[INFO] cloning repository https://github.com/NickRoz1/gbam [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/NickRoz1/gbam" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FNickRoz1%2Fgbam", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FNickRoz1%2Fgbam'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 90ef03c8d50bdcc30b4d42796d7aa87b02d36522 [INFO] testing NickRoz1/gbam against master#ad85bc524b1ad696e42061ad8338d382dffbdbe5 for pr-146237 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FNickRoz1%2Fgbam" "/workspace/builds/worker-2-tc1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-2-tc1/source'... [INFO] [stderr] done. [INFO] started tweaking git repo https://github.com/NickRoz1/gbam [INFO] finished tweaking git repo https://github.com/NickRoz1/gbam [INFO] tweaked toml for git repo https://github.com/NickRoz1/gbam written to /workspace/builds/worker-2-tc1/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/NickRoz1/gbam on toolchain ad85bc524b1ad696e42061ad8338d382dffbdbe5 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Updating crates.io index [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Locking 173 packages to latest compatible versions [INFO] [stderr] Adding bincode v1.3.3 (available: v2.0.1) [INFO] [stderr] Adding bitflags v1.3.2 (available: v2.9.4) [INFO] [stderr] Adding brotli v3.5.0 (available: v8.0.2) [INFO] [stderr] Adding flume v0.10.14 (available: v0.11.1) [INFO] [stderr] Adding indicatif v0.16.2 (available: v0.18.0) [INFO] [stderr] Adding itertools v0.10.5 (available: v0.14.0) [INFO] [stderr] Adding itertools v0.13.0 (available: v0.14.0) [INFO] [stderr] Adding lz4_flex v0.8.2 (available: v0.11.5) [INFO] [stderr] Adding lzzzz v1.1.0 (available: v2.0.0) [INFO] [stderr] Adding md5 v0.7.0 (available: v0.8.0) [INFO] [stderr] Adding memmap2 v0.3.1 (available: v0.9.8) [INFO] [stderr] Adding memmap2 v0.7.1 (available: v0.9.8) [INFO] [stderr] Adding num_cpus v0.2.13 (available: v1.17.0) [INFO] [stderr] Adding rand v0.8.5 (available: v0.9.2) [INFO] [stderr] Adding rust-htslib v0.39.5 (available: v0.50.0) [INFO] [stderr] Adding zstd v0.12.4 (available: v0.13.3) [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded newtype_derive v0.1.6 [INFO] [stderr] Downloaded tempdir v0.3.7 [INFO] [stderr] Downloaded fs-utils v1.1.4 [INFO] [stderr] Downloaded ieee754 v0.2.6 [INFO] [stderr] Downloaded derive-new v0.6.0 [INFO] [stderr] Downloaded console v0.16.1 [INFO] [stderr] Downloaded lz4_flex v0.8.2 [INFO] [stderr] Downloaded bio-types v1.0.4 [INFO] [stderr] Downloaded derive-new v0.5.9 [INFO] [stderr] Downloaded memmap2 v0.3.1 [INFO] [stderr] Downloaded zstd-sys v2.0.16+zstd.1.5.7 [INFO] [stderr] Downloaded libz-sys v1.1.22 [INFO] [stderr] Downloaded rust-htslib v0.39.5 [INFO] [stderr] Downloaded lzzzz v1.1.0 [INFO] [stderr] Downloaded hts-sys v2.2.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" 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"ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 15ce5ebac6d5f83db0453b6d88e5eaf36fe1fcca2d86ab72b1b674ec9e93b2bd [INFO] running `Command { std: "docker" "start" "-a" "15ce5ebac6d5f83db0453b6d88e5eaf36fe1fcca2d86ab72b1b674ec9e93b2bd", kill_on_drop: false }` [INFO] [stderr] Compiling find-msvc-tools v0.1.1 [INFO] [stderr] Compiling pkg-config v0.3.32 [INFO] [stderr] Compiling rustversion v1.0.22 [INFO] [stderr] Compiling smallvec v1.15.1 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Compiling proc-macro-error-attr v1.0.4 [INFO] [stderr] Compiling syn v2.0.106 [INFO] [stderr] Compiling jobserver v0.1.34 [INFO] [stderr] Compiling getrandom v0.2.16 [INFO] [stderr] Compiling syn v1.0.109 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] 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thiserror v1.0.69 [INFO] [stderr] Compiling flume v0.10.14 [INFO] [stderr] Compiling zerofrom v0.1.6 [INFO] [stderr] Compiling yoke v0.8.0 [INFO] [stderr] Compiling zerovec v0.11.4 [INFO] [stderr] Compiling zerotrie v0.2.2 [INFO] [stderr] Compiling bio-types v1.0.4 [INFO] [stderr] Compiling serde v1.0.219 [INFO] [stderr] Compiling tinystr v0.8.1 [INFO] [stderr] Compiling potential_utf v0.1.3 [INFO] [stderr] Compiling icu_collections v2.0.0 [INFO] [stderr] Compiling icu_locale_core v2.0.0 [INFO] [stderr] Compiling icu_provider v2.0.0 [INFO] [stderr] Compiling icu_normalizer v2.0.0 [INFO] [stderr] Compiling icu_properties v2.0.1 [INFO] [stderr] Compiling idna_adapter v1.2.1 [INFO] [stderr] Compiling idna v1.1.0 [INFO] [stderr] Compiling url v2.5.7 [INFO] [stderr] Compiling bincode v1.3.3 [INFO] [stderr] Compiling bam_tools v0.1.0 (/opt/rustwide/workdir/bam_tools) [INFO] [stderr] Compiling serde_json v1.0.143 [INFO] [stdout] warning: field `track_progress` is never read [INFO] [stdout] --> bam_tools/src/reader.rs:22:5 [INFO] [stdout] | [INFO] [stdout] 17 | pub struct Reader { [INFO] [stdout] | ------ field in this struct [INFO] [stdout] ... [INFO] [stdout] 22 | track_progress: Option, [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: methods `get_name` and `get_refid` are never used [INFO] [stdout] --> bam_tools/src/record/bamrawrecord.rs:107:19 [INFO] [stdout] | [INFO] [stdout] 15 | impl<'a> BAMRawRecord<'a> { [INFO] [stdout] | ------------------------- methods in this implementation [INFO] [stdout] ... [INFO] [stdout] 107 | pub(crate) fn get_name(&self) -> &str { [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 111 | pub(crate) fn get_refid(&self) -> i32 { [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> bam_tools/src/sorting/sort.rs:464:20 [INFO] [stdout] | [INFO] [stdout] 464 | pub fn get_key(&self) -> (&KeyTuple, usize) { [INFO] [stdout] | ^^^^^ ^^^^^^^^^ [INFO] [stdout] | | || [INFO] [stdout] | | |the same lifetime is hidden here [INFO] [stdout] | | the same lifetime is elided here [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 464 | pub fn get_key(&self) -> (&KeyTuple<'_>, usize) { [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: eliding a lifetime that's named elsewhere is confusing [INFO] [stdout] --> bam_tools/src/reader/records.rs:16:58 [INFO] [stdout] | [INFO] [stdout] 16 | pub(crate) fn new(reader: &'a mut Reader) -> Records<'_> { [INFO] [stdout] | -- ^^ the same lifetime is elided here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is named here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] help: consistently use `'a` [INFO] [stdout] | [INFO] [stdout] 16 - pub(crate) fn new(reader: &'a mut Reader) -> Records<'_> { [INFO] [stdout] 16 + pub(crate) fn new(reader: &'a mut Reader) -> Records<'a> { [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Compiling rust-htslib v0.39.5 [INFO] [stderr] Compiling gbam_tools v0.1.0 (/opt/rustwide/workdir/gbam_tools) [INFO] [stdout] warning: unexpected `cfg` condition value: `python-ffi` [INFO] [stdout] --> gbam_tools/src/lib.rs:28:11 [INFO] [stdout] | [INFO] [stdout] 28 | #[cfg(not(feature = "python-ffi"))] [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^ help: remove the condition [INFO] [stdout] | [INFO] [stdout] = note: no expected values for `feature` [INFO] [stdout] = help: consider adding `python-ffi` as a feature in `Cargo.toml` [INFO] [stdout] = note: see for more information about checking conditional configuration [INFO] [stdout] = note: `#[warn(unexpected_cfgs)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unexpected `cfg` condition value: `python-ffi` [INFO] [stdout] --> gbam_tools/src/reader/parse_tmplt.rs:133:7 [INFO] [stdout] | [INFO] [stdout] 133 | #[cfg(feature = "python-ffi")] [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^ help: remove the condition [INFO] [stdout] | [INFO] [stdout] = note: no expected values for `feature` [INFO] [stdout] = help: consider adding `python-ffi` as a feature in `Cargo.toml` [INFO] [stdout] = note: see for more information about checking conditional configuration [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `Mutex` and `OnceLock` [INFO] [stdout] --> gbam_tools/src/compressor.rs:14:17 [INFO] [stdout] | [INFO] [stdout] 14 | use std::sync::{Mutex, OnceLock}; [INFO] [stdout] | ^^^^^ ^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::fmt::Write as FmtWrite` [INFO] [stdout] --> gbam_tools/src/compressor.rs:15:5 [INFO] [stdout] | [INFO] [stdout] 15 | use std::fmt::Write as FmtWrite; // For formatting into String [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `bam_tools::record::fields::Fields` [INFO] [stdout] --> gbam_tools/src/compressor.rs:16:5 [INFO] [stdout] | [INFO] [stdout] 16 | use bam_tools::record::fields::Fields; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::fs::File` [INFO] [stdout] --> gbam_tools/src/compressor.rs:17:5 [INFO] [stdout] | [INFO] [stdout] 17 | use std::fs::File; [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::path::Path` [INFO] [stdout] --> gbam_tools/src/writer.rs:17:5 [INFO] [stdout] | [INFO] [stdout] 17 | use std::path::Path; [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `Write` [INFO] [stdout] --> gbam_tools/src/reader/column.rs:12:21 [INFO] [stdout] | [INFO] [stdout] 12 | use std::io::{Read, Write}; [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `file_meta` [INFO] [stdout] --> gbam_tools/src/query/depth.rs:65:5 [INFO] [stdout] | [INFO] [stdout] 65 | file_meta: Arc, [INFO] [stdout] | ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_file_meta` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `number_of_records` [INFO] [stdout] --> gbam_tools/src/query/depth.rs:67:5 [INFO] [stdout] | [INFO] [stdout] 67 | number_of_records: usize, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] help: if this is intentional, prefix it with an underscore [INFO] [stdout] | [INFO] [stdout] 67 | _number_of_records: usize, [INFO] [stdout] | + [INFO] [stdout] help: you might have meant to pattern match on the similarly named constant `SIZE_LIMIT` [INFO] [stdout] | [INFO] [stdout] 67 - number_of_records: usize, [INFO] [stdout] 67 + SIZE_LIMIT: usize, [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `file` [INFO] [stdout] --> gbam_tools/src/query/depth.rs:368:17 [INFO] [stdout] | [INFO] [stdout] 368 | let file = gbam_file.try_clone().unwrap(); [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_file` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `log_line` [INFO] [stdout] --> gbam_tools/src/compressor.rs:97:21 [INFO] [stdout] | [INFO] [stdout] 97 | let log_line = format!( [INFO] [stdout] | ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_log_line` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `find_leftmost_block` is never used [INFO] [stdout] --> gbam_tools/src/query/depth.rs:438:4 [INFO] [stdout] | [INFO] [stdout] 438 | fn find_leftmost_block(id: i32, block_metas: &Vec) -> Option { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `find_rightmost_block` is never used [INFO] [stdout] --> gbam_tools/src/query/depth.rs:462:4 [INFO] [stdout] | [INFO] [stdout] 462 | fn find_rightmost_block(id: i32, block_metas: &Vec) -> i64 { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> gbam_tools/src/reader/reader.rs:121:20 [INFO] [stdout] | [INFO] [stdout] 121 | pub fn records(&mut self) -> Records { [INFO] [stdout] | ^^^^^^^^^ ^^^^^^^ the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 121 | pub fn records(&mut self) -> Records<'_> { [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> gbam_tools/src/query/cigar.rs:80:16 [INFO] [stdout] | [INFO] [stdout] 80 | pub fn ops(&self) -> Iter { [INFO] [stdout] | ^^^^^ ^^^^^^^^ the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 80 | pub fn ops(&self) -> Iter<'_, Op> { [INFO] [stdout] | +++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> gbam_tools/src/writer.rs:321:23 [INFO] [stdout] | [INFO] [stdout] 321 | pub fn write_data(&mut self, data: &[u8]) -> WriteStatus { [INFO] [stdout] | ^^^^^^^^^ ^^^^^^^^^^^ the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 321 | pub fn write_data(&mut self, data: &[u8]) -> WriteStatus<'_> { [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> gbam_tools/src/writer.rs:370:27 [INFO] [stdout] | [INFO] [stdout] 370 | fn write_record_field(&mut self, rec: &BAMRawRecord) -> WriteStatus; [INFO] [stdout] | ^^^^^^^^^ ^^^^^^^^^^^ the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 370 | fn write_record_field(&mut self, rec: &BAMRawRecord) -> WriteStatus<'_>; [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> gbam_tools/src/writer.rs:388:27 [INFO] [stdout] | [INFO] [stdout] 388 | fn write_record_field(&mut self, rec: &BAMRawRecord) -> WriteStatus { [INFO] [stdout] | ^^^^^^^^^ ^^^^^^^^^^^ the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 388 | fn write_record_field(&mut self, rec: &BAMRawRecord) -> WriteStatus<'_> { [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> gbam_tools/src/writer.rs:426:27 [INFO] [stdout] | [INFO] [stdout] 426 | fn write_record_field(&mut self, rec: &BAMRawRecord) -> WriteStatus { [INFO] [stdout] | ^^^^^^^^^ ^^^^^^^^^^^ the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 426 | fn write_record_field(&mut self, rec: &BAMRawRecord) -> WriteStatus<'_> { [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Compiling gbam_binary v0.1.0 (/opt/rustwide/workdir/gbam_binary) [INFO] [stdout] warning: function `parse_tag` is never used [INFO] [stdout] --> gbam_binary/src/main.rs:347:4 [INFO] [stdout] | [INFO] [stdout] 347 | fn parse_tag(tags: &[u8], target_tag: &str) -> Option { [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 51.36s [INFO] running `Command { std: "docker" "inspect" "15ce5ebac6d5f83db0453b6d88e5eaf36fe1fcca2d86ab72b1b674ec9e93b2bd", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "15ce5ebac6d5f83db0453b6d88e5eaf36fe1fcca2d86ab72b1b674ec9e93b2bd", kill_on_drop: