[INFO] cloning repository https://github.com/ViralSeq/viRust-splicing
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/ViralSeq/viRust-splicing" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FViralSeq%2FviRust-splicing", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FViralSeq%2FviRust-splicing'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 4488a6a1d1a85ad0f04cab869bc69fde498bcd8c
[INFO] testing ViralSeq/viRust-splicing against master#ad85bc524b1ad696e42061ad8338d382dffbdbe5 for pr-146237
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FViralSeq%2FviRust-splicing" "/workspace/builds/worker-3-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-3-tc1/source'...
[INFO] [stderr] done.
[INFO] removed /workspace/builds/worker-3-tc1/source/rust-toolchain
[INFO] started tweaking git repo https://github.com/ViralSeq/viRust-splicing
[INFO] finished tweaking git repo https://github.com/ViralSeq/viRust-splicing
[INFO] tweaked toml for git repo https://github.com/ViralSeq/viRust-splicing written to /workspace/builds/worker-3-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/ViralSeq/viRust-splicing on toolchain ad85bc524b1ad696e42061ad8338d382dffbdbe5
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/ViralSeq/viRust-splicing already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded windows-link v0.1.0
[INFO] [stderr]   Downloaded dwrote v0.11.3
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[INFO] [stderr]   Downloaded bio-types v1.0.4
[INFO] [stderr]   Downloaded editdistancek v1.0.2
[INFO] [stderr]   Downloaded pest_generator v2.7.15
[INFO] [stderr]   Downloaded pathfinder_simd v0.5.4
[INFO] [stderr]   Downloaded pest_derive v2.7.15
[INFO] [stderr]   Downloaded triple_accel v0.4.0
[INFO] [stderr]   Downloaded wide v0.7.32
[INFO] [stderr]   Downloaded config v0.15.11
[INFO] [stderr]   Downloaded pest_meta v2.7.15
[INFO] [stderr]   Downloaded pest v2.7.15
[INFO] [stderr]   Downloaded statrs v0.18.0
[INFO] [stderr]   Downloaded clap_builder v4.5.35
[INFO] [stderr]   Downloaded yaml-rust2 v0.10.0
[INFO] [stderr]   Downloaded bio v2.2.0
[INFO] [stderr]   Downloaded font-kit v0.14.2
[INFO] [stderr]   Downloaded arraydeque v0.5.1
[INFO] [stderr]   Downloaded dlv-list v0.5.2
[INFO] [stderr]   Downloaded ordered-multimap v0.7.3
[INFO] [stderr]   Downloaded ordered-float v5.0.0
[INFO] [stderr]   Downloaded pathdiff v0.2.3
[INFO] [stderr]   Downloaded rust-ini v0.21.1
[INFO] [stderr]   Downloaded plotters-bitmap v0.3.7
[INFO] [stderr]   Downloaded newtype_derive v0.1.6
[INFO] [stderr]   Downloaded clap v4.5.35
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] eadc9ec373c1a246e26c36c8bddf06aa64a209ad0683ae61c81c35553ccf8edb
[INFO] running `Command { std: "docker" "start" "-a" "eadc9ec373c1a246e26c36c8bddf06aa64a209ad0683ae61c81c35553ccf8edb", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "eadc9ec373c1a246e26c36c8bddf06aa64a209ad0683ae61c81c35553ccf8edb", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "eadc9ec373c1a246e26c36c8bddf06aa64a209ad0683ae61c81c35553ccf8edb", kill_on_drop: false }`
[INFO] [stdout] eadc9ec373c1a246e26c36c8bddf06aa64a209ad0683ae61c81c35553ccf8edb
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] d497b7bd837bfda78527169ae5d74e0ac5fef191cee231c24dc4bf6d14973421
[INFO] running `Command { std: "docker" "start" "-a" "d497b7bd837bfda78527169ae5d74e0ac5fef191cee231c24dc4bf6d14973421", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.94
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[INFO] [stderr]    Compiling strsim v0.11.1
[INFO] [stderr]    Compiling bit-set v0.8.0
[INFO] [stderr]    Compiling rust-ini v0.21.1
[INFO] [stderr]    Compiling yaml-rust2 v0.10.0
