[INFO] cloning repository https://github.com/lokxii/biosim
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/lokxii/biosim" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Flokxii%2Fbiosim", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Flokxii%2Fbiosim'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] a2340ccb4d7261b4fd5c20b5c4b42b0e80d0b1b6
[INFO] testing lokxii/biosim against master#ad85bc524b1ad696e42061ad8338d382dffbdbe5 for pr-146237
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Flokxii%2Fbiosim" "/workspace/builds/worker-4-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-4-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/lokxii/biosim
[INFO] finished tweaking git repo https://github.com/lokxii/biosim
[INFO] tweaked toml for git repo https://github.com/lokxii/biosim written to /workspace/builds/worker-4-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/lokxii/biosim on toolchain ad85bc524b1ad696e42061ad8338d382dffbdbe5
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/lokxii/biosim already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Updating git repository `https://github.com/huggingface/candle.git`
[INFO] [stderr]     Updating git submodule `https://github.com/NVIDIA/cutlass.git`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]     Updating git repository `https://github.com/raylib-rs/raylib-rs.git`
[INFO] [stderr]     Updating git submodule `https://github.com/raylib-extras/rlImGui/`
[INFO] [stderr]     Updating git submodule `https://github.com/raysan5/raylib`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded gemm-c64 v0.17.1
[INFO] [stderr]   Downloaded reborrow v0.5.5
[INFO] [stderr]   Downloaded seq-macro v0.3.6
[INFO] [stderr]   Downloaded chlorine v1.0.13
[INFO] [stderr]   Downloaded gemm-c32 v0.17.1
[INFO] [stderr]   Downloaded enum-iterator v2.1.0
[INFO] [stderr]   Downloaded prettyplease v0.2.32
[INFO] [stderr]   Downloaded gemm-f64 v0.17.1
[INFO] [stderr]   Downloaded gemm v0.17.1
[INFO] [stderr]   Downloaded gemm-f32 v0.17.1
[INFO] [stderr]   Downloaded sysctl v0.5.5
[INFO] [stderr]   Downloaded dyn-stack v0.10.0
[INFO] [stderr]   Downloaded gemm-f16 v0.17.1
[INFO] [stderr]   Downloaded gemm-c64 v0.18.2
[INFO] [stderr]   Downloaded gemm-f32 v0.18.2
[INFO] [stderr]   Downloaded gemm-common v0.17.1
[INFO] [stderr]   Downloaded gemm-f16 v0.18.2
[INFO] [stderr]   Downloaded ug v0.4.0
[INFO] [stderr]   Downloaded imgui v0.12.0
[INFO] [stderr]   Downloaded cc v1.2.24
[INFO] [stderr]   Downloaded gemm v0.18.2
[INFO] [stderr]   Downloaded gemm-common v0.18.2
[INFO] [stderr]   Downloaded safetensors v0.4.5
[INFO] [stderr]   Downloaded winnow v0.7.10
[INFO] [stderr]   Downloaded toml_edit v0.22.26
[INFO] [stderr]   Downloaded pulp v0.18.22
[INFO] [stderr]   Downloaded dyn-stack v0.13.0
[INFO] [stderr]   Downloaded rand_distr v0.5.1
[INFO] [stderr]   Downloaded derive_arbitrary v1.4.1
[INFO] [stderr]   Downloaded pulp v0.21.5
[INFO] [stderr]   Downloaded sysctl v0.6.0
[INFO] [stderr]   Downloaded gemm-f64 v0.18.2
[INFO] [stderr]   Downloaded enum-iterator-derive v1.4.0
[INFO] [stderr]   Downloaded gemm-c32 v0.18.2
[INFO] [stderr]   Downloaded zip v1.1.4
[INFO] [stderr]   Downloaded imgui-sys v0.12.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] f8cc7edeb86853ca16e681f281593e6e0f9af6b17310a70b8977f541ba6ef138
[INFO] running `Command { std: "docker" "start" "-a" "f8cc7edeb86853ca16e681f281593e6e0f9af6b17310a70b8977f541ba6ef138", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "f8cc7edeb86853ca16e681f281593e6e0f9af6b17310a70b8977f541ba6ef138", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "f8cc7edeb86853ca16e681f281593e6e0f9af6b17310a70b8977f541ba6ef138", kill_on_drop: false }`
