[INFO] cloning repository https://github.com/althonos/pysylph
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/althonos/pysylph" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Falthonos%2Fpysylph", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Falthonos%2Fpysylph'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 7ec6ed08a36cc62a4ab5040363842296ddcfef3b
[INFO] testing althonos/pysylph against master#ad85bc524b1ad696e42061ad8338d382dffbdbe5 for pr-146237
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Falthonos%2Fpysylph" "/workspace/builds/worker-0-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-0-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/althonos/pysylph
[INFO] removed 0 missing tests
[INFO] finished tweaking git repo https://github.com/althonos/pysylph
[INFO] tweaked toml for git repo https://github.com/althonos/pysylph written to /workspace/builds/worker-0-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/althonos/pysylph on toolchain ad85bc524b1ad696e42061ad8338d382dffbdbe5
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/althonos/pysylph already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]     Updating git repository `https://github.com/bluenote-1577/sylph`
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded proc-macro2 v1.0.89
[INFO] [stderr]   Downloaded tikv-jemallocator v0.6.0
[INFO] [stderr]   Downloaded num_threads v0.1.7
[INFO] [stderr]   Downloaded unindent v0.2.3
[INFO] [stderr]   Downloaded pyo3-macros v0.22.6
[INFO] [stderr]   Downloaded pyo3-build-config v0.22.6
[INFO] [stderr]   Downloaded libm v0.2.11
[INFO] [stderr]   Downloaded clap_derive v3.2.25
[INFO] [stderr]   Downloaded pyo3-ffi v0.22.6
[INFO] [stderr]   Downloaded unsafe-libyaml v0.2.11
[INFO] [stderr]   Downloaded wide v0.7.28
[INFO] [stderr]   Downloaded statrs v0.16.1
[INFO] [stderr]   Downloaded serde_yaml v0.9.34+deprecated
[INFO] [stderr]   Downloaded portable-atomic v1.9.0
[INFO] [stderr]   Downloaded hashbrown v0.15.1
[INFO] [stderr]   Downloaded serde v1.0.214
[INFO] [stderr]   Downloaded matrixmultiply v0.3.9
[INFO] [stderr]   Downloaded clap v3.2.25
[INFO] [stderr]   Downloaded syn v2.0.87
[INFO] [stderr]   Downloaded safe_arch v0.7.2
[INFO] [stderr]   Downloaded pyo3-macros-backend v0.22.6
[INFO] [stderr]   Downloaded textwrap v0.16.1
[INFO] [stderr]   Downloaded nalgebra v0.29.0
[INFO] [stderr]   Downloaded simba v0.9.0
[INFO] [stderr]   Downloaded nalgebra v0.33.2
[INFO] [stderr]   Downloaded needletail v0.5.1
[INFO] [stderr]   Downloaded serde_derive v1.0.214
[INFO] [stderr]   Downloaded cc v1.1.36
[INFO] [stderr]   Downloaded os_str_bytes v6.6.1
[INFO] [stderr]   Downloaded buffer-redux v1.0.2
[INFO] [stderr]   Downloaded bzip2 v0.4.4
[INFO] [stderr]   Downloaded simple_logger v3.0.0
[INFO] [stderr]   Downloaded libz-ng-sys v1.1.20
[INFO] [stderr]   Downloaded simba v0.6.0
[INFO] [stderr]   Downloaded memory-stats v1.2.0
[INFO] [stderr]   Downloaded pyo3 v0.22.6
[INFO] [stderr]   Downloaded nalgebra-macros v0.2.2
[INFO] [stderr]   Downloaded bytecount v0.6.8
[INFO] [stderr]   Downloaded scalable_cuckoo_filter v0.2.4
[INFO] [stderr]   Downloaded regex-automata v0.4.8
[INFO] [stderr]   Downloaded bzip2-sys v0.1.11+1.0.8
[INFO] [stderr]   Downloaded tikv-jemalloc-sys v0.6.0+5.3.0-1-ge13ca993e8ccb9ba9847cc330696e02839f328f7
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] caf6916928561427e67c1a8ff6fbe452c6348d22b75b271acb8c671193951ddd
[INFO] running `Command { std: "docker" "start" "-a" "caf6916928561427e67c1a8ff6fbe452c6348d22b75b271acb8c671193951ddd", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "caf6916928561427e67c1a8ff6fbe452c6348d22b75b271acb8c671193951ddd", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "caf6916928561427e67c1a8ff6fbe452c6348d22b75b271acb8c671193951ddd", kill_on_drop: false }`
[INFO] [stdout] caf6916928561427e67c1a8ff6fbe452c6348d22b75b271acb8c671193951ddd
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 1445fe4d9534d4bc2d239dceaa14bf3733c24dae14a92b88237315605f3a4cc0
