[INFO] cloning repository https://github.com/pombase/pombase-chado-json
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/pombase/pombase-chado-json" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fpombase%2Fpombase-chado-json", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fpombase%2Fpombase-chado-json'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 6b5cf89014de92c30cf7f00bc9999847d74c8862
[INFO] testing pombase/pombase-chado-json against master#ad85bc524b1ad696e42061ad8338d382dffbdbe5 for pr-146237
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fpombase%2Fpombase-chado-json" "/workspace/builds/worker-6-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-6-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/pombase/pombase-chado-json
[INFO] finished tweaking git repo https://github.com/pombase/pombase-chado-json
[INFO] tweaked toml for git repo https://github.com/pombase/pombase-chado-json written to /workspace/builds/worker-6-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/pombase/pombase-chado-json on toolchain ad85bc524b1ad696e42061ad8338d382dffbdbe5
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/pombase/pombase-chado-json already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]     Updating git repository `https://github.com/pombase/pombase-gocam-process.git`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
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[INFO] [stderr]   Downloaded chrono v0.4.42
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 774ce71a88db912fa727836bf1b19065c254691dc3e4c37457d3728555fc2be0
[INFO] running `Command { std: "docker" "start" "-a" "774ce71a88db912fa727836bf1b19065c254691dc3e4c37457d3728555fc2be0", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "774ce71a88db912fa727836bf1b19065c254691dc3e4c37457d3728555fc2be0", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "774ce71a88db912fa727836bf1b19065c254691dc3e4c37457d3728555fc2be0", kill_on_drop: false }`
[INFO] [stdout] 774ce71a88db912fa727836bf1b19065c254691dc3e4c37457d3728555fc2be0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 3be0fa2867668e3a0c35128be1f39520850206aafe7f651a52fd759e2180fc5a
[INFO] running `Command { std: "docker" "start" "-a" "3be0fa2867668e3a0c35128be1f39520850206aafe7f651a52fd759e2180fc5a", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.101
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[INFO] [stderr]    Compiling darling_macro v0.20.11
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[INFO] [stderr]    Compiling serde_with v3.14.0
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[INFO] [stderr]    Compiling hyper-util v0.1.16
[INFO] [stderr]    Compiling postgres-types v0.2.9
[INFO] [stderr]    Compiling tokio-postgres v0.7.13
[INFO] [stderr]    Compiling axum v0.8.4
[INFO] [stderr]    Compiling reqwest v0.12.23
[INFO] [stderr]    Compiling pombase-gocam v0.95.0
[INFO] [stderr]    Compiling rusqlite v0.37.0
[INFO] [stderr]    Compiling deadpool-postgres v0.14.1
[INFO] [stderr]    Compiling pombase-gocam-process v0.111.0 (https://github.com/pombase/pombase-gocam-process.git#d2e79a9e)
[INFO] [stderr]    Compiling axum-extra v0.10.1
[INFO] [stderr]    Compiling axum-range v0.5.0
[INFO] [stderr]    Compiling pombase-chado-json v219.51.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 42s
[INFO] running `Command { std: "docker" "inspect" "3be0fa2867668e3a0c35128be1f39520850206aafe7f651a52fd759e2180fc5a", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "3be0fa2867668e3a0c35128be1f39520850206aafe7f651a52fd759e2180fc5a", kill_on_drop: false }`
[INFO] [stdout] 3be0fa2867668e3a0c35128be1f39520850206aafe7f651a52fd759e2180fc5a
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] ef4597cf1799cd084f6860439e9a4d4c547ba55cb459bc0fa7b8899310f92fac
[INFO] running `Command { std: "docker" "start" "-a" "ef4597cf1799cd084f6860439e9a4d4c547ba55cb459bc0fa7b8899310f92fac", kill_on_drop: false }`
[INFO] [stderr]    Compiling pombase-chado-json v219.51.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 17.99s
[INFO] running `Command { std: "docker" "inspect" "ef4597cf1799cd084f6860439e9a4d4c547ba55cb459bc0fa7b8899310f92fac", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "ef4597cf1799cd084f6860439e9a4d4c547ba55cb459bc0fa7b8899310f92fac", kill_on_drop: false }`