false }` [INFO] [stdout] 15ce5ebac6d5f83db0453b6d88e5eaf36fe1fcca2d86ab72b1b674ec9e93b2bd [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 631f8dabb17714a8135391d540b4dccd4e26933be6d745235f994beeae5a0ad0 [INFO] running `Command { std: "docker" "start" "-a" "631f8dabb17714a8135391d540b4dccd4e26933be6d745235f994beeae5a0ad0", kill_on_drop: false }` [INFO] [stdout] warning: field `track_progress` is never read [INFO] [stdout] --> bam_tools/src/reader.rs:22:5 [INFO] [stdout] | [INFO] [stdout] 17 | pub struct Reader { [INFO] [stdout] | ------ field in this struct [INFO] [stdout] ... [INFO] [stdout] 22 | track_progress: Option, [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: methods `get_name` and `get_refid` are never used [INFO] [stdout] --> bam_tools/src/record/bamrawrecord.rs:107:19 [INFO] [stdout] | [INFO] [stdout] 15 | impl<'a> BAMRawRecord<'a> { [INFO] [stdout] | ------------------------- methods in this implementation [INFO] [stdout] ... [INFO] [stdout] 107 | pub(crate) fn get_name(&self) -> &str { [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 111 | pub(crate) fn get_refid(&self) -> i32 { [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> bam_tools/src/sorting/sort.rs:464:20 [INFO] [stdout] | [INFO] [stdout] 464 | pub fn get_key(&self) -> (&KeyTuple, usize) { [INFO] [stdout] | ^^^^^ ^^^^^^^^^ [INFO] [stdout] | | || [INFO] [stdout] | | |the same lifetime is hidden here [INFO] [stdout] | | the same lifetime is elided here [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 464 | pub fn get_key(&self) -> (&KeyTuple<'_>, usize) { [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: eliding a lifetime that's named elsewhere is confusing [INFO] [stdout] --> bam_tools/src/reader/records.rs:16:58 [INFO] [stdout] | [INFO] [stdout] 16 | pub(crate) fn new(reader: &'a mut Reader) -> Records<'_> { [INFO] [stdout] | -- ^^ the same lifetime is elided here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is named here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] help: consistently use `'a` [INFO] [stdout] | [INFO] [stdout] 16 - pub(crate) fn new(reader: &'a mut Reader) -> Records<'_> { [INFO] [stdout] 16 + pub(crate) fn new(reader: &'a mut Reader) -> Records<'a> { [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unexpected `cfg` condition value: `python-ffi` [INFO] [stdout] --> gbam_tools/src/lib.rs:28:11 [INFO] [stdout] | [INFO] [stdout] 28 | #[cfg(not(feature = "python-ffi"))] [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^ help: remove the condition [INFO] [stdout] | [INFO] [stdout] = note: no expected values for `feature` [INFO] [stdout] = help: consider adding `python-ffi` as a feature in `Cargo.toml` [INFO] [stdout] = note: see for more information about checking conditional configuration [INFO] [stdout] = note: `#[warn(unexpected_cfgs)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unexpected `cfg` condition value: `python-ffi` [INFO] [stdout] --> gbam_tools/src/reader/parse_tmplt.rs:133:7 [INFO] [stdout] | [INFO] [stdout] 133 | #[cfg(feature = "python-ffi")] [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^ help: remove the condition [INFO] [stdout] | [INFO] [stdout] = note: no expected values for `feature` [INFO] [stdout] = help: consider adding `python-ffi` as a feature in `Cargo.toml` [INFO] [stdout] = note: see for more information about checking conditional configuration [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `Mutex` and `OnceLock` [INFO] [stdout] --> gbam_tools/src/compressor.rs:14:17 [INFO] [stdout] | [INFO] [stdout] 14 | use std::sync::{Mutex, OnceLock}; [INFO] [stdout] | ^^^^^ ^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::fmt::Write as FmtWrite` [INFO] [stdout] --> gbam_tools/src/compressor.rs:15:5 [INFO] [stdout] | [INFO] [stdout] 15 | use std::fmt::Write as FmtWrite; // For formatting into String [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `bam_tools::record::fields::Fields` [INFO] [stdout] --> gbam_tools/src/compressor.rs:16:5 [INFO] [stdout] | [INFO] [stdout] 16 | use bam_tools::record::fields::Fields; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::fs::File` [INFO] [stdout] --> gbam_tools/src/compressor.rs:17:5 [INFO] [stdout] | [INFO] [stdout] 17 | use std::fs::File; [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::path::Path` [INFO] [stdout] --> gbam_tools/src/writer.rs:17:5 [INFO] [stdout] | [INFO] [stdout] 17 | use std::path::Path; [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `Write` [INFO] [stdout] --> gbam_tools/src/reader/column.rs:12:21 [INFO] [stdout] | [INFO] [stdout] 12 | use std::io::{Read, Write}; [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `file_meta` [INFO] [stdout] --> gbam_tools/src/query/depth.rs:65:5 [INFO] [stdout] | [INFO] [stdout] 65 | file_meta: Arc, [INFO] [stdout] | ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_file_meta` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Compiling gbam_tools v0.1.0 (/opt/rustwide/workdir/gbam_tools) [INFO] [stdout] warning: unused variable: `number_of_records` [INFO] [stdout] --> gbam_tools/src/query/depth.rs:67:5 [INFO] [stdout] | [INFO] [stdout] 67 | number_of_records: usize, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] help: if this is intentional, prefix it with an underscore [INFO] [stdout] | [INFO] [stdout] 67 | _number_of_records: usize, [INFO] [stdout] | + [INFO] [stdout] help: you might have meant to pattern match on the similarly named constant `SIZE_LIMIT` [INFO] [stdout] | [INFO] [stdout] 67 - number_of_records: usize, [INFO] [stdout] 67 + SIZE_LIMIT: usize, [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Compiling bam_tools v0.1.0 (/opt/rustwide/workdir/bam_tools) [INFO] [stdout] warning: unused variable: `file` [INFO] [stdout] --> gbam_tools/src/query/depth.rs:368:17 [INFO] [stdout] | [INFO] [stdout] 368 | let file = gbam_file.try_clone().unwrap(); [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_file` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `log_line` [INFO] [stdout] --> gbam_tools/src/compressor.rs:97:21 [INFO] [stdout] | [INFO] [stdout] 97 | let log_line = format!