[INFO] cloning repository https://github.com/natir/vcf2parquet
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/natir/vcf2parquet" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fnatir%2Fvcf2parquet", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fnatir%2Fvcf2parquet'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 66d63d31e88f65732ad7b331857f0c29171000c1
[INFO] testing natir/vcf2parquet against master#ad85bc524b1ad696e42061ad8338d382dffbdbe5 for pr-146237
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fnatir%2Fvcf2parquet" "/workspace/builds/worker-3-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-3-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/natir/vcf2parquet
[INFO] finished tweaking git repo https://github.com/natir/vcf2parquet
[INFO] tweaked toml for git repo https://github.com/natir/vcf2parquet written to /workspace/builds/worker-3-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/natir/vcf2parquet on toolchain ad85bc524b1ad696e42061ad8338d382dffbdbe5
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/natir/vcf2parquet already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded arrow-data v53.3.0
[INFO] [stderr]   Downloaded noodles-tabix v0.36.0
[INFO] [stderr]   Downloaded noodles-core v0.14.0
[INFO] [stderr]   Downloaded lexical-core v1.0.2
[INFO] [stderr]   Downloaded noodles v0.64.0
[INFO] [stderr]   Downloaded arrow-ipc v53.3.0
[INFO] [stderr]   Downloaded arrow-row v53.3.0
[INFO] [stderr]   Downloaded arrow-arith v53.3.0
[INFO] [stderr]   Downloaded lexical-write-integer v1.0.2
[INFO] [stderr]   Downloaded arrow v53.3.0
[INFO] [stderr]   Downloaded noodles-vcf v0.49.0
[INFO] [stderr]   Downloaded lexical-write-float v1.0.2
[INFO] [stderr]   Downloaded lexical-util v1.0.3
[INFO] [stderr]   Downloaded arrow-cast v53.3.0
[INFO] [stderr]   Downloaded arrow-buffer v53.3.0
[INFO] [stderr]   Downloaded lexical-parse-float v1.0.2
[INFO] [stderr]   Downloaded arrow-array v53.3.0
[INFO] [stderr]   Downloaded arrow-ord v53.3.0
[INFO] [stderr]   Downloaded arrow-string v53.3.0
[INFO] [stderr]   Downloaded liblzma v0.3.5
[INFO] [stderr]   Downloaded niffler v2.6.0
[INFO] [stderr]   Downloaded noodles-csi v0.30.0
[INFO] [stderr]   Downloaded lexical-parse-integer v1.0.2
[INFO] [stderr]   Downloaded flatbuffers v24.3.25
[INFO] [stderr]   Downloaded arrow-schema v53.3.0
[INFO] [stderr]   Downloaded arrow-select v53.3.0
[INFO] [stderr]   Downloaded bgzip v0.3.1
[INFO] [stderr]   Downloaded noodles-bgzf v0.26.0
[INFO] [stderr]   Downloaded parquet v53.3.0
[INFO] [stderr]   Downloaded liblzma-sys v0.3.9
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 0f54860394f482f2d61736a89196087bda709919665791b41d955d82c847d575
[INFO] running `Command { std: "docker" "start" "-a" "0f54860394f482f2d61736a89196087bda709919665791b41d955d82c847d575", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "0f54860394f482f2d61736a89196087bda709919665791b41d955d82c847d575", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "0f54860394f482f2d61736a89196087bda709919665791b41d955d82c847d575", kill_on_drop: false }`
[INFO] [stdout] 0f54860394f482f2d61736a89196087bda709919665791b41d955d82c847d575
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] cd184e676301c826fc39c3395e59812e7b03b4d4ca416f445269b61f5401c878
[INFO] running `Command { std: "docker" "start" "-a" "cd184e676301c826fc39c3395e59812e7b03b4d4ca416f445269b61f5401c878", kill_on_drop: false }`
[INFO] [stderr]    Compiling hashbrown v0.15.2
[INFO] [stderr]    Compiling crossbeam-utils v0.8.20
[INFO] [stderr]    Compiling arrow-schema v53.3.0
[INFO] [stderr]    Compiling once_cell v1.20.2
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]    Compiling ahash v0.8.11
[INFO] [stderr]    Compiling lexical-util v1.0.3
[INFO] [stderr]    Compiling jobserver v0.1.32
[INFO] [stderr]    Compiling getrandom v0.2.15
[INFO] [stderr]    Compiling miniz_oxide v0.8.0
[INFO] [stderr]    Compiling zstd-safe v7.2.1
