[INFO] cloning repository https://github.com/KHajji/distle [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/KHajji/distle" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FKHajji%2Fdistle", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FKHajji%2Fdistle'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 69ce0603382f7835d0e0e7f9baa1da7e81a28c38 [INFO] testing KHajji/distle against master#ad85bc524b1ad696e42061ad8338d382dffbdbe5 for pr-146237 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FKHajji%2Fdistle" "/workspace/builds/worker-2-tc1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-2-tc1/source'... [INFO] [stderr] done. [INFO] started tweaking git repo https://github.com/KHajji/distle [INFO] finished tweaking git repo https://github.com/KHajji/distle [INFO] tweaked toml for git repo https://github.com/KHajji/distle written to /workspace/builds/worker-2-tc1/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/KHajji/distle on toolchain ad85bc524b1ad696e42061ad8338d382dffbdbe5 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/KHajji/distle already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded strum v0.25.0 [INFO] [stderr] Downloaded env_logger v0.11.3 [INFO] [stderr] Downloaded itertools-num v0.1.3 [INFO] [stderr] Downloaded newtype_derive v0.1.6 [INFO] [stderr] Downloaded derive-new v0.5.9 [INFO] [stderr] Downloaded custom_derive v0.1.7 [INFO] [stderr] Downloaded editdistancek v1.0.2 [INFO] [stderr] Downloaded bio-types v1.0.1 [INFO] [stderr] Downloaded multimap v0.9.1 [INFO] [stderr] Downloaded bytemuck v1.15.0 [INFO] [stderr] Downloaded safe_arch v0.7.1 [INFO] [stderr] Downloaded wide v0.7.16 [INFO] [stderr] Downloaded triple_accel v0.4.0 [INFO] [stderr] Downloaded statrs v0.16.0 [INFO] [stderr] Downloaded bio v1.6.0 [INFO] [stderr] Downloaded semver v0.1.20 [INFO] [stderr] Downloaded rustc_version v0.1.7 [INFO] [stderr] Downloaded strum_macros v0.25.3 [INFO] [stderr] Downloaded num-complex v0.4.5 [INFO] [stderr] Downloaded rustversion v1.0.15 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] b59045ff34d49764546ccdbbbdf50b402950763b71c75646a826dd1dae0740a3 [INFO] running `Command { std: "docker" "start" "-a" "b59045ff34d49764546ccdbbbdf50b402950763b71c75646a826dd1dae0740a3", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "b59045ff34d49764546ccdbbbdf50b402950763b71c75646a826dd1dae0740a3", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "b59045ff34d49764546ccdbbbdf50b402950763b71c75646a826dd1dae0740a3", kill_on_drop: false }` [INFO] [stdout] b59045ff34d49764546ccdbbbdf50b402950763b71c75646a826dd1dae0740a3 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 5723e8aeebec74ad34971c4a8cd555cc61e5b89002f8760a10f4b4faeb3e84ca [INFO] running `Command { std: "docker" "start" "-a" "5723e8aeebec74ad34971c4a8cd555cc61e5b89002f8760a10f4b4faeb3e84ca", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.81 [INFO] [stderr] Compiling autocfg v1.2.0 [INFO] [stderr] Compiling libm v0.2.8 [INFO] [stderr] Compiling memchr v2.7.2 [INFO] [stderr] Compiling syn v1.0.109 [INFO] [stderr] Compiling serde v1.0.198 [INFO] [stderr] Compiling bytemuck v1.15.0 [INFO] [stderr] Compiling regex-syntax v0.8.3 [INFO] [stderr] Compiling utf8parse v0.2.1 [INFO] [stderr] Compiling rustversion v1.0.15 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling rawpointer v0.2.1 [INFO] [stderr] Compiling getrandom v0.2.14 [INFO] [stderr] Compiling thiserror v1.0.59 [INFO] [stderr] Compiling colorchoice v1.0.0 [INFO] [stderr] Compiling anstyle v1.0.6 [INFO] [stderr] Compiling anstyle-query