( [INFO] [stdout] | ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_log_line` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `find_leftmost_block` is never used [INFO] [stdout] --> gbam_tools/src/query/depth.rs:438:4 [INFO] [stdout] | [INFO] [stdout] 438 | fn find_leftmost_block(id: i32, block_metas: &Vec) -> Option { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `find_rightmost_block` is never used [INFO] [stdout] --> gbam_tools/src/query/depth.rs:462:4 [INFO] [stdout] | [INFO] [stdout] 462 | fn find_rightmost_block(id: i32, block_metas: &Vec) -> i64 { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> gbam_tools/src/reader/reader.rs:121:20 [INFO] [stdout] | [INFO] [stdout] 121 | pub fn records(&mut self) -> Records { [INFO] [stdout] | ^^^^^^^^^ ^^^^^^^ the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 121 | pub fn records(&mut self) -> Records<'_> { [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> gbam_tools/src/query/cigar.rs:80:16 [INFO] [stdout] | [INFO] [stdout] 80 | pub fn ops(&self) -> Iter { [INFO] [stdout] | ^^^^^ ^^^^^^^^ the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 80 | pub fn ops(&self) -> Iter<'_, Op> { [INFO] [stdout] | +++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> gbam_tools/src/writer.rs:321:23 [INFO] [stdout] | [INFO] [stdout] 321 | pub fn write_data(&mut self, data: &[u8]) -> WriteStatus { [INFO] [stdout] | ^^^^^^^^^ ^^^^^^^^^^^ the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 321 | pub fn write_data(&mut self, data: &[u8]) -> WriteStatus<'_> { [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> gbam_tools/src/writer.rs:370:27 [INFO] [stdout] | [INFO] [stdout] 370 | fn write_record_field(&mut self, rec: &BAMRawRecord) -> WriteStatus; [INFO] [stdout] | ^^^^^^^^^ ^^^^^^^^^^^ the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 370 | fn write_record_field(&mut self, rec: &BAMRawRecord) -> WriteStatus<'_>; [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> gbam_tools/src/writer.rs:388:27 [INFO] [stdout] | [INFO] [stdout] 388 | fn write_record_field(&mut self, rec: &BAMRawRecord) -> WriteStatus { [INFO] [stdout] | ^^^^^^^^^ ^^^^^^^^^^^ the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 388 | fn write_record_field(&mut self, rec: &BAMRawRecord) -> WriteStatus<'_> { [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> gbam_tools/src/writer.rs:426:27 [INFO] [stdout] | [INFO] [stdout] 426 | fn write_record_field(&mut self, rec: &BAMRawRecord) -> WriteStatus { [INFO] [stdout] | ^^^^^^^^^ ^^^^^^^^^^^ the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 426 | fn write_record_field(&mut self, rec: &BAMRawRecord) -> WriteStatus<'_> { [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Compiling gbam_binary v0.1.0 (/opt/rustwide/workdir/gbam_binary) [INFO] [stdout] warning: unexpected `cfg` condition value: `python-ffi` [INFO] [stdout] --> gbam_tools/src/lib.rs:28:11 [INFO] [stdout] | [INFO] [stdout] 28 | #[cfg(not(feature = "python-ffi"))] [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^ help: remove the condition [INFO] [stdout] | [INFO] [stdout] = note: no expected values for `feature` [INFO] [stdout] = help: consider adding `python-ffi` as a feature in `Cargo.toml` [INFO] [stdout] = note: see for more information about checking conditional configuration [INFO] [stdout] = note: `#[warn(unexpected_cfgs)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unexpected `cfg` condition value: `python-ffi` [INFO] [stdout] --> gbam_tools/src/reader/parse_tmplt.rs:133:7 [INFO] [stdout] | [INFO] [stdout] 133 | #[cfg(feature = "python-ffi")] [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^ help: remove the condition [INFO] [stdout] | [INFO] [stdout] = note: no expected values for `feature` [INFO] [stdout] = help: consider adding `python-ffi` as a feature in `Cargo.toml` [INFO] [stdout] = note: see for more information about checking conditional configuration [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `Mutex` and `OnceLock` [INFO] [stdout] --> gbam_tools/src/compressor.rs:14:17 [INFO] [stdout] | [INFO] [stdout] 14 | use std::sync::{Mutex, OnceLock}; [INFO] [stdout] | ^^^^^ ^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::fmt::Write as FmtWrite` [INFO] [stdout] --> gbam_tools/src/compressor.rs:15:5 [INFO] [stdout] | [INFO] [stdout] 15 | use std::fmt::Write as FmtWrite; // For formatting into String [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `bam_tools::record::fields::Fields` [INFO] [stdout] --> gbam_tools/src/compressor.rs:16:5 [INFO] [stdout] | [INFO] [stdout] 16 | use bam_tools::record::fields::Fields; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::fs::File` [INFO] [stdout] --> gbam_tools/src/compressor.rs:17:5 [INFO] [stdout] | [INFO] [stdout] 17 | use std::fs::File; [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::path::Path` [INFO] [stdout] --> gbam_tools/src/writer.rs:17:5 [INFO] [stdout] | [INFO] [stdout] 17 | use std::path::Path; [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `track_progress` is never read [INFO] [stdout] --> bam_tools/src/reader.rs:22:5 [INFO] [stdout] | [INFO] [stdout] 17 | pub struct Reader { [INFO] [stdout] | ------ field in this struct [INFO] [stdout] ... [INFO] [stdout] 22 | track_progress: Option, [INFO] [stdout] | ^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: methods `get_name` and `get_refid` are never used [INFO] [stdout] --> bam_tools/src/record/bamrawrecord.rs:107:19 [INFO] [stdout] | [INFO] [stdout] 15 | impl<'a> BAMRawRecord<'a> { [INFO] [stdout] | ------------------------- methods in this implementation [INFO] [stdout] ... [INFO] [stdout] 107 | pub(crate) fn get_name(&self) -> &str { [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] ... [INFO] [stdout] 111 | pub(crate) fn get_refid(&self) -> i32 { [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> bam_tools/src/sorting/sort.rs:464:20 [INFO] [stdout] | [INFO] [stdout] 464 | pub fn get_key(&self) -> (&KeyTuple, usize) { [INFO] [stdout] | ^^^^^ ^^^^^^^^^ [INFO] [stdout] | | || [INFO] [stdout] | | |the same lifetime is hidden here [INFO] [stdout] | | the same lifetime is elided here [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 464 | pub fn get_key(&self) -> (&KeyTuple<'_>, usize) { [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: eliding a lifetime that's named elsewhere is confusing [INFO] [stdout] --> bam_tools/src/reader/records.rs:16:58 [INFO] [stdout] | [INFO] [stdout] 16 | pub(crate) fn new(reader: &'a mut Reader) -> Records<'_> { [INFO] [stdout] | -- ^^ the same lifetime is elided here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is named here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] help: consistently use `'a` [INFO] [stdout] | [INFO] [stdout] 16 - pub(crate) fn new(reader: &'a mut Reader) -> Records<'_> { [INFO] [stdout] 16 + pub(crate) fn new(reader: &'a mut Reader) -> Records<'a> { [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `Write` [INFO] [stdout] --> gbam_tools/src/reader/column.rs:12:21 [INFO] [stdout] | [INFO] [stdout] 12 | use std::io::{Read, Write}; [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `file_meta` [INFO] [stdout] --> gbam_tools/src/query/depth.rs:65:5 [INFO] [stdout] | [INFO] [stdout] 65 | file_meta: Arc, [INFO] [stdout] | ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_file_meta` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `number_of_records` [INFO] [stdout] --> gbam_tools/src/query/depth.rs:67:5 [INFO] [stdout] | [INFO] [stdout] 67 | number_of_records: usize, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] help: if this is intentional, prefix it with an underscore [INFO] [stdout] | [INFO] [stdout] 67 | _number_of_records: usize, [INFO] [stdout] | + [INFO] [stdout] help: you might have meant to pattern match on the similarly named constant `SIZE_LIMIT` [INFO] [stdout] | [INFO] [stdout] 67 - number_of_records: usize, [INFO] [stdout] 67 + SIZE_LIMIT: usize, [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `file` [INFO] [stdout] --> gbam_tools/src/query/depth.rs:368:17 [INFO] [stdout] | [INFO] [stdout] 368 | let file = gbam_file.try_clone().unwrap(); [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_file` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `log_line` [INFO] [stdout] --> gbam_tools/src/compressor.rs:97:21 [INFO] [stdout] | [INFO] [stdout] 97 | let log_line = format!