaf11c