v1.0.2 [INFO] [stderr] Compiling anstyle-parse v0.2.3 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Compiling either v1.11.0 [INFO] [stderr] Compiling safe_arch v0.7.1 [INFO] [stderr] Compiling anyhow v1.0.82 [INFO] [stderr] Compiling heck v0.4.1 [INFO] [stderr] Compiling num-traits v0.2.18 [INFO] [stderr] Compiling matrixmultiply v0.3.8 [INFO] [stderr] Compiling rand_core v0.6.4 [INFO] [stderr] Compiling num-rational v0.4.1 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Compiling anstream v0.6.13 [INFO] [stderr] Compiling aho-corasick v1.1.3 [INFO] [stderr] Compiling rand_chacha v0.3.1 [INFO] [stderr] Compiling wide v0.7.16 [INFO] [stderr] Compiling quote v1.0.36 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling csv-core v0.1.11 [INFO] [stderr] Compiling indexmap v2.2.6 [INFO] [stderr] Compiling heck v0.5.0 [INFO] [stderr] Compiling clap_lex v0.7.0 [INFO] [stderr] Compiling syn v2.0.60 [INFO] [stderr] Compiling rand v0.8.5 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling ryu v1.0.17 [INFO] [stderr] Compiling strsim v0.11.1 [INFO] [stderr] Compiling fixedbitset v0.4.2 [INFO] [stderr] Compiling bit-vec v0.6.3 [INFO] [stderr] Compiling log v0.4.21 [INFO] [stderr] Compiling clap_builder v4.5.2 [INFO] [stderr] Compiling bit-set v0.5.3 [INFO] [stderr] Compiling fxhash v0.2.1 [INFO] [stderr] Compiling itertools v0.11.0 [INFO] [stderr] Compiling triple_accel v0.4.0 [INFO] [stderr] Compiling bytecount v0.6.8 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling editdistancek v1.0.2 [INFO] [stderr] Compiling strum v0.25.0 [INFO] [stderr] Compiling rayon v1.10.0 [INFO] [stderr] Compiling num-integer v0.1.46 [INFO] [stderr] Compiling num-complex v0.4.5 [INFO] [stderr] Compiling approx v0.5.1 [INFO] [stderr] Compiling rand_distr v0.4.3 [INFO] [stderr] Compiling petgraph v0.6.4 [INFO] [stderr] Compiling itertools-num v0.1.3 [INFO] [stderr] Compiling ordered-float v3.9.2 [INFO] [stderr] Compiling simba v0.6.0 [INFO] [stderr] Compiling ndarray v0.15.6 [INFO] [stderr] Compiling regex-automata v0.4.6 [INFO] [stderr] Compiling nalgebra-macros v0.1.0 [INFO] [stderr] Compiling derive-new v0.5.9 [INFO] [stderr] Compiling regex v1.10.4 [INFO] [stderr] Compiling serde_derive v1.0.198 [INFO] [stderr] Compiling thiserror-impl v1.0.59 [INFO] [stderr] Compiling enum-map-derive v0.17.0 [INFO] [stderr] Compiling strum_macros v0.25.3 [INFO] [stderr] Compiling clap_derive v4.5.4 [INFO] [stderr] Compiling env_filter v0.1.0 [INFO] [stderr] Compiling env_logger v0.11.3 [INFO] [stderr] Compiling enum-map v2.7.3 [INFO] [stderr] Compiling clap v4.5.4 [INFO] [stderr] Compiling bio-types v1.0.1 [INFO] [stderr] Compiling nalgebra v0.29.0 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling multimap v0.9.1 [INFO] [stderr] Compiling csv v1.3.0 [INFO] [stderr] Compiling statrs v0.16.0 [INFO] [stderr] Compiling bio v1.6.0 [INFO] [stderr] Compiling distle v0.3.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 54.28s [INFO] running `Command { std: "docker" "inspect" "5723e8aeebec74ad34971c4a8cd555cc61e5b89002f8760a10f4b4faeb3e84ca", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "5723e8aeebec74ad34971c4a8cd555cc61e5b89002f8760a10f4b4faeb3e84ca", kill_on_drop: false }` [INFO] [stdout] 5723e8aeebec74ad34971c4a8cd555cc61e5b89002f8760a10f4b4faeb3e84ca [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] d759143ff7e6701e5251717fd372593df676281e8401f61693f293227f43bf02 [INFO] running `Command { std: "docker" "start" "-a" "d759143ff7e6701e5251717fd372593df676281e8401f61693f293227f43bf02", kill_on_drop: false }` [INFO] [stderr] Compiling distle v0.3.