( [INFO] [stdout] | ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_log_line` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `find_leftmost_block` is never used [INFO] [stdout] --> gbam_tools/src/query/depth.rs:438:4 [INFO] [stdout] | [INFO] [stdout] 438 | fn find_leftmost_block(id: i32, block_metas: &Vec) -> Option { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `find_rightmost_block` is never used [INFO] [stdout] --> gbam_tools/src/query/depth.rs:462:4 [INFO] [stdout] | [INFO] [stdout] 462 | fn find_rightmost_block(id: i32, block_metas: &Vec) -> i64 { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> gbam_tools/src/reader/reader.rs:121:20 [INFO] [stdout] | [INFO] [stdout] 121 | pub fn records(&mut self) -> Records { [INFO] [stdout] | ^^^^^^^^^ ^^^^^^^ the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 121 | pub fn records(&mut self) -> Records<'_> { [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> gbam_tools/src/query/cigar.rs:80:16 [INFO] [stdout] | [INFO] [stdout] 80 | pub fn ops(&self) -> Iter { [INFO] [stdout] | ^^^^^ ^^^^^^^^ the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 80 | pub fn ops(&self) -> Iter<'_, Op> { [INFO] [stdout] | +++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> gbam_tools/src/writer.rs:321:23 [INFO] [stdout] | [INFO] [stdout] 321 | pub fn write_data(&mut self, data: &[u8]) -> WriteStatus { [INFO] [stdout] | ^^^^^^^^^ ^^^^^^^^^^^ the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 321 | pub fn write_data(&mut self, data: &[u8]) -> WriteStatus<'_> { [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> gbam_tools/src/writer.rs:370:27 [INFO] [stdout] | [INFO] [stdout] 370 | fn write_record_field(&mut self, rec: &BAMRawRecord) -> WriteStatus; [INFO] [stdout] | ^^^^^^^^^ ^^^^^^^^^^^ the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 370 | fn write_record_field(&mut self, rec: &BAMRawRecord) -> WriteStatus<'_>; [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> gbam_tools/src/writer.rs:388:27 [INFO] [stdout] | [INFO] [stdout] 388 | fn write_record_field(&mut self, rec: &BAMRawRecord) -> WriteStatus { [INFO] [stdout] | ^^^^^^^^^ ^^^^^^^^^^^ the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 388 | fn write_record_field(&mut self, rec: &BAMRawRecord) -> WriteStatus<'_> { [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> gbam_tools/src/writer.rs:426:27 [INFO] [stdout] | [INFO] [stdout] 426 | fn write_record_field(&mut self, rec: &BAMRawRecord) -> WriteStatus { [INFO] [stdout] | ^^^^^^^^^ ^^^^^^^^^^^ the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 426 | fn write_record_field(&mut self, rec: &BAMRawRecord) -> WriteStatus<'_> { [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 1.95s [INFO] running `Command { std: "docker" "inspect" "631f8dabb17714a8135391d540b4dccd4e26933be6d745235f994beeae5a0ad0", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "631f8dabb17714a8135391d540b4dccd4e26933be6d745235f994beeae5a0ad0", kill_on_drop: false }` [INFO] [stdout] 631f8dabb17714a8135391d540b4dccd4e26933be6d745235f994beeae5a0ad0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 40e2b2072106b5692b2666a4a33891d84cc1884f877558fd9c52d2a7e20f1850 [INFO] running `Command { std: "docker" "start" "-a" "40e2b2072106b5692b2666a4a33891d84cc1884f877558fd9c52d2a7e20f1850", kill_on_drop: false }` [INFO] [stderr] warning: field `track_progress` is never read [INFO] [stderr] --> bam_tools/src/reader.rs:22:5 [INFO] [stderr] | [INFO] [stderr] 17 | pub struct Reader { [INFO] [stderr] | ------ field in this struct [INFO] [stderr] ... [INFO] [stderr] 22 | track_progress: Option, [INFO] [stderr] | ^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stderr] [INFO] [stderr] warning: methods `get_name` and `get_refid` are never used [INFO] [stderr] --> bam_tools/src/record/bamrawrecord.rs:107:19 [INFO] [stderr] | [INFO] [stderr] 15 | impl<'a> BAMRawRecord<'a> { [INFO] [stderr] | ------------------------- methods in this implementation [INFO] [stderr] ... [INFO] [stderr] 107 | pub(crate) fn get_name(&self) -> &str { [INFO] [stderr] | ^^^^^^^^ [INFO] [stderr] ... [INFO] [stderr] 111 | pub(crate) fn get_refid(&self) -> i32 { [INFO] [stderr] | ^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stderr] --> bam_tools/src/sorting/sort.rs:464:20 [INFO] [stderr] | [INFO] [stderr] 464 | pub fn get_key(&self) -> (&KeyTuple, usize) { [INFO] [stderr] | ^^^^^ ^^^^^^^^^ [INFO] [stderr] | | || [INFO] [stderr] | | |the same lifetime is hidden here [INFO] [stderr] | | the same lifetime is elided here [INFO] [stderr] | the lifetime is elided here [INFO] [stderr] | [INFO] [stderr] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stderr] = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default [INFO] [stderr] help: use `'_` for type paths [INFO] [stderr] | [INFO] [stderr] 464 | pub fn get_key(&self) -> (&KeyTuple<'_>, usize) { [INFO] [stderr] | ++++ [INFO] [stderr] [INFO] [stderr] warning: eliding a lifetime that's named elsewhere is confusing [INFO] [stderr] --> bam_tools/src/reader/records.rs:16:58 [INFO] [stderr] | [INFO] [stderr] 16 | pub(crate) fn new(reader: &'a mut Reader) -> Records<'_> { [INFO] [stderr] | -- ^^ the same lifetime is elided here [INFO] [stderr] | | [INFO] [stderr] | the lifetime is named here [INFO] [stderr] | [INFO] [stderr] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stderr] help: consistently use `'a` [INFO] [stderr] | [INFO] [stderr] 16 - pub(crate) fn new(reader: &'a mut Reader) -> Records<'_> { [INFO] [stderr] 16 + pub(crate) fn new(reader: &'a mut Reader) -> Records<'a> { [INFO] [stderr] | [INFO] [stderr] [INFO] [stderr] warning: `bam_tools` (lib) generated 4 warnings (run `cargo fix --lib -p bam_tools` to apply 2 suggestions) [INFO] [stderr] warning: unexpected `cfg` condition value: `python-ffi` [INFO] [stderr] --> gbam_tools/src/lib.rs:28:11 [INFO] [stderr] | [INFO] [stderr] 28 | #[cfg(not(feature = "python-ffi"))] [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^ help: remove the condition [INFO] [stderr] | [INFO] [stderr] = note: no expected values for `feature` [INFO] [stderr] = help: consider adding `python-ffi` as a feature in `Cargo.toml` [INFO] [stderr] = note: see for more information about checking conditional configuration [INFO] [stderr] = note: `#[warn(unexpected_cfgs)]` on by default [INFO] [stderr] [INFO] [stderr] warning: unexpected `cfg` condition value: `python-ffi` [INFO] [stderr] --> gbam_tools/src/reader/parse_tmplt.rs:133:7 [INFO] [stderr] | [INFO] [stderr] 133 | #[cfg(feature = "python-ffi")] [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^ help: remove the condition [INFO] [stderr] | [INFO] [stderr] = note: no expected values for `feature` [INFO] [stderr] = help: consider adding `python-ffi` as a feature in `Cargo.toml` [INFO] [stderr] = note: see for more information about checking conditional configuration [INFO] [stderr] [INFO] [stderr] warning: unused imports: `Mutex` and `OnceLock` [INFO] [stderr] --> gbam_tools/src/compressor.rs:14:17 [INFO] [stderr] | [INFO] [stderr] 14 | use std::sync::{Mutex, OnceLock}; [INFO] [stderr] | ^^^^^ ^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stderr] [INFO] [stderr] warning: unused import: `std::fmt::Write as FmtWrite` [INFO] [stderr] --> gbam_tools/src/compressor.rs:15:5 [INFO] [stderr] | [INFO] [stderr] 15 | use std::fmt::Write as FmtWrite; // For formatting into String [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `bam_tools::record::fields::Fields` [INFO] [stderr] --> gbam_tools/src/compressor.rs:16:5 [INFO] [stderr] | [INFO] [stderr] 16 | use bam_tools::record::fields::Fields; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `std::fs::File` [INFO] [stderr] --> gbam_tools/src/compressor.rs:17:5 [INFO] [stderr] | [INFO] [stderr] 17 | use std::fs::File; [INFO] [stderr] | ^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `std::path::Path` [INFO] [stderr] --> gbam_tools/src/writer.rs:17:5 [INFO] [stderr] | [INFO] [stderr] 17 | use std::path::Path; [INFO] [stderr] | ^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `Write` [INFO] [stderr] --> gbam_tools/src/reader/column.rs:12:21 [INFO] [stderr] | [INFO] [stderr] 12 | use std::io::{Read, Write}; [INFO] [stderr] | ^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused variable: `file_meta` [INFO] [stderr] --> gbam_tools/src/query/depth.rs:65:5 [INFO] [stderr] | [INFO] [stderr] 65 | file_meta: Arc, [INFO] [stderr] | ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_file_meta` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default [INFO] [stderr] [INFO] [stderr] warning: unused variable: `number_of_records` [INFO] [stderr] --> gbam_tools/src/query/depth.rs:67:5 [INFO] [stderr] | [INFO] [stderr] 67 | number_of_records: usize, [INFO] [stderr] | ^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] help: if this is intentional, prefix it with an underscore [INFO] [stderr] | [INFO] [stderr] 67 | _number_of_records: usize, [INFO] [stderr] | + [INFO] [stderr] help: you might have meant to pattern match on the similarly named constant `SIZE_LIMIT` [INFO] [stderr] | [INFO] [stderr] 67 - number_of_records: usize, [INFO] [stderr] 67 + SIZE_LIMIT: usize, [INFO] [stderr] | [INFO] [stderr] [INFO] [stderr] warning: unused variable: `file` [INFO] [stderr] --> gbam_tools/src/query/depth.rs:368:17 [INFO] [stderr] | [INFO] [stderr] 368 | let file = gbam_file.try_clone().unwrap(); [INFO] [stderr] | ^^^^ help: if this is intentional, prefix it with an underscore: `_file` [INFO] [stderr] [INFO] [stderr] warning: unused variable: `log_line` [INFO] [stderr] --> gbam_tools/src/compressor.rs:97:21 [INFO] [stderr] | [INFO] [stderr] 97 | let log_line = format!( [INFO] [stderr] | ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_log_line` [INFO] [stderr] [INFO] [stderr] warning: function `find_leftmost_block` is never used [INFO] [stderr] --> gbam_tools/src/query/depth.rs:438:4 [INFO] [stderr] | [INFO] [stderr] 438 | fn find_leftmost_block(id: i32, block_metas: &Vec) -> Option { [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stderr] [INFO] [stderr] warning: function `find_rightmost_block` is never used [INFO] [stderr] --> gbam_tools/src/query/depth.rs:462:4 [INFO] [stderr] | [INFO] [stderr] 462 | fn find_rightmost_block(id: i32, block_metas: &Vec) -> i64 { [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stderr] --> gbam_tools/src/reader/reader.rs:121:20 [INFO] [stderr] | [INFO] [stderr] 121 | pub fn records(&mut self) -> Records { [INFO] [stderr] | ^^^^^^^^^ ^^^^^^^ the same lifetime is hidden here [INFO] [stderr] | | [INFO] [stderr] | the lifetime is elided here [INFO] [stderr] | [INFO] [stderr] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stderr] = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default [INFO] [stderr] help: use `'_` for type paths [INFO] [stderr] | [INFO] [stderr] 121 | pub fn records(&mut self) -> Records<'_> { [INFO] [stderr] | ++++ [INFO] [stderr] [INFO] [stderr] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stderr] --> gbam_tools/src/query/cigar.rs:80:16 [INFO] [stderr] | [INFO] [stderr] 80 | pub fn ops(&self) -> Iter { [INFO] [stderr] | ^^^^^ ^^^^^^^^ the same lifetime is hidden here [INFO] [stderr] | | [INFO] [stderr] | the lifetime is elided here [INFO] [stderr] | [INFO] [stderr] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stderr] help: use `'_` for type paths [INFO] [stderr] | [INFO] [stderr] 80 | pub fn ops(&self) -> Iter<'_, Op> { [INFO] [stderr] | +++ [INFO] [stderr] [INFO] [stderr] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stderr] --> gbam_tools/src/writer.rs:321:23 [INFO] [stderr] | [INFO] [stderr] 321 | pub fn write_data(&mut self, data: &[u8]) -> WriteStatus { [INFO] [stderr] | ^^^^^^^^^ ^^^^^^^^^^^ the same lifetime is hidden here [INFO] [stderr] | | [INFO] [stderr] | the lifetime is elided here [INFO] [stderr] | [INFO] [stderr] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stderr] help: use `'_` for type paths [INFO] [stderr] | [INFO] [stderr] 321 | pub fn write_data(&mut self, data: &[u8]) -> WriteStatus<'_> { [INFO] [stderr] | ++++ [INFO] [stderr] [INFO] [stderr] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stderr] --> gbam_tools/src/writer.rs:370:27 [INFO] [stderr] | [INFO] [stderr] 370 | fn write_record_field(&mut self, rec: &BAMRawRecord) -> WriteStatus; [INFO] [stderr] | ^^^^^^^^^ ^^^^^^^^^^^ the same lifetime is hidden here [INFO] [stderr] | | [INFO] [stderr] | the lifetime is elided here [INFO] [stderr] | [INFO] [stderr] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stderr] help: use `'_` for type paths [INFO] [stderr] | [INFO] [stderr] 370 | fn write_record_field(&mut self, rec: &BAMRawRecord) -> WriteStatus<'_>; [INFO] [stderr] | ++++ [INFO] [stderr] [INFO] [stderr] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stderr] --> gbam_tools/src/writer.rs:388:27 [INFO] [stderr] | [INFO] [stderr] 388 | fn write_record_field(&mut self, rec: &BAMRawRecord) -> WriteStatus { [INFO] [stderr] | ^^^^^^^^^ ^^^^^^^^^^^ the same lifetime is hidden here [INFO] [stderr] | | [INFO] [stderr] | the lifetime is elided here [INFO] [stderr] | [INFO] [stderr] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stderr] help: use `'_` for type paths [INFO] [stderr] | [INFO] [stderr] 388 | fn write_record_field(&mut self, rec: &BAMRawRecord) -> WriteStatus<'_> { [INFO] [stderr] | ++++ [INFO] [stderr] [INFO] [stderr] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stderr] --> gbam_tools/src/writer.rs:426:27 [INFO] [stderr] | [INFO] [stderr] 426 | fn write_record_field(&mut self, rec: &BAMRawRecord) -> WriteStatus { [INFO] [stderr] | ^^^^^^^^^ ^^^^^^^^^^^ the same lifetime is hidden here [INFO] [stderr] | | [INFO] [stderr] | the lifetime is elided here [INFO] [stderr] | [INFO] [stderr] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stderr] help: use `'_` for type paths [INFO] [stderr] | [INFO] [stderr] 426 | fn write_record_field(&mut self, rec: &BAMRawRecord) -> WriteStatus<'_> { [INFO] [stderr] | ++++ [INFO] [stderr] [INFO] [stderr] warning: `gbam_tools` (lib) generated 20 warnings (run `cargo fix --lib -p gbam_tools` to apply 12 suggestions) [INFO] [stderr] warning: `gbam_tools` (lib test) generated 20 warnings (20 duplicates) [INFO] [stderr] warning: `bam_tools` (lib test) generated 4 warnings (4 duplicates) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.20s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/bam_tools-dbca2249dc126b26) [INFO] [stdout] [INFO] [stdout] running 13 tests [INFO] [stdout] test block::tests::test_data_mut ... ok [INFO] [stdout] test block::tests::test_virtual_position ... ok [INFO] [stdout] test sorting::flags::tests::test_contains ... ok [INFO] [stdout] test block::tests::test_is_eof ... ok [INFO] [stdout] test sorting::flags::tests::test_default ... ok [INFO] [stdout] test block::tests::test_set_len ... ok [INFO] [stdout] test sorting::flags::tests::test_from_u16_for_flags ... ok [INFO] [stdout] test sorting::flags::tests::test_from_flags_for_u16 ... ok [INFO] [stdout] test virtual_position::tests::test_from_u64_for_virtual_position ... ok [INFO] [stdout] test block::tests::test_set_position ... ok [INFO] [stdout] test virtual_position::tests::test_from_virtual_position_for_u64 ... ok [INFO] [stdout] test virtual_position::tests::test_try_from_u64_u16_tuple_for_virtual_position ... ok [INFO] [stdout] test virtual_position::tests::test_from_virtual_position_for_u64_u16_tuple ... ok [INFO] [stderr] Running unittests src/main.rs (/opt/rustwide/target/debug/deps/gbam_binary-1436f903bce60cfb) [INFO] [stdout] [INFO] [stdout] test result: ok. 13 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.18s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 9 tests [INFO] [stdout] test tests::test_parse_tag_with_empty_tags ... ok [INFO] [stdout] test tests::test_parse_tag_with_empty_target_tag ... ok [INFO] [stdout] test tests::test_parse_tag_with_exact_match ... ok [INFO] [stdout] test tests::test_parse_tag_with_longer_tag ... ok [INFO] [stdout] test tests::test_parse_tag_with_multiple_tags ... ok [INFO] [stdout] test tests::test_parse_tag_with_no_null_terminator ... ok [INFO] [stdout] test tests::test_parse_tag_with_nonexistent_tag ... ok [INFO] [stdout] test tests::test_parse_tag_with_null_terminator_at_end ... ok [INFO] [stdout] test tests::test_parse_tag_with_partial_tag_match ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 9 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s [INFO] [stdout] [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/gbam_tools-59d3cbc8caa4b6b6) [INFO] [stdout] [INFO] [stdout] running 2 tests [INFO] [stdout] test utils::bed::tests::test_region_query ... ok [INFO] [stdout] test utils::bed::tests::test_bed_reader ... FAILED [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] [INFO] [stdout] ---- utils::bed::tests::test_bed_reader stdout ---- [INFO] [stdout] [INFO] [stdout] thread 'utils::bed::tests::test_bed_reader' (48) panicked at gbam_tools/src/utils/bed.rs:112:42: [INFO] [stdout] called `Result::unwrap()` on an `Err` value: Kind(InvalidData) [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x58cc9bc11952 - std::backtrace_rs::backtrace::libunwind::trace::h52580dd202462214 [INFO] [stdout] at /rustc/ad85bc524b1ad696e42061ad8338d382dffbdbe5/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9 [INFO] [stdout] 1: 0x58cc9bc11952 - std::backtrace_rs::backtrace::trace_unsynchronized::hc969519abce0f52b [INFO] [stdout] at /rustc/ad85bc524b1ad696e42061ad8338d382dffbdbe5/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14 [INFO] [stdout] 2: 0x58cc9bc11952 - std::sys::backtrace::_print_fmt::hfd5825900b6e0030 [INFO] [stdout] at /rustc/ad85bc524b1ad696e42061ad8338d382dffbdbe5/library/std/src/sys/backtrace.rs:66:9 [INFO] [stdout] 3: 0x58cc9bc11952 - ::fmt::h427144ad75cfb218 [INFO] [stdout] at /rustc/ad85bc524b1ad696e42061ad8338d382dffbdbe5/library/std/src/sys/backtrace.rs:39:26 [INFO] [stdout] 4: 0x58cc9bc21c2f - core::fmt::rt::Argument::fmt::hd5ccc9cf97cea7f7 [INFO] [stdout] at /rustc/ad85bc524b1ad696e42061ad8338d382dffbdbe5/library/core/src/fmt/rt.rs:173:76 [INFO] [stdout] 5: 0x58cc9bc21c2f - core::fmt::write::h593aaf5adf0f5dae [INFO] [stdout] at /rustc/ad85bc524b1ad696e42061ad8338d382dffbdbe5/library/core/src/fmt/mod.rs:1468:25 [INFO] [stdout] 6: 0x58cc9bbdef31 - std::io::default_write_fmt::h305b5a0727055346 [INFO] [stdout] at /rustc/ad85bc524b1ad696e42061ad8338d382dffbdbe5/library/std/src/io/mod.rs:639:11 [INFO] [stdout] 7: 0x58cc9bbdef31 - std::io::Write::write_fmt::h76f14a8a88733dc5 [INFO] [stdout] at /rustc/ad85bc524b1ad696e42061ad8338d382dffbdbe5/library/std/src/io/mod.rs:1954:13 [INFO] [stdout] 8: 0x58cc9bbeae92 - std::sys::backtrace::BacktraceLock::print::h3953113552dca3ca [INFO] [stdout] at /rustc/ad85bc524b1ad696e42061ad8338d382dffbdbe5/library/std/src/sys/backtrace.rs:42:9 [INFO] [stdout] 9: 0x58cc9bbef9df - std::panicking::default_hook::{{closure}}::h486b96ad75eafbb8 [INFO] [stdout] at /rustc/ad85bc524b1ad696e42061ad8338d382dffbdbe5/library/std/src/panicking.rs:301:27 [INFO] [stdout] 10: 0x58cc9bbef871 - std::panicking::default_hook::h99456317c5a1a20c [INFO] [stdout] at /rustc/ad85bc524b1ad696e42061ad8338d382dffbdbe5/library/std/src/panicking.rs:325:9 [INFO] [stdout] 11: 0x58cc9bba290e - as core::ops::function::Fn>::call::h441e4551014e4cf8 [INFO] [stdout] at /rustc/ad85bc524b1ad696e42061ad8338d382dffbdbe5/library/alloc/src/boxed.rs:1999:9 [INFO] [stdout] 12: 0x58cc9bba290e - test::test_main_with_exit_callback::{{closure}}::hdbca54e17f1a00e4 [INFO] [stdout] at /rustc/ad85bc524b1ad696e42061ad8338d382dffbdbe5/library/test/src/lib.rs:145:21 [INFO] [stdout] 13: 0x58cc9bbf009f - as core::ops::function::Fn>::call::h1e57b72c4e1d3045 [INFO] [stdout] at /rustc/ad85bc524b1ad696e42061ad8338d382dffbdbe5/library/alloc/src/boxed.rs:1999:9 [INFO] [stdout] 14: 0x58cc9bbf009f - std::panicking::panic_with_hook::h67ab0df20212e4ea [INFO] [stdout] at /rustc/ad85bc524b1ad696e42061ad8338d382dffbdbe5/library/std/src/panicking.rs:842:13 [INFO] [stdout] 15: 0x58cc9bbefefa - std::panicking::panic_handler::{{closure}}::hc9e4a933ae92e208 [INFO] [stdout] at /rustc/ad85bc524b1ad696e42061ad8338d382dffbdbe5/library/std/src/panicking.rs:707:13 [INFO] [stdout] 16: 0x58cc9bbeafc9 - std::sys::backtrace::__rust_end_short_backtrace::hbfa72df9b68c2d19 [INFO] [stdout] at /rustc/ad85bc524b1ad696e42061ad8338d382dffbdbe5/library/std/src/sys/backtrace.rs:174:18 [INFO] [stdout] 17: 0x58cc9bbd31dd - __rustc[8cce077e14951490]::rust_begin_unwind [INFO] [stdout] at /rustc/ad85bc524b1ad696e42061ad8338d382dffbdbe5/library/std/src/panicking.rs:698:5 [INFO] [stdout] 18: 0x58cc9bc29560 - core::panicking::panic_fmt::h49931053d20abf41 [INFO] [stdout] at /rustc/ad85bc524b1ad696e42061ad8338d382dffbdbe5/library/core/src/panicking.rs:75:14 [INFO] [stdout] 19: 0x58cc9bc28d46 - core::result::unwrap_failed::h7f5a2d4cf85d933f [INFO] [stdout] at /rustc/ad85bc524b1ad696e42061ad8338d382dffbdbe5/library/core/src/result.rs:1854:5 [INFO] [stdout] 20: 0x58cc9bb7e634 - core::result::Result::unwrap::ha2c93549963ff57f [INFO] [stdout] at /rustc/ad85bc524b1ad696e42061ad8338d382dffbdbe5/library/core/src/result.rs:1225:23 [INFO] [stdout] 21: 0x58cc9bb7e634 - gbam_tools::utils::bed::tests::test_bed_reader::hb1bfb8b589f3f0c5 [INFO] [stdout] at /opt/rustwide/workdir/gbam_tools/src/utils/bed.rs:112:42 [INFO] [stdout] 22: 0x58cc9bb7e957 - gbam_tools::utils::bed::tests::test_bed_reader::{{closure}}::h906581dcc5dbd17d [INFO] [stdout] at /opt/rustwide/workdir/gbam_tools/src/utils/bed.rs:106:25 [INFO] [stdout] 23: 0x58cc9bb803d6 - core::ops::function::FnOnce::call_once::hd0aabb064813596b [INFO] [stdout] at /rustc/ad85bc524b1ad696e42061ad8338d382dffbdbe5/library/core/src/ops/function.rs:253:5 [INFO] [stdout] 24: 0x58cc9bba26cb - core::ops::function::FnOnce::call_once::h5d9016d521f5aee4 [INFO] [stdout] at /rustc/ad85bc524b1ad696e42061ad8338d382dffbdbe5/library/core/src/ops/function.rs:253:5 [INFO] [stdout] 25: 0x58cc9bba26cb - test::__rust_begin_short_backtrace::h123fcee610330442 [INFO] [stdout] at /rustc/ad85bc524b1ad696e42061ad8338d382dffbdbe5/library/test/src/lib.rs:663:18 [INFO] [stdout] 26: 0x58cc9bbb81b5 - test::run_test_in_process::{{closure}}::h0442efda2e6359b2 [INFO] [stdout] at /rustc/ad85bc524b1ad696e42061ad8338d382dffbdbe5/library/test/src/lib.rs:686:74 [INFO] [stdout] 27: 0x58cc9bbb81b5 - as core::ops::function::FnOnce<()>>::call_once::hfe3528c8dd09682c [INFO] [stdout] at /rustc/ad85bc524b1ad696e42061ad8338d382dffbdbe5/library/core/src/panic/unwind_safe.rs:274:9 [INFO] [stdout] 28: 0x58cc9bbb81b5 - std::panicking::catch_unwind::do_call::hb1659f7844fe8531 [INFO] [stdout] at /rustc/ad85bc524b1ad696e42061ad8338d382dffbdbe5/library/std/src/panicking.rs:590:40 [INFO] [stdout] 29: 0x58cc9bbb81b5 - std::panicking::catch_unwind::hdc1f4be0019e72ad [INFO] [stdout] at /rustc/ad85bc524b1ad696e42061ad8338d382dffbdbe5/library/std/src/panicking.rs:553:19 [INFO] [stdout] 30: 0x58cc9bbb81b5 - std::panic::catch_unwind::hd6d7ccfa4513e770 [INFO] [stdout] at /rustc/ad85bc524b1ad696e42061ad8338d382dffbdbe5/library/std/src/panic.rs:359:14 [INFO] [stdout] 31: 0x58cc9bbb81b5 - test::run_test_in_process::h6bbb839ed0802366 [INFO] [stdout] at /rustc/ad85bc524b1ad696e42061ad8338d382dffbdbe5/library/test/src/lib.rs:686:27 [INFO] [stdout] 32: 0x58cc9bbb81b5 - test::run_test::{{closure}}::he4fad7398c8acc11 [INFO] [stdout] at /rustc/ad85bc524b1ad696e42061ad8338d382dffbdbe5/library/test/src/lib.rs:607:43 [INFO] [stdout] 33: 0x58cc9bb8eb24 - test::run_test::{{closure}}::h41975797e198d26c [INFO] [stdout] at /rustc/ad85bc524b1ad696e42061ad8338d382dffbdbe5/library/test/src/lib.rs:637:41 [INFO] [stdout] 34: 0x58cc9bb8eb24 - std::sys::backtrace::__rust_begin_short_backtrace::hfb46c397857336f1 [INFO] [stdout] at /rustc/ad85bc524b1ad696e42061ad8338d382dffbdbe5/library/std/src/sys/backtrace.rs:158:18 [INFO] [stdout] 35: 0x58cc9bb924ca - std::thread::Builder::spawn_unchecked_::{{closure}}::{{closure}}::hddf826a64f532bea [INFO] [stdout] at /rustc/ad85bc524b1ad696e42061ad8338d382dffbdbe5/library/std/src/thread/mod.rs:559:17 [INFO] [stdout] 36: 0x58cc9bb924ca - as core::ops::function::FnOnce<()>>::call_once::hc3518c3eab91aeb3 [INFO] [stdout] at /rustc/ad85bc524b1ad696e42061ad8338d382dffbdbe5/library/core/src/panic/unwind_safe.rs:274:9 [INFO] [stdout] 37: 0x58cc9bb924ca - std::panicking::catch_unwind::do_call::h7bf3ad6dc012415a [INFO] [stdout] at /rustc/ad85bc524b1ad696e42061ad8338d382dffbdbe5/library/std/src/panicking.rs:590:40 [INFO] [stdout] 38: 0x58cc9bb924ca - std::panicking::catch_unwind::h8b88f0375c767e36 [INFO] [stdout] at /rustc/ad85bc524b1ad696e42061ad8338d382dffbdbe5/library/std/src/panicking.rs:553:19 [INFO] [stdout] 39: 0x58cc9bb924ca - std::panic::catch_unwind::h66cb5d61a90f7bc5 [INFO] [stdout] at /rustc/ad85bc524b1ad696e42061ad8338d382dffbdbe5/library/std/src/panic.rs:359:14 [INFO] [stdout] 40: 0x58cc9bb924ca - std::thread::Builder::spawn_unchecked_::{{closure}}::h65bc9d15fb966bbd [INFO] [stdout] at /rustc/ad85bc524b1ad696e42061ad8338d382dffbdbe5/library/std/src/thread/mod.rs:557:30 [INFO] [stdout] 41: 0x58cc9bb924ca - core::ops::function::FnOnce::call_once{{vtable.shim}}::he8d2c9a8796342e5 [INFO] [stdout] at /rustc/ad85bc524b1ad696e42061ad8338d382dffbdbe5/library/core/src/ops/function.rs:253:5 [INFO] [stdout] 42: 0x58cc9bbe50ff - as core::ops::function::FnOnce>::call_once::hef12b47e5c033835 [INFO] [stdout] at /rustc/ad85bc524b1ad696e42061ad8338d382dffbdbe5/library/alloc/src/boxed.rs:1985:9 [INFO] [stdout] 43: 0x58cc9bbe50ff - std::sys::pal::unix::thread::Thread::new::thread_start::h135087e7c97657bc [INFO] [stdout] at /rustc/ad85bc524b1ad696e42061ad8338d382dffbdbe5/library/std/src/sys/pal/unix/thread.rs:118:17 [INFO] [stdout] 44: 0x7d2a71e1faa4 - [INFO] [stdout] 45: 0x7d2a71eaca34 - clone [INFO] [stdout] 46: 0x0 - [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] utils::bed::tests::test_bed_reader [INFO] [stdout] [INFO] [stdout] test result: FAILED. 1 passed; 1 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.10s [INFO] [stdout] [INFO] [stderr] error: test failed, to rerun pass `-p gbam_tools --lib` [INFO] running `Command { std: "docker" "inspect" "40e2b2072106b5692b2666a4a33891d84cc1884f877558fd9c52d2a7e20f1850", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "40e2b2072106b5692b2666a4a33891d84cc1884f877558fd9c52d2a7e20f1850", kill_on_drop: false }` [INFO] [stdout] 40e2b2072106b5692b2666a4a33891d84cc1884f877558fd9c52d2a7e20f1850