[INFO] cloning repository https://github.com/Benoitdw/kmer_count [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/Benoitdw/kmer_count" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FBenoitdw%2Fkmer_count", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FBenoitdw%2Fkmer_count'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 143a0b4fbfdd791dbdba84c98f524c302490a588 [INFO] testing Benoitdw/kmer_count against master#ad85bc524b1ad696e42061ad8338d382dffbdbe5 for pr-146237 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FBenoitdw%2Fkmer_count" "/workspace/builds/worker-7-tc1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-7-tc1/source'... [INFO] [stderr] done. [INFO] started tweaking git repo https://github.com/Benoitdw/kmer_count [INFO] finished tweaking git repo https://github.com/Benoitdw/kmer_count [INFO] tweaked toml for git repo https://github.com/Benoitdw/kmer_count written to /workspace/builds/worker-7-tc1/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/Benoitdw/kmer_count on toolchain ad85bc524b1ad696e42061ad8338d382dffbdbe5 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/Benoitdw/kmer_count already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded newtype_derive v0.1.6 [INFO] [stderr] Downloaded enum-map-derive v0.6.0 [INFO] [stderr] Downloaded rustc_version v0.1.7 [INFO] [stderr] Downloaded getset v0.1.3 [INFO] [stderr] Downloaded enum-map v1.1.1 [INFO] [stderr] Downloaded semver v0.1.20 [INFO] [stderr] Downloaded derive-new v0.6.0 [INFO] [stderr] Downloaded itertools-num v0.1.3 [INFO] [stderr] Downloaded triple_accel v0.4.0 [INFO] [stderr] Downloaded bio-types v1.0.4 [INFO] [stderr] Downloaded bio v0.42.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] cd1fd909cf97223a6b52213f33dc14d6e9de1f2a96510c17b5d9c91c7ba5e464 [INFO] running `Command { std: "docker" "start" "-a" "cd1fd909cf97223a6b52213f33dc14d6e9de1f2a96510c17b5d9c91c7ba5e464", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "cd1fd909cf97223a6b52213f33dc14d6e9de1f2a96510c17b5d9c91c7ba5e464", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "cd1fd909cf97223a6b52213f33dc14d6e9de1f2a96510c17b5d9c91c7ba5e464", kill_on_drop: false }` [INFO] [stdout] cd1fd909cf97223a6b52213f33dc14d6e9de1f2a96510c17b5d9c91c7ba5e464 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 912fc5ca4b4c888f21f7b89f29475aaaa6c58296383db50468e371b29ffc7c8f [INFO] running `Command { std: "docker" "start" "-a" "912fc5ca4b4c888f21f7b89f29475aaaa6c58296383db50468e371b29ffc7c8f", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.89 [INFO] [stderr] Compiling libc v0.2.164 [INFO] [stderr] Compiling serde v1.0.215 [INFO] [stderr] Compiling crossbeam-utils v0.8.20 [INFO] [stderr] Compiling rustversion v1.0.18 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling matrixmultiply v0.3.9 [INFO] [stderr] Compiling regex-automata v0.4.9 [INFO] [stderr] Compiling hashbrown v0.15.1 [INFO] [stderr] Compiling anyhow v1.0.93 [INFO] [stderr] Compiling unicode-segmentation v1.12.0 [INFO] [stderr] Compiling csv-core v0.1.11 [INFO] [stderr] Compiling clap_lex v0.7.3 [INFO] [stderr] Compiling fixedbitset v0.4.2 [INFO] [stderr] Compiling itertools v0.10.5 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling clap_builder v4.5.21 [INFO] [stderr] Compiling fxhash v0.2.1 [INFO] [stderr] Compiling triple_accel v0.4.0 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling heck v0.3.3 [INFO] [stderr] Compiling strum v0.23.0 [INFO] [stderr] Compiling bytecount v0.6.8 [INFO] [stderr] Compiling crossbeam-epoch v0.9.18 [INFO] [stderr] Compiling indexmap v2.6.0 [INFO] [stderr] Compiling crossbeam-deque v0.8.5 [INFO] [stderr] Compiling quote v1.0.37 [INFO] [stderr] Compiling rayon-core v1.12.1 [INFO] [stderr] Compiling petgraph v0.6.5 [INFO] [stderr] Compiling syn v2.0.87 [INFO] [stderr] Compiling syn v1.0.109 [INFO] [stderr] Compiling num-integer v0.1.46 [INFO] [stderr] Compiling num-complex v0.4.6 [INFO] [stderr] Compiling approx v0.5.1 [INFO] [stderr] Compiling ordered-float v2.10.1 [INFO] [stderr] Compiling itertools-num v0.1.3 [INFO] [stderr] Compiling proc-macro-error-attr2 v2.0.0 [INFO] [stderr] Compiling num-rational v0.4.2 [INFO] [stderr] Compiling rayon v1.10.0 [INFO] [stderr] Compiling getrandom v0.2.15 [INFO] [stderr] Compiling rand_core v0.6.4 [INFO] [stderr] Compiling simba v0.5.1 [INFO] [stderr] Compiling ndarray v0.15.6 [INFO] [stderr] Compiling regex v1.11.1 [INFO] [stderr] Compiling proc-macro-error2 v2.0.1 [INFO] [stderr] Compiling zerocopy-derive v0.7.35 [INFO] [stderr] Compiling serde_derive v1.0.215 [INFO] [stderr] Compiling thiserror-impl v1.0.69 [INFO] [stderr] Compiling derive-new v0.6.0 [INFO] [stderr] Compiling strum_macros v0.26.4 [INFO] [stderr] Compiling clap_derive v4.5.18 [INFO] [stderr] Compiling getset v0.1.3 [INFO] [stderr] Compiling zerocopy v0.7.35 [INFO] [stderr] Compiling nalgebra-macros v0.1.0 [INFO] [stderr] Compiling enum-map-derive v0.6.0 [INFO] [stderr] Compiling strum_macros v0.23.1 [INFO] [stderr] Compiling enum-map v1.1.1 [INFO] [stderr] Compiling ppv-lite86 v0.2.20 [INFO] [stderr] Compiling rand_chacha v0.3.1 [INFO] [stderr] Compiling clap v4.5.21 [INFO] [stderr] Compiling rand v0.8.5 [INFO] [stderr] Compiling thiserror v1.0.69 [INFO] [stderr] Compiling bio-types v1.0.4 [INFO] [stderr] Compiling rand_distr v0.4.3 [INFO] [stderr] Compiling nalgebra v0.27.1 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Compiling multimap v0.8.3 [INFO] [stderr] Compiling csv v1.3.1 [INFO] [stderr] Compiling statrs v0.15.0 [INFO] [stderr] Compiling bio v0.42.0 [INFO] [stderr] Compiling count_kmer v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 37.28s [INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: nalgebra v0.27.1 [INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 4` [INFO] running `Command { std: "docker" "inspect" "912fc5ca4b4c888f21f7b89f29475aaaa6c58296383db50468e371b29ffc7c8f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "912fc5ca4b4c888f21f7b89f29475aaaa6c58296383db50468e371b29ffc7c8f", kill_on_drop: false }` [INFO] [stdout] 912fc5ca4b4c888f21f7b89f29475aaaa6c58296383db50468e371b29ffc7c8f [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 56abf546f4e3b4f4654494f5cbad41fce2afc45eeeaac3818b6b061e763d64f4 [INFO] running `Command { std: "docker" "start" "-a" "56abf546f4e3b4f4654494f5cbad41fce2afc45eeeaac3818b6b061e763d64f4", kill_on_drop: false }` [INFO] [stderr] Compiling count_kmer v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.54s [INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: nalgebra v0.27.1 [INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 4` [INFO] running `Command { std: "docker" "inspect" "56abf546f4e3b4f4654494f5cbad41fce2afc45eeeaac3818b6b061e763d64f4", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "56abf546f4e3b4f4654494f5cbad41fce2afc45eeeaac3818b6b061e763d64f4", kill_on_drop: false }` [INFO] [stdout] 56abf546f4e3b4f4654494f5cbad41fce2afc45eeeaac3818b6b061e763d64f4 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+ad85bc524b1ad696e42061ad8338d382dffbdbe5" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] f8dd26c5fd9f7d23defdf0aa3296c205b9c07d129dedd8a1270db782e523fbbd [INFO] running `Command { std: "docker" "start" "-a" "f8dd26c5fd9f7d23defdf0aa3296c205b9c07d129dedd8a1270db782e523fbbd", kill_on_drop: false }` [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.13s [INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: nalgebra v0.27.1 [INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 4` [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/count_kmer-d2e8c8d4e1468bdd) [INFO] [stdout] [INFO] [stderr] Running unittests src/main.rs (/opt/rustwide/target/debug/deps/count_kmer-f79e61176e57a33a) [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Doc-tests count_kmer [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "f8dd26c5fd9f7d23defdf0aa3296c205b9c07d129dedd8a1270db782e523fbbd", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "f8dd26c5fd9f7d23defdf0aa3296c205b9c07d129dedd8a1270db782e523fbbd", kill_on_drop: false }` [INFO] [stdout] f8dd26c5fd9f7d23defdf0aa3296c205b9c07d129dedd8a1270db782e523fbbd