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 2.36s [INFO] running `Command { std: "docker" "inspect" "d759143ff7e6701e5251717fd372593df676281e8401f61693f293227f43bf02", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "d759143ff7e6701e5251717fd372593df676281e8401f61693f293227f43bf02", kill_on_drop: false }` [INFO] [stdout] d759143ff7e6701e5251717fd372593df676281e8401f61693f293227f43bf02 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 7dcfc6b3d4dd90d4f7cbca53fb6ef49c269741f43996cc88a651175739021f8b [INFO] running `Command { std: "docker" "start" "-a" "7dcfc6b3d4dd90d4f7cbca53fb6ef49c269741f43996cc88a651175739021f8b", kill_on_drop: false }` [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.11s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/distle-ab3ab16f613f0e4e) [INFO] [stdout] [INFO] [stdout] running 9 tests [INFO] [stdout] test processing::tests::test_compute_distance_eq_for_chewbbaca ... ok [INFO] [stdout] test processing::tests::test_compute_distance_eq_for_chewbbaca_hash ... ok [INFO] [stdout] test types::tests::test_chewbbaca_integer ... ok [INFO] [stdout] test types::tests::test_nucleotide ... ok [INFO] [stdout] test processing::tests::test_compute_distance_eq_for_fasta_all ... ok [INFO] [stdout] test types::tests::test_nucleotide_all ... ok [INFO] [stdout] test processing::tests::test_compute_distance_eq ... ok [INFO] [stdout] test processing::tests::test_compute_distance_eq_for_fasta ... ok [INFO] [stdout] test types::tests::test_sha1_hash ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 9 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.02s [INFO] [stdout] [INFO] [stderr] Running unittests src/main.rs (/opt/rustwide/target/debug/deps/distle-476b583c843020eb) [INFO] [stdout] [INFO] [stdout] running 9 tests [INFO] [stdout] test processing::tests::test_compute_distance_eq_for_chewbbaca_hash ... ok [INFO] [stdout] test processing::tests::test_compute_distance_eq_for_chewbbaca ... ok [INFO] [stdout] test processing::tests::test_compute_distance_eq ... ok [INFO] [stdout] test processing::tests::test_compute_distance_eq_for_fasta ... ok [INFO] [stdout] test processing::tests::test_compute_distance_eq_for_fasta_all ... ok [INFO] [stdout] test types::tests::test_chewbbaca_integer ... ok [INFO] [stdout] test types::tests::test_nucleotide ... ok [INFO] [stdout] test types::tests::test_nucleotide_all ... ok [INFO] [stdout] test types::tests::test_sha1_hash ... ok [INFO] [stdout] [INFO] [stderr] Running tests/test_output_formats.rs (/opt/rustwide/target/debug/deps/test_output_formats-1258330b28fc1a31) [INFO] [stdout] test result: ok. 9 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 7 tests [INFO] [stdout] test test_input_cgmlst_hash ... ok [INFO] [stdout] test test_input_cgmlst_hash_full ... ok [INFO] [stdout] test test_output_long ... ok [INFO] [stdout] test test_output_phylip_full ... ok [INFO] [stdout] test test_output_phylip ... ok [INFO] [stdout] test test_remove_identical ... ok [INFO] [stdout] test test_output_long_all ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 7 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s [INFO] [stdout] [INFO] [stderr] Doc-tests distle [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "7dcfc6b3d4dd90d4f7cbca53fb6ef49c269741f43996cc88a651175739021f8b", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "7dcfc6b3d4dd90d4f7cbca53fb6ef49c269741f43996cc88a651175739021f8b", kill_on_drop: false }` [INFO] [stdout] 7dcfc6b3d4dd90d4f7cbca53fb6ef49c269741f43996cc88a651175739021f8b