[INFO] [stdout] ef4597cf1799cd084f6860439e9a4d4c547ba55cb459bc0fa7b8899310f92fac
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 847108bbcb649fd03039f7d86d2c4cec9df1782a793eb36361b0756a398580f1
[INFO] running `Command { std: "docker" "start" "-a" "847108bbcb649fd03039f7d86d2c4cec9df1782a793eb36361b0756a398580f1", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.28s
[INFO] [stderr]      Running unittests src/pombase/lib.rs (/opt/rustwide/target/debug/deps/pombase-745d0813b24e61a2)
[INFO] [stdout] 
[INFO] [stdout] running 6 tests
[INFO] [stdout] test bio::util::test_format_fasta ... ok
[INFO] [stdout] test bio::util::test_format_gff ... ok
[INFO] [stdout] test web::util::test_remove_first_string ... ok
[INFO] [stdout] test web::vec_set::test_contains_superset ... ok
[INFO] [stdout] test web::vec_set::test_insert ... ok
[INFO] [stdout] test bio::util::test_read_seq ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 6 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/bin/pombase-chado-json.rs (/opt/rustwide/target/debug/deps/pombase_chado_json-161ce4c0b8ed6d4f)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/bin/pombase-chado-load.rs (/opt/rustwide/target/debug/deps/pombase_chado_load-29b2a1992789a56b)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/bin/pombase-create-annotations.rs (/opt/rustwide/target/debug/deps/pombase_create_annotations-22e5d0b4e52cd973)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/bin/pombase-server.rs (/opt/rustwide/target/debug/deps/pombase_server-7f0daa0f9412df8c)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/test_data_build.rs (/opt/rustwide/target/debug/deps/test_data_build-b14e854d15492853)
[INFO] [stdout] 
[INFO] [stdout] running 7 tests
[INFO] [stdout] test test_compare_ext_part_with_config ... ok
[INFO] [stdout] test test_remove_redundant_summaries ... ok
[INFO] [stdout] test test_summary_row_equals ... ok
[INFO] [stdout] test test_remove_redundant_summary_rows ... ok
[INFO] [stdout] test test_merge_ext_part_ranges ... ok
[INFO] [stdout] test test_collect_ext_summary_genes ... ok
[INFO] [stdout] test test_cmp_ont_annotation_detail ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 7 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.04s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/test_db_json.rs (/opt/rustwide/target/debug/deps/test_db_json-31cf390ff489348a)
[INFO] [stdout] 
[INFO] [stdout] running 9 tests
[INFO] [stdout] test test_collect_duplicated_relations ... ok
[INFO] [stdout] test test_remove_first_u32 ... ok
[INFO] [stdout] test test_term_gene_count ... ok
[INFO] [stdout] test test_locations ... ok
[INFO] [stdout] test test_terms ... ok
[INFO] [stdout] test test_gene_details ... ok
[INFO] [stdout] test test_genotype_annotation ... ok
[INFO] [stdout] test test_make_publication_short ... ok
[INFO] [stdout] test test_gene_with ... ok
[INFO] [stderr]      Running tests/test_query.rs (/opt/rustwide/target/debug/deps/test_query-a6855ccaa6998755)
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 9 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.16s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 8 tests
[INFO] [stdout] test test_gene_subset_wildcard ... ok
[INFO] [stdout] test test_termid ... ok
[INFO] [stdout] test test_gene_subset ... ok
[INFO] [stdout] test test_gene_subset_invert ... ok
[INFO] [stderr]      Running tests/tests.rs (/opt/rustwide/target/debug/deps/tests-730a202ad687f6cf)
[INFO] [stdout] test test_gene_gaf ... ok
[INFO] [stdout] test test_output_options ... ok
[INFO] [stdout] test test_gene_subset_not_wildcard ... ok
[INFO] [stdout] test test_and_or_not ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 8 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.07s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests pombase
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "847108bbcb649fd03039f7d86d2c4cec9df1782a793eb36361b0756a398580f1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "847108bbcb649fd03039f7d86d2c4cec9df1782a793eb36361b0756a398580f1", kill_on_drop: false }`
[INFO] [stdout] 847108bbcb649fd03039f7d86d2c4cec9df1782a793eb36361b0756a398580f1