[INFO] [stderr]    Compiling regex-syntax v0.8.5
[INFO] [stderr]    Compiling alloc-no-stdlib v2.0.4
[INFO] [stderr]    Compiling noodles-core v0.14.0
[INFO] [stderr]    Compiling syn v2.0.90
[INFO] [stderr]    Compiling flatbuffers v24.3.25
[INFO] [stderr]    Compiling bit-vec v0.6.3
[INFO] [stderr]    Compiling alloc-stdlib v0.2.2
[INFO] [stderr]    Compiling snap v1.1.1
[INFO] [stderr]    Compiling twox-hash v1.6.3
[INFO] [stderr]    Compiling integer-encoding v3.0.4
[INFO] [stderr]    Compiling cc v1.2.2
[INFO] [stderr]    Compiling brotli-decompressor v4.0.1
[INFO] [stderr]    Compiling thiserror v2.0.4
[INFO] [stderr]    Compiling clap_builder v4.5.23
[INFO] [stderr]    Compiling lz4_flex v0.11.3
[INFO] [stderr]    Compiling seq-macro v0.3.5
[INFO] [stderr]    Compiling either v1.13.0
[INFO] [stderr]    Compiling lexical-parse-integer v1.0.2
[INFO] [stderr]    Compiling lexical-write-integer v1.0.2
[INFO] [stderr]    Compiling flate2 v1.0.35
[INFO] [stderr]    Compiling lexical-write-float v1.0.2
[INFO] [stderr]    Compiling indexmap v2.7.0
[INFO] [stderr]    Compiling crossbeam-channel v0.5.13
[INFO] [stderr]    Compiling crossbeam-epoch v0.9.18
[INFO] [stderr]    Compiling rustc-hash v2.1.0
[INFO] [stderr]    Compiling lexical-parse-float v1.0.2
[INFO] [stderr]    Compiling crossbeam-deque v0.8.5
[INFO] [stderr]    Compiling num-integer v0.1.46
[INFO] [stderr]    Compiling num-complex v0.4.6
[INFO] [stderr]    Compiling half v2.4.1
[INFO] [stderr]    Compiling chrono v0.4.38
[INFO] [stderr]    Compiling atoi v2.0.0
[INFO] [stderr]    Compiling ordered-float v2.10.1
[INFO] [stderr]    Compiling rayon-core v1.12.1
[INFO] [stderr]    Compiling noodles-bgzf v0.26.0
[INFO] [stderr]    Compiling lexical-core v1.0.2
[INFO] [stderr]    Compiling num-bigint v0.4.6
[INFO] [stderr]    Compiling num-iter v0.1.45
[INFO] [stderr]    Compiling brotli v7.0.0
[INFO] [stderr]    Compiling zstd-sys v2.0.13+zstd.1.5.6
[INFO] [stderr]    Compiling bzip2-sys v0.1.11+1.0.8
[INFO] [stderr]    Compiling liblzma-sys v0.3.9
[INFO] [stderr]    Compiling thrift v0.17.0
[INFO] [stderr]    Compiling noodles-csi v0.30.0
[INFO] [stderr]    Compiling rayon v1.10.0
[INFO] [stderr]    Compiling regex-automata v0.4.9
[INFO] [stderr]    Compiling noodles-tabix v0.36.0
[INFO] [stderr]    Compiling bzip2 v0.4.4
[INFO] [stderr]    Compiling noodles-vcf v0.49.0
[INFO] [stderr]    Compiling num-rational v0.4.2
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling clap_derive v4.5.18
[INFO] [stderr]    Compiling thiserror-impl v2.0.4
[INFO] [stderr]    Compiling num v0.4.3
[INFO] [stderr]    Compiling arrow-buffer v53.3.0
[INFO] [stderr]    Compiling arrow-data v53.3.0
[INFO] [stderr]    Compiling thiserror v1.0.69
[INFO] [stderr]    Compiling bgzip v0.3.1
[INFO] [stderr]    Compiling arrow-array v53.3.0
[INFO] [stderr]    Compiling regex v1.11.1
[INFO] [stderr]    Compiling noodles v0.64.0
[INFO] [stderr]    Compiling liblzma v0.3.5
[INFO] [stderr]    Compiling clap v4.5.23
[INFO] [stderr]    Compiling arrow-select v53.3.0
[INFO] [stderr]    Compiling arrow-row v53.3.0
[INFO] [stderr]    Compiling arrow-arith v53.3.0
[INFO] [stderr]    Compiling zstd v0.13.2
[INFO] [stderr]    Compiling niffler v2.6.0
[INFO] [stderr]    Compiling arrow-cast v53.3.0
[INFO] [stderr]    Compiling arrow-ord v53.3.0
[INFO] [stderr]    Compiling arrow-string v53.3.0
[INFO] [stderr]    Compiling arrow-ipc v53.3.0
[INFO] [stderr]    Compiling arrow v53.3.0
[INFO] [stderr]    Compiling parquet v53.3.0
[INFO] [stderr]    Compiling vcf2parquet v0.6.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 15s
[INFO] running `Command { std: "docker" "inspect" "cd184e676301c826fc39c3395e59812e7b03b4d4ca416f445269b61f5401c878", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "cd184e676301c826fc39c3395e59812e7b03b4d4ca416f445269b61f5401c878", kill_on_drop: false }`
[INFO] [stdout] cd184e676301c826fc39c3395e59812e7b03b4d4ca416f445269b61f5401c878