[INFO] running `Command { std: "docker" "start" "-a" "1445fe4d9534d4bc2d239dceaa14bf3733c24dae14a92b88237315605f3a4cc0", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.89
[INFO] [stderr]    Compiling libc v0.2.161
[INFO] [stderr]    Compiling autocfg v1.4.0
[INFO] [stderr]    Compiling target-lexicon v0.12.16
[INFO] [stderr]    Compiling libm v0.2.11
[INFO] [stderr]    Compiling once_cell v1.20.2
[INFO] [stderr]    Compiling cc v1.1.36
[INFO] [stderr]    Compiling byteorder v1.5.0
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]    Compiling bytemuck v1.19.0
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]    Compiling crossbeam-utils v0.8.20
[INFO] [stderr]    Compiling safe_arch v0.7.2
[INFO] [stderr]    Compiling matrixmultiply v0.3.9
[INFO] [stderr]    Compiling quote v1.0.37
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]    Compiling syn v2.0.87
[INFO] [stderr]    Compiling wide v0.7.28
[INFO] [stderr]    Compiling serde v1.0.214
[INFO] [stderr]    Compiling pyo3-build-config v0.22.6
[INFO] [stderr]    Compiling getrandom v0.2.15
[INFO] [stderr]    Compiling cmake v0.1.51
[INFO] [stderr]    Compiling rand_core v0.6.4
[INFO] [stderr]    Compiling approx v0.5.1
[INFO] [stderr]    Compiling num-complex v0.4.6
[INFO] [stderr]    Compiling num-integer v0.1.46
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]    Compiling libz-ng-sys v1.1.20
[INFO] [stderr]    Compiling bzip2-sys v0.1.11+1.0.8
[INFO] [stderr]    Compiling lzma-sys v0.1.20
[INFO] [stderr]    Compiling rawpointer v0.2.1
[INFO] [stderr]    Compiling crossbeam-epoch v0.9.18
[INFO] [stderr]    Compiling num-rational v0.4.2
[INFO] [stderr]    Compiling indexmap v1.9.3
[INFO] [stderr]    Compiling rayon-core v1.12.1
[INFO] [stderr]    Compiling lazy_static v1.5.0
[INFO] [stderr]    Compiling time-macros v0.2.18
[INFO] [stderr]    Compiling pyo3-macros-backend v0.22.6
[INFO] [stderr]    Compiling pyo3-ffi v0.22.6
[INFO] [stderr]    Compiling crossbeam-deque v0.8.5
[INFO] [stderr]    Compiling simba v0.6.0
[INFO] [stderr]    Compiling memoffset v0.9.1
[INFO] [stderr]    Compiling heck v0.4.1
[INFO] [stderr]    Compiling heck v0.5.0
[INFO] [stderr]    Compiling os_str_bytes v6.6.1
[INFO] [stderr]    Compiling hashbrown v0.15.1
[INFO] [stderr]    Compiling num_threads v0.1.7
[INFO] [stderr]    Compiling regex-syntax v0.8.5
[INFO] [stderr]    Compiling time v0.3.36
[INFO] [stderr]    Compiling indexmap v2.6.0
[INFO] [stderr]    Compiling clap_lex v0.2.4
[INFO] [stderr]    Compiling xz2 v0.1.7
[INFO] [stderr]    Compiling bzip2 v0.4.4
[INFO] [stderr]    Compiling nalgebra-macros v0.1.0
[INFO] [stderr]    Compiling clap_derive v3.2.25
[INFO] [stderr]    Compiling regex-automata v0.4.8
[INFO] [stderr]    Compiling pyo3 v0.22.6
[INFO] [stderr]    Compiling colored v2.1.0
[INFO] [stderr]    Compiling simba v0.9.0
[INFO] [stderr]    Compiling zerocopy-derive v0.7.35
[INFO] [stderr]    Compiling serde_derive v1.0.214
[INFO] [stderr]    Compiling zerocopy v0.7.35
[INFO] [stderr]    Compiling nalgebra-macros v0.2.2
[INFO] [stderr]    Compiling atty v0.2.14
[INFO] [stderr]    Compiling buffer-redux v1.0.2
[INFO] [stderr]    Compiling ppv-lite86 v0.2.20
[INFO] [stderr]    Compiling termcolor v1.4.1
[INFO] [stderr]    Compiling log v0.4.22
[INFO] [stderr]    Compiling bytecount v0.6.8
[INFO] [stderr]    Compiling rand_chacha v0.3.1
[INFO] [stderr]    Compiling unsafe-libyaml v0.2.11
[INFO] [stderr]    Compiling textwrap v0.16.1
[INFO] [stderr]    Compiling siphasher v1.0.1
[INFO] [stderr]    Compiling rand v0.8.5
[INFO] [stderr]    Compiling either v1.13.0
[INFO] [stderr]    Compiling clap v3.2.25
[INFO] [stderr]    Compiling rayon v1.10.0
[INFO] [stderr]    Compiling rand_distr v0.4.3
[INFO] [stderr]    Compiling scalable_cuckoo_filter v0.2.4
[INFO] [stderr]    Compiling simple_logger v3.0.0
[INFO] [stderr]    Compiling nalgebra v0.29.0
[INFO] [stderr]    Compiling pyo3-macros v0.22.6
[INFO] [stderr]    Compiling regex v1.11.1
[INFO] [stderr]    Compiling memory-stats v1.2.0
[INFO] [stderr]    Compiling fxhash v0.2.1
[INFO] [stderr]    Compiling fastrand v2.1.1
[INFO] [stderr]    Compiling indoc v2.0.5