[INFO] [stderr]    Compiling clap_builder v4.5.35
[INFO] [stderr]    Compiling chrono v0.4.40
[INFO] [stderr]    Compiling serde_derive v1.0.219
[INFO] [stderr]    Compiling thiserror-impl v2.0.12
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling enum-map-derive v0.17.0
[INFO] [stderr]    Compiling strum_macros v0.26.4
[INFO] [stderr]    Compiling derive-new v0.6.0
[INFO] [stderr]    Compiling pest v2.7.15
[INFO] [stderr]    Compiling enum-map v2.7.3
[INFO] [stderr]    Compiling plotters-bitmap v0.3.7
[INFO] [stderr]    Compiling clap_derive v4.5.32
[INFO] [stderr]    Compiling async-trait v0.1.88
[INFO] [stderr]    Compiling pest_meta v2.7.15
[INFO] [stderr]    Compiling nalgebra v0.33.2
[INFO] [stderr]    Compiling petgraph v0.7.1
[INFO] [stderr]    Compiling convert_case v0.6.0
[INFO] [stderr]    Compiling bio-types v1.0.4
[INFO] [stderr]    Compiling serde v1.0.219
[INFO] [stderr]    Compiling rayon-core v1.12.1
[INFO] [stderr]    Compiling pest_generator v2.7.15
[INFO] [stderr]    Compiling itertools v0.14.0
[INFO] [stderr]    Compiling plotters-svg v0.3.7
[INFO] [stderr]    Compiling ndarray v0.16.1
[INFO] [stderr]    Compiling itertools-num v0.1.3
[INFO] [stderr]    Compiling ordered-float v5.0.0
[INFO] [stderr]    Compiling fxhash v0.2.1
[INFO] [stderr]    Compiling triple_accel v0.4.0
[INFO] [stderr]    Compiling ttf-parser v0.20.0
[INFO] [stderr]    Compiling pest_derive v2.7.15
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[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling strum v0.26.3
[INFO] [stderr]    Compiling rayon v1.10.0
[INFO] [stderr]    Compiling clap v4.5.35
[INFO] [stderr]    Compiling rand_distr v0.5.1
[INFO] [stderr]    Compiling colored v3.0.0
[INFO] [stderr]    Compiling bitflags v2.9.0
[INFO] [stderr]    Compiling serde_spanned v0.6.8
[INFO] [stderr]    Compiling toml_datetime v0.6.8
[INFO] [stderr]    Compiling multimap v0.10.0
[INFO] [stderr]    Compiling ron v0.8.1
[INFO] [stderr]    Compiling toml_edit v0.22.24
[INFO] [stderr]    Compiling serde_json v1.0.140
[INFO] [stderr]    Compiling csv v1.3.1
[INFO] [stderr]    Compiling vec_map v0.8.2
[INFO] [stderr]    Compiling json5 v0.4.1
[INFO] [stderr]    Compiling plotters v0.3.7
[INFO] [stderr]    Compiling toml v0.8.20
[INFO] [stderr]    Compiling config v0.15.11
[INFO] [stderr]    Compiling statrs v0.18.0
[INFO] [stderr]    Compiling bio v2.2.0
[INFO] [stderr]    Compiling virust-splicing v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 2m 29s
[INFO] running `Command { std: "docker" "inspect" "d497b7bd837bfda78527169ae5d74e0ac5fef191cee231c24dc4bf6d14973421", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "d497b7bd837bfda78527169ae5d74e0ac5fef191cee231c24dc4bf6d14973421", kill_on_drop: false }`
[INFO] [stdout] d497b7bd837bfda78527169ae5d74e0ac5fef191cee231c24dc4bf6d14973421
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 90a262e3604edf92a067dd0c96e9a414a7a5a80c225fcdfb8b969b68b08a5846
[INFO] running `Command { std: "docker" "start" "-a" "90a262e3604edf92a067dd0c96e9a414a7a5a80c225fcdfb8b969b68b08a5846", kill_on_drop: false }`
[INFO] [stderr]    Compiling serde v1.0.219
[INFO] [stderr]    Compiling half v2.5.0
[INFO] [stderr]    Compiling ciborium-io v0.2.2
[INFO] [stderr]    Compiling itertools v0.10.5
[INFO] [stderr]    Compiling cast v0.3.0
[INFO] [stderr]    Compiling is-terminal v0.4.16
[INFO] [stderr]    Compiling oorandom v11.1.5
[INFO] [stderr]    Compiling anes v0.1.6
[INFO] [stderr]    Compiling ciborium-ll v0.2.2
[INFO] [stderr]    Compiling criterion-plot v0.5.0
[INFO] [stderr]    Compiling bitflags v2.9.0
[INFO] [stderr]    Compiling serde_json v1.0.140
[INFO] [stderr]    Compiling serde_spanned v0.6.8