[INFO] [stdout] f8cc7edeb86853ca16e681f281593e6e0f9af6b17310a70b8977f541ba6ef138
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 9c0efc9720ba720bd8bca2915f46ffcde1a256db426fc349cd649f0264acb2f4
[INFO] running `Command { std: "docker" "start" "-a" "9c0efc9720ba720bd8bca2915f46ffcde1a256db426fc349cd649f0264acb2f4", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.172
[INFO] [stderr]    Compiling autocfg v1.4.0
[INFO] [stderr]    Compiling getrandom v0.3.3
[INFO] [stderr]    Compiling zerocopy v0.8.25
[INFO] [stderr]    Compiling either v1.15.0
[INFO] [stderr]    Compiling crossbeam-utils v0.8.21
[INFO] [stderr]    Compiling syn v2.0.101
[INFO] [stderr]    Compiling reborrow v0.5.5
[INFO] [stderr]    Compiling rayon-core v1.12.1
[INFO] [stderr]    Compiling seq-macro v0.3.6
[INFO] [stderr]    Compiling pulp v0.21.5
[INFO] [stderr]    Compiling memchr v2.7.4
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]    Compiling raw-cpuid v11.5.0
[INFO] [stderr]    Compiling raw-cpuid v10.7.0
[INFO] [stderr]    Compiling crossbeam-epoch v0.9.18
[INFO] [stderr]    Compiling rand_core v0.9.3
[INFO] [stderr]    Compiling crossbeam-deque v0.8.6
[INFO] [stderr]    Compiling jobserver v0.1.33
[INFO] [stderr]    Compiling cc v1.2.24
[INFO] [stderr]    Compiling libloading v0.8.8
[INFO] [stderr]    Compiling glob v0.3.2
[INFO] [stderr]    Compiling rayon v1.10.0
[INFO] [stderr]    Compiling ppv-lite86 v0.2.21
[INFO] [stderr]    Compiling clang-sys v1.8.1
[INFO] [stderr]    Compiling hashbrown v0.15.3
[INFO] [stderr]    Compiling prettyplease v0.2.32
[INFO] [stderr]    Compiling num-integer v0.1.46
[INFO] [stderr]    Compiling winnow v0.7.10
[INFO] [stderr]    Compiling rand_chacha v0.9.0
[INFO] [stderr]    Compiling rand v0.9.1
[INFO] [stderr]    Compiling toml_datetime v0.6.9
[INFO] [stderr]    Compiling indexmap v2.9.0
[INFO] [stderr]    Compiling regex-syntax v0.8.5
[INFO] [stderr]    Compiling nom v7.1.3
[INFO] [stderr]    Compiling lock_api v0.4.12
[INFO] [stderr]    Compiling rand_distr v0.5.1
[INFO] [stderr]    Compiling imgui-sys v0.12.0
[INFO] [stderr]    Compiling serde_json v1.0.140
[INFO] [stderr]    Compiling bindgen v0.70.1
[INFO] [stderr]    Compiling num-bigint v0.4.6
[INFO] [stderr]    Compiling toml_edit v0.22.26
[INFO] [stderr]    Compiling regex-automata v0.4.9
[INFO] [stderr]    Compiling synstructure v0.13.2
[INFO] [stderr]    Compiling cexpr v0.6.0
[INFO] [stderr]    Compiling itertools v0.13.0
[INFO] [stderr]    Compiling stable_deref_trait v1.2.0
[INFO] [stderr]    Compiling log v0.4.27
[INFO] [stderr]    Compiling smallvec v1.15.0
[INFO] [stderr]    Compiling parking_lot_core v0.9.10
[INFO] [stderr]    Compiling proc-macro-crate v3.3.0
[INFO] [stderr]    Compiling bytemuck_derive v1.9.3
[INFO] [stderr]    Compiling serde_derive v1.0.219
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling zerofrom-derive v0.1.6
[INFO] [stderr]    Compiling regex v1.11.1
[INFO] [stderr]    Compiling num_enum_derive v0.7.3
[INFO] [stderr]    Compiling bytemuck v1.23.0
[INFO] [stderr]    Compiling num-complex v0.4.6
[INFO] [stderr]    Compiling half v2.6.0
[INFO] [stderr]    Compiling dyn-stack v0.13.0
[INFO] [stderr]    Compiling dyn-stack v0.10.0
[INFO] [stderr]    Compiling thiserror v1.0.69
[INFO] [stderr]    Compiling zerofrom v0.1.6
[INFO] [stderr]    Compiling tracing-attributes v0.1.28
[INFO] [stderr]    Compiling yoke-derive v0.7.5
[INFO] [stderr]    Compiling pulp v0.18.22
[INFO] [stderr]    Compiling num-rational v0.4.2
[INFO] [stderr]    Compiling cmake v0.1.54
[INFO] [stderr]    Compiling num-iter v0.1.45
[INFO] [stderr]    Compiling tracing-core v0.1.33