[INFO] [stderr]    Compiling unindent v0.2.3
[INFO] [stderr]    Compiling nalgebra v0.33.2
[INFO] [stderr]    Compiling bincode v1.3.3
[INFO] [stderr]    Compiling serde_yaml v0.9.34+deprecated
[INFO] [stderr]    Compiling smallvec v1.13.2
[INFO] [stderr]    Compiling flate2 v1.0.34
[INFO] [stderr]    Compiling needletail v0.5.1
[INFO] [stderr]    Compiling statrs v0.16.1
[INFO] [stderr]    Compiling sylph v0.7.0 (https://github.com/bluenote-1577/sylph?tag=v0.7.0#d85aaf97)
[INFO] [stderr]    Compiling pysylph v0.1.2 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 2m 25s
[INFO] running `Command { std: "docker" "inspect" "1445fe4d9534d4bc2d239dceaa14bf3733c24dae14a92b88237315605f3a4cc0", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "1445fe4d9534d4bc2d239dceaa14bf3733c24dae14a92b88237315605f3a4cc0", kill_on_drop: false }`
[INFO] [stdout] 1445fe4d9534d4bc2d239dceaa14bf3733c24dae14a92b88237315605f3a4cc0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 8bdccd17043ec4221238907dabe1847bd4cadf5d0c1a19d1540d9c9aefa0d641
[INFO] running `Command { std: "docker" "start" "-a" "8bdccd17043ec4221238907dabe1847bd4cadf5d0c1a19d1540d9c9aefa0d641", kill_on_drop: false }`
[INFO] [stderr]    Compiling pysylph v0.1.2 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 3.62s
[INFO] running `Command { std: "docker" "inspect" "8bdccd17043ec4221238907dabe1847bd4cadf5d0c1a19d1540d9c9aefa0d641", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "8bdccd17043ec4221238907dabe1847bd4cadf5d0c1a19d1540d9c9aefa0d641", kill_on_drop: false }`
[INFO] [stdout] 8bdccd17043ec4221238907dabe1847bd4cadf5d0c1a19d1540d9c9aefa0d641
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 3df64bdcaf85b89d9170c1c46c9820200186916f81a3125e174fd067bcefb72f
[INFO] running `Command { std: "docker" "start" "-a" "3df64bdcaf85b89d9170c1c46c9820200186916f81a3125e174fd067bcefb72f", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.16s
[INFO] [stderr]      Running unittests src/pysylph/lib.rs (/opt/rustwide/target/debug/deps/pysylph-db2c418ab0955c76)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running src/pysylph/tests/unittest.rs (/opt/rustwide/target/debug/deps/unittest-d8aa0f26d092cbdf)
[INFO] [stderr] test_init_empty (pysylph.tests.test_database.TestDatabase.test_init_empty) ... ok
[INFO] [stderr] test_init_type_error (pysylph.tests.test_database.TestDatabase.test_init_type_error) ... ok
[INFO] [stderr] test_load_file_object (pysylph.tests.test_database.TestDatabase.test_load_file_object) ... ok
[INFO] [stderr] test_load_filename (pysylph.tests.test_database.TestDatabase.test_load_filename) ... ok
[INFO] [stderr] test_load_path (pysylph.tests.test_database.TestDatabase.test_load_path) ... ok
[INFO] [stderr] test_invalid_kmer (pysylph.tests.test_sketcher.TestSketcher.test_invalid_kmer) ... ok
[INFO] [stderr] test_sketch_genome_bytes (pysylph.tests.test_sketcher.TestSketcher.test_sketch_genome_bytes) ... ok
[INFO] [stderr] test_sketch_genome_memoryview (pysylph.tests.test_sketcher.TestSketcher.test_sketch_genome_memoryview) ... ok
[INFO] [stderr] test_sketch_genome_str (pysylph.tests.test_sketcher.TestSketcher.test_sketch_genome_str) ... ok
[INFO] [stderr] test_sketch_paired (pysylph.tests.test_sketcher.TestSketcher.test_sketch_paired) ... ok
[INFO] [stderr] test_sketch_single (pysylph.tests.test_sketcher.TestSketcher.test_sketch_single) ... ok
[INFO] [stderr] test_profile (pysylph.tests.test_profiler.TestProfiler.test_profile) ... ok
[INFO] [stderr] test_query (pysylph.tests.test_profiler.TestProfiler.test_query) ... ok
[INFO] [stderr] 
[INFO] [stderr] ----------------------------------------------------------------------
[INFO] [stderr] Ran 13 tests in 3.325s
[INFO] [stderr] 
[INFO] [stderr] OK
[INFO] running `Command { std: "docker" "inspect" "3df64bdcaf85b89d9170c1c46c9820200186916f81a3125e174fd067bcefb72f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "3df64bdcaf85b89d9170c1c46c9820200186916f81a3125e174fd067bcefb72f", kill_on_drop: false }`
[INFO] [stdout] 3df64bdcaf85b89d9170c1c46c9820200186916f81a3125e174fd067bcefb72f