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] f83bd947fe4d5f661e30bc08d4f97df59959bf9ea0e38b44ecf3e863b3f1b19c
[INFO] running `Command { std: "docker" "start" "-a" "f83bd947fe4d5f661e30bc08d4f97df59959bf9ea0e38b44ecf3e863b3f1b19c", kill_on_drop: false }`
[INFO] [stderr]    Compiling once_cell v1.20.2
[INFO] [stderr]    Compiling regex-automata v0.4.9
[INFO] [stderr]    Compiling rustix v0.38.41
[INFO] [stderr]    Compiling predicates-core v1.0.8
[INFO] [stderr]    Compiling doc-comment v0.3.3
[INFO] [stderr]    Compiling termtree v0.4.1
[INFO] [stderr]    Compiling assert_cmd v2.0.16
[INFO] [stderr]    Compiling difflib v0.4.0
[INFO] [stderr]    Compiling wait-timeout v0.2.0
[INFO] [stderr]    Compiling fastrand v2.2.0
[INFO] [stderr]    Compiling ahash v0.8.11
[INFO] [stderr]    Compiling predicates-tree v1.0.11
[INFO] [stderr]    Compiling arrow-array v53.3.0
[INFO] [stderr]    Compiling predicates v3.1.2
[INFO] [stderr]    Compiling tempfile v3.14.0
[INFO] [stderr]    Compiling arrow-select v53.3.0
[INFO] [stderr]    Compiling arrow-row v53.3.0
[INFO] [stderr]    Compiling arrow-arith v53.3.0
[INFO] [stderr]    Compiling regex v1.11.1
[INFO] [stderr]    Compiling bstr v1.11.0
[INFO] [stderr]    Compiling arrow-cast v53.3.0
[INFO] [stderr]    Compiling arrow-string v53.3.0
[INFO] [stderr]    Compiling arrow-ord v53.3.0
[INFO] [stderr]    Compiling arrow-ipc v53.3.0
[INFO] [stderr]    Compiling arrow v53.3.0
[INFO] [stderr]    Compiling parquet v53.3.0
[INFO] [stderr]    Compiling vcf2parquet v0.6.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 39.94s
[INFO] running `Command { std: "docker" "inspect" "f83bd947fe4d5f661e30bc08d4f97df59959bf9ea0e38b44ecf3e863b3f1b19c", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "f83bd947fe4d5f661e30bc08d4f97df59959bf9ea0e38b44ecf3e863b3f1b19c", kill_on_drop: false }`
[INFO] [stdout] f83bd947fe4d5f661e30bc08d4f97df59959bf9ea0e38b44ecf3e863b3f1b19c
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] dd4287894f04c421c7b7b336f37109006f7f1f773947453413f7d552fe1f2826
[INFO] running `Command { std: "docker" "start" "-a" "dd4287894f04c421c7b7b336f37109006f7f1f773947453413f7d552fe1f2826", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.22s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/vcf2parquet-52514e6d5a9f1028)
[INFO] [stdout] 
[INFO] [stdout] running 11 tests
[INFO] [stdout] test cli::tests::basic_value ... ok
[INFO] [stdout] test cli::tests::compression ... ok
[INFO] [stdout] test schema::tests::mini_cols ... ok
[INFO] [stdout] test tests::not_a_vcf ... ok
[INFO] [stdout] test schema::tests::genotype_cols ... ok
[INFO] [stdout] test schema::tests::all_cols ... ok
[INFO] [stdout] test schema::tests::info_cols ... ok
[INFO] [stdout] test name2data::tests::add_record ... ok
[INFO] [stdout] test name2data::tests::init ... ok
[INFO] [stdout] test tests::convert_positives ... ok
[INFO] [stderr]      Running unittests src/bin/vcf2parquet.rs (/opt/rustwide/target/debug/deps/vcf2parquet-2333fcf3b9e86656)
[INFO] [stdout] test tests::multi_positives ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 11 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.07s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/functional.rs (/opt/rustwide/target/debug/deps/functional-db1192386a7af8c5)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 4 tests
[INFO] [stdout] test help ... ok
[INFO] [stdout] test convert ... ok
[INFO] [stdout] test split ... ok
[INFO] [stderr]    Doc-tests vcf2parquet
[INFO] [stdout] test convert_v1 ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 4 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.10s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "dd4287894f04c421c7b7b336f37109006f7f1f773947453413f7d552fe1f2826", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "dd4287894f04c421c7b7b336f37109006f7f1f773947453413f7d552fe1f2826", kill_on_drop: false }`
[INFO] [stdout] dd4287894f04c421c7b7b336f37109006f7f1f773947453413f7d552fe1f2826