[INFO] [stderr]    Compiling toml_datetime v0.6.8
[INFO] [stderr]    Compiling multimap v0.10.0
[INFO] [stderr]    Compiling json5 v0.4.1
[INFO] [stderr]    Compiling vec_map v0.8.2
[INFO] [stderr]    Compiling csv v1.3.1
[INFO] [stderr]    Compiling toml_edit v0.22.24
[INFO] [stderr]    Compiling font-kit v0.14.2
[INFO] [stderr]    Compiling ron v0.8.1
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]    Compiling ciborium v0.2.2
[INFO] [stderr]    Compiling plotters v0.3.7
[INFO] [stderr]    Compiling bio v2.2.0
[INFO] [stderr]    Compiling tinytemplate v1.2.1
[INFO] [stderr]    Compiling criterion v0.5.1
[INFO] [stderr]    Compiling toml v0.8.20
[INFO] [stderr]    Compiling config v0.15.11
[INFO] [stderr]    Compiling virust-splicing v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 39.11s
[INFO] running `Command { std: "docker" "inspect" "90a262e3604edf92a067dd0c96e9a414a7a5a80c225fcdfb8b969b68b08a5846", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "90a262e3604edf92a067dd0c96e9a414a7a5a80c225fcdfb8b969b68b08a5846", kill_on_drop: false }`
[INFO] [stdout] 90a262e3604edf92a067dd0c96e9a414a7a5a80c225fcdfb8b969b68b08a5846
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 2b36fca1c89d189b6172e6b557ccd00f0aef6fa656dfa76b0571c5c225c4f3b4
[INFO] running `Command { std: "docker" "start" "-a" "2b36fca1c89d189b6172e6b557ccd00f0aef6fa656dfa76b0571c5c225c4f3b4", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.25s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/virust_splicing-94191c1d98aff0d9)
[INFO] [stdout] 
[INFO] [stdout] running 20 tests
[INFO] [stdout] test config::tests::test_build_splice_step ... ok
[INFO] [stdout] test splice_events::tests::test_display_splice_events ... ok
[INFO] [stdout] test joined_umi_sequence::tests::test_joined_umi_sequence ... ok
[INFO] [stdout] test splice_events::tests::test_slice_from_end ... ok
[INFO] [stdout] test config::tests::test_args ... ok
[INFO] [stdout] test config::tests::test_splice_config ... ok
[INFO] [stdout] test joined_umi_sequence::tests::test_find_overlap ... ok
[INFO] [stdout] test joined_umi_sequence::tests::test_reverse_complement ... ok
[INFO] [stdout] test splice_events::tests::test_display_size_class ... ok
[INFO] [stdout] test umi::tests::test_find_umi_family_2 ... ok
[INFO] [stdout] test umi::tests::test_generate_umi ... ok
[INFO] [stdout] test umi::tests::test_generate_umis ... ok
[INFO] [stdout] test umi::tests::test_validate_umis_by_length ... ok
[INFO] [stdout] test umi::tests::test_find_umi_family ... ok
[INFO] [stdout] test tests::test_pattern_search ... ok
[INFO] [stdout] test umi::tests::test_umi_cut_off ... ok
[INFO] [stdout] test splice_events::tests::test_find_umi_family_from_events ... ok
[INFO] [stdout] test splice_events::tests::test_size_class ... ok
[INFO] [stdout] test umi::tests::test_simulate_umi_distribution_panic - should panic ... ok
[INFO] [stdout] test umi::tests::test_simulate_umi_distribution ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 20 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.69s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/bin/mockdata/main.rs (/opt/rustwide/target/debug/deps/mockdata-329049d6ef1dab60)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/debug/deps/virust_splicing-f528986cf7809f6f)
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests virust_splicing
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "2b36fca1c89d189b6172e6b557ccd00f0aef6fa656dfa76b0571c5c225c4f3b4", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "2b36fca1c89d189b6172e6b557ccd00f0aef6fa656dfa76b0571c5c225c4f3b4", kill_on_drop: false }`
[INFO] [stdout] 2b36fca1c89d189b6172e6b557ccd00f0aef6fa656dfa76b0571c5c225c4f3b4