[INFO] cloning repository https://github.com/zietzm/igwas [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/zietzm/igwas" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fzietzm%2Figwas", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fzietzm%2Figwas'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] dc1127048f3c01f82f6aaf368e32dafe48abff4f [INFO] testing zietzm/igwas against master#ad85bc524b1ad696e42061ad8338d382dffbdbe5 for pr-146237 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fzietzm%2Figwas" "/workspace/builds/worker-1-tc1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-1-tc1/source'... [INFO] [stderr] done. [INFO] started tweaking git repo https://github.com/zietzm/igwas [INFO] finished tweaking git repo https://github.com/zietzm/igwas [INFO] tweaked toml for git repo https://github.com/zietzm/igwas written to /workspace/builds/worker-1-tc1/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/zietzm/igwas on toolchain ad85bc524b1ad696e42061ad8338d382dffbdbe5 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/zietzm/igwas already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Updating crates.io index [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded env_logger v0.10.1 [INFO] [stderr] Downloaded is-terminal v0.4.10 [INFO] [stderr] Downloaded csv-sniffer v0.3.1 [INFO] [stderr] Downloaded clap v4.4.14 [INFO] [stderr] Downloaded statrs v0.16.0 [INFO] [stderr] Downloaded clap_builder v4.4.14 [INFO] [stderr] Downloaded nalgebra v0.32.3 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 41b8193aad76279d957e9026523b46458948471542c7280a0f624516d53a46c4 [INFO] running `Command { std: "docker" "start" "-a" "41b8193aad76279d957e9026523b46458948471542c7280a0f624516d53a46c4", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "41b8193aad76279d957e9026523b46458948471542c7280a0f624516d53a46c4", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "41b8193aad76279d957e9026523b46458948471542c7280a0f624516d53a46c4", kill_on_drop: false }` [INFO] [stdout] 41b8193aad76279d957e9026523b46458948471542c7280a0f624516d53a46c4 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] fb46e90d142a10312a6d92deb66909f2ce3e897bfba711794f22404fc10e6b23 [INFO] running `Command { std: "docker" "start" "-a" "fb46e90d142a10312a6d92deb66909f2ce3e897bfba711794f22404fc10e6b23", kill_on_drop: false }` [INFO] [stderr] Compiling libm v0.2.8 [INFO] [stderr] Compiling num-traits v0.2.17 [INFO] [stderr] Compiling bytemuck v1.14.0 [INFO] [stderr] Compiling matrixmultiply v0.3.8 [INFO] [stderr] Compiling num-rational v0.4.1 [INFO] [stderr] Compiling libc v0.2.152 [INFO] [stderr] Compiling aho-corasick v1.1.2 [INFO] [stderr] Compiling rustix v0.38.28 [INFO] [stderr] Compiling serde v1.0.195 [INFO] [stderr] Compiling rayon-core v1.12.0 [INFO] [stderr] Compiling syn v1.0.109 [INFO] [stderr] Compiling anstyle v1.0.4 [INFO] [stderr] Compiling zstd-safe v7.0.0 [INFO] [stderr] Compiling csv-core v0.1.11 [INFO] [stderr] Compiling clap_lex v0.6.0 [INFO] [stderr] Compiling anyhow v1.0.79 [INFO] [stderr] Compiling safe_arch v0.7.1 [INFO] [stderr] Compiling anstream v0.6.5 [INFO] [stderr] Compiling either v1.9.0 [INFO] [stderr] Compiling clap_derive v4.4.7 [INFO] [stderr] Compiling termcolor v1.4.0 [INFO] [stderr] Compiling crossbeam-channel v0.5.11 [INFO] [stderr] Compiling clap_builder v4.4.14 [INFO] [stderr] Compiling wide v0.7.13 [INFO] [stderr] Compiling rayon v1.8.0 [INFO] [stderr] Compiling jobserver v0.1.27 [INFO] [stderr] Compiling num-complex v0.4.4 [INFO] [stderr] Compiling approx v0.5.1 [INFO] [stderr] Compiling num-integer v0.1.45 [INFO] [stderr] Compiling getrandom v0.2.11 [INFO] [stderr] Compiling cc v1.0.83 [INFO] [stderr] Compiling is-terminal v0.4.10 [INFO] [stderr] Compiling rand_core v0.6.4 [INFO] [stderr] Compiling regex-automata v0.4.3 [INFO] [stderr] Compiling rand_chacha v0.3.1 [INFO] [stderr] Compiling rand v0.8.5 [INFO] [stderr] Compiling simba v0.6.0 [INFO] [stderr] Compiling simba v0.8.1 [INFO] [stderr] Compiling rand_distr v0.4.3 [INFO] [stderr] Compiling zstd-sys v2.0.9+zstd.1.5.5 [INFO] [stderr] Compiling nalgebra-macros v0.1.0 [INFO] [stderr] Compiling nalgebra-macros v0.2.1 [INFO] [stderr] Compiling clap v4.4.14 [INFO] [stderr] Compiling csv v1.3.0 [INFO] [stderr] Compiling regex v1.10.2 [INFO] [stderr] Compiling env_logger v0.10.1 [INFO] [stderr] Compiling csv-sniffer v0.3.1 [INFO] [stderr] Compiling zstd v0.13.0 [INFO] [stderr] Compiling nalgebra v0.29.0 [INFO] [stderr] Compiling nalgebra v0.32.3 [INFO] [stderr] Compiling statrs v0.16.0 [INFO] [stderr] Compiling igwas v1.0.3 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 51.86s [INFO] running `Command { std: "docker" "inspect" "fb46e90d142a10312a6d92deb66909f2ce3e897bfba711794f22404fc10e6b23", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "fb46e90d142a10312a6d92deb66909f2ce3e897bfba711794f22404fc10e6b23", kill_on_drop: false }` [INFO] [stdout] fb46e90d142a10312a6d92deb66909f2ce3e897bfba711794f22404fc10e6b23 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] f39ecf7f604d955083e0b22936c05aa7d0c91b4820a9b7c19b60e07cfb81537d [INFO] running `Command { std: "docker" "start" "-a" "f39ecf7f604d955083e0b22936c05aa7d0c91b4820a9b7c19b60e07cfb81537d", kill_on_drop: false }` [INFO] [stderr] Compiling regex-automata v0.4.3 [INFO] [stderr] Compiling getrandom v0.2.11 [INFO] [stderr] Compiling jobserver v0.1.27 [INFO] [stderr] Compiling is-terminal v0.4.10 [INFO] [stderr] Compiling rayon v1.8.0 [INFO] [stderr] Compiling predicates-core v1.0.6 [INFO] [stderr] Compiling itertools v0.11.0 [INFO] [stderr] Compiling csv v1.3.0 [INFO] [stderr] Compiling termtree v0.4.1 [INFO] [stderr] Compiling difflib v0.4.0 [INFO] [stderr] Compiling wait-timeout v0.2.0 [INFO] [stderr] Compiling tempfile v3.9.0 [INFO] [stderr] Compiling predicates-tree v1.0.9 [INFO] [stderr] Compiling cc v1.0.83 [INFO] [stderr] Compiling rand_core v0.6.4 [INFO] [stderr] Compiling rand_chacha v0.3.1 [INFO] [stderr] Compiling rand v0.8.5 [INFO] [stderr] Compiling rand_distr v0.4.3 [INFO] [stderr] Compiling zstd-sys v2.0.9+zstd.1.5.5 [INFO] [stderr] Compiling nalgebra v0.29.0 [INFO] [stderr] Compiling predicates v3.0.4 [INFO] [stderr] Compiling nalgebra v0.32.3 [INFO] [stderr] Compiling regex v1.10.2 [INFO] [stderr] Compiling bstr v1.9.0 [INFO] [stderr] Compiling csv-sniffer v0.3.1 [INFO] [stderr] Compiling env_logger v0.10.1 [INFO] [stderr] Compiling assert_cmd v2.0.12 [INFO] [stderr] Compiling zstd-safe v7.0.0 [INFO] [stderr] Compiling zstd v0.13.0 [INFO] [stderr] Compiling statrs v0.16.0 [INFO] [stderr] Compiling igwas v1.0.3 (/opt/rustwide/workdir) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 28.64s [INFO] running `Command { std: "docker" "inspect" "f39ecf7f604d955083e0b22936c05aa7d0c91b4820a9b7c19b60e07cfb81537d", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "f39ecf7f604d955083e0b22936c05aa7d0c91b4820a9b7c19b60e07cfb81537d", kill_on_drop: false }` [INFO] [stdout] f39ecf7f604d955083e0b22936c05aa7d0c91b4820a9b7c19b60e07cfb81537d [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 4f0337dbe0565551d27633128078772a5e014c7aeda9841364322ce62c7bad49 [INFO] running `Command { std: "docker" "start" "-a" "4f0337dbe0565551d27633128078772a5e014c7aeda9841364322ce62c7bad49", kill_on_drop: false }` [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.18s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/igwas-4f9c17b44023b6de) [INFO] [stderr] Running unittests src/main.rs (/opt/rustwide/target/debug/deps/igwas-e6b876cf9d1dc2fd) [INFO] [stderr] Running tests/integration_test.rs (/opt/rustwide/target/debug/deps/integration_test-3c698cd803ee6dc1) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 10 tests [INFO] [stdout] test cli_help ... ok [INFO] [stdout] test read_gwas_results_compressed ... ok [INFO] [stdout] test read_gwas_results ... ok [INFO] [stdout] test read_projection_matrix ... ok [INFO] [stdout] test test_run_cli_compressed ... ok [INFO] [stdout] test cli_full_compressed ... ok [INFO] [stdout] test run_fn_compressed ... ok [INFO] [stdout] test test_run_cli ... ok [INFO] [stdout] test run_fn ... ok [INFO] [stdout] test cli_full ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 10 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 40.18s [INFO] [stdout] [INFO] [stderr] Running tests/utils.rs (/opt/rustwide/target/debug/deps/utils-57561b59950b7dba) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Doc-tests igwas [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "4f0337dbe0565551d27633128078772a5e014c7aeda9841364322ce62c7bad49", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "4f0337dbe0565551d27633128078772a5e014c7aeda9841364322ce62c7bad49", kill_on_drop: false }` [INFO] [stdout] 4f0337dbe0565551d27633128078772a5e014c7aeda9841364322ce62c7bad49