[INFO] [stderr]    Compiling chlorine v1.0.13
[INFO] [stderr]    Compiling mint v0.5.9
[INFO] [stderr]    Compiling zip v1.1.4
[INFO] [stderr]    Compiling gemm-common v0.17.1
[INFO] [stderr]    Compiling tracing v0.1.41
[INFO] [stderr]    Compiling num v0.4.3
[INFO] [stderr]    Compiling yoke v0.7.5
[INFO] [stderr]    Compiling parking_lot v0.12.3
[INFO] [stderr]    Compiling num_enum v0.7.3
[INFO] [stderr]    Compiling displaydoc v0.2.5
[INFO] [stderr]    Compiling serde v1.0.219
[INFO] [stderr]    Compiling gemm-f32 v0.17.1
[INFO] [stderr]    Compiling gemm-c32 v0.17.1
[INFO] [stderr]    Compiling gemm-c64 v0.17.1
[INFO] [stderr]    Compiling gemm-f64 v0.17.1
[INFO] [stderr]    Compiling gemm-common v0.18.2
[INFO] [stderr]    Compiling gemm-f16 v0.17.1
[INFO] [stderr]    Compiling gemm-f32 v0.18.2
[INFO] [stderr]    Compiling gemm-f64 v0.18.2
[INFO] [stderr]    Compiling gemm-f16 v0.18.2
[INFO] [stderr]    Compiling gemm-c64 v0.18.2
[INFO] [stderr]    Compiling gemm-c32 v0.18.2
[INFO] [stderr]    Compiling raylib-sys v5.6.0 (https://github.com/raylib-rs/raylib-rs.git#66cb8eca)
[INFO] [stderr]    Compiling safetensors v0.4.5
[INFO] [stderr]    Compiling memmap2 v0.9.5
[INFO] [stderr]    Compiling gemm v0.18.2
[INFO] [stderr]    Compiling num_cpus v1.16.0
[INFO] [stderr]    Compiling crc32fast v1.4.2
[INFO] [stderr]    Compiling ug v0.4.0
[INFO] [stderr]    Compiling gemm v0.17.1
[INFO] [stderr]    Compiling imgui v0.12.0
[INFO] [stderr]    Compiling enum-iterator-derive v1.4.0
[INFO] [stderr]    Compiling enum-iterator v2.1.0
[INFO] [stderr]    Compiling candle-core v0.9.1 (https://github.com/huggingface/candle.git#5aed817f)
[INFO] [stderr]    Compiling candle-nn v0.9.1 (https://github.com/huggingface/candle.git#5aed817f)
[INFO] [stderr]    Compiling raylib v5.6.0 (https://github.com/raylib-rs/raylib-rs.git#66cb8eca)
[INFO] [stderr]    Compiling bio v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 3m 14s
[INFO] running `Command { std: "docker" "inspect" "9c0efc9720ba720bd8bca2915f46ffcde1a256db426fc349cd649f0264acb2f4", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "9c0efc9720ba720bd8bca2915f46ffcde1a256db426fc349cd649f0264acb2f4", kill_on_drop: false }`
[INFO] [stdout] 9c0efc9720ba720bd8bca2915f46ffcde1a256db426fc349cd649f0264acb2f4
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 6e5b83e60f2189d023f193b1144c9378aed13cbaebabbba8baace5b4a5b1b1a5
[INFO] running `Command { std: "docker" "start" "-a" "6e5b83e60f2189d023f193b1144c9378aed13cbaebabbba8baace5b4a5b1b1a5", kill_on_drop: false }`
[INFO] [stderr]    Compiling bio v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 1.09s
[INFO] running `Command { std: "docker" "inspect" "6e5b83e60f2189d023f193b1144c9378aed13cbaebabbba8baace5b4a5b1b1a5", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "6e5b83e60f2189d023f193b1144c9378aed13cbaebabbba8baace5b4a5b1b1a5", kill_on_drop: false }`
[INFO] [stdout] 6e5b83e60f2189d023f193b1144c9378aed13cbaebabbba8baace5b4a5b1b1a5
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 68bf2605e05b16e3f20f628df907367f0f5b117c2f37cd6af83d6aecf1e1b520
[INFO] running `Command { std: "docker" "start" "-a" "68bf2605e05b16e3f20f628df907367f0f5b117c2f37cd6af83d6aecf1e1b520", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.23s
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/debug/deps/bio-36dd485b0dd4435d)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "68bf2605e05b16e3f20f628df907367f0f5b117c2f37cd6af83d6aecf1e1b520", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "68bf2605e05b16e3f20f628df907367f0f5b117c2f37cd6af83d6aecf1e1b520", kill_on_drop: false }`
[INFO] [stdout] 68bf2605e05b16e3f20f628df907367f0f5b117c2f37cd6af83d6aecf1e1b520