[INFO] fetching crate rustfastq 0.5.0...
[INFO] building rustfastq-0.5.0 against master#c7f6aa2869acdbf014d094c6e427e554e160b6db for pr-146237-2
[INFO] extracting crate rustfastq 0.5.0 into /workspace/builds/worker-2-tc1/source
[INFO] started tweaking crates.io crate rustfastq 0.5.0
[INFO] finished tweaking crates.io crate rustfastq 0.5.0
[INFO] tweaked toml for crates.io crate rustfastq 0.5.0 written to /workspace/builds/worker-2-tc1/source/Cargo.toml
[INFO] validating manifest of crates.io crate rustfastq 0.5.0 on toolchain c7f6aa2869acdbf014d094c6e427e554e160b6db
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c7f6aa2869acdbf014d094c6e427e554e160b6db" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate rustfastq 0.5.0 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c7f6aa2869acdbf014d094c6e427e554e160b6db" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded ieee754 v0.2.6
[INFO] [stderr]   Downloaded fs-utils v1.1.4
[INFO] [stderr]   Downloaded noodles v0.87.0
[INFO] [stderr]   Downloaded derive-new v0.6.0
[INFO] [stderr]   Downloaded linear-map v1.2.0
[INFO] [stderr]   Downloaded bio-types v1.0.4
[INFO] [stderr]   Downloaded fastq v0.6.0
[INFO] [stderr]   Downloaded lz4 v1.28.0
[INFO] [stderr]   Downloaded counter v0.6.0
[INFO] [stderr]   Downloaded noodles-bgzf v0.34.0
[INFO] [stderr]   Downloaded clap v4.5.23
[INFO] [stderr]   Downloaded noodles-fastq v0.16.0
[INFO] [stderr]   Downloaded clap_builder v4.5.23
[INFO] [stderr]   Downloaded rust-htslib v0.47.1
[INFO] [stderr]   Downloaded serde_json v1.0.134
[INFO] [stderr]   Downloaded bstr v1.11.1
[INFO] [stderr]   Downloaded bzip2-sys v0.1.11+1.0.8
[INFO] [stderr]   Downloaded hts-sys v2.2.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+c7f6aa2869acdbf014d094c6e427e554e160b6db" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 75a43997fab05881e6d06c829123b4020459455e1f5f27d7ea2f7b54e906b9fa
[INFO] running `Command { std: "docker" "start" "-a" "75a43997fab05881e6d06c829123b4020459455e1f5f27d7ea2f7b54e906b9fa", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "75a43997fab05881e6d06c829123b4020459455e1f5f27d7ea2f7b54e906b9fa", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "75a43997fab05881e6d06c829123b4020459455e1f5f27d7ea2f7b54e906b9fa", kill_on_drop: false }`
[INFO] [stdout] 75a43997fab05881e6d06c829123b4020459455e1f5f27d7ea2f7b54e906b9fa
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+c7f6aa2869acdbf014d094c6e427e554e160b6db" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 283464f0deca24de1d43818269c5e18b7739f7f65ea1166e5642aa4b2f3cf5c4
[INFO] running `Command { std: "docker" "start" "-a" "283464f0deca24de1d43818269c5e18b7739f7f65ea1166e5642aa4b2f3cf5c4", kill_on_drop: false }`
[INFO] [stderr]    Compiling serde v1.0.216
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]    Compiling miniz_oxide v0.8.2
[INFO] [stderr]    Compiling portable-atomic v1.10.0
[INFO] [stderr]    Compiling bstr v1.11.1
[INFO] [stderr]    Compiling quote v1.0.38
[INFO] [stderr]    Compiling bytes v1.9.0
[INFO] [stderr]    Compiling csv-core v0.1.11
[INFO] [stderr]    Compiling clap_builder v4.5.23
[INFO] [stderr]    Compiling console v0.15.10
[INFO] [stderr]    Compiling number_prefix v0.4.0
[INFO] [stderr]    Compiling itoa v1.0.14
[INFO] [stderr]    Compiling itertools v0.13.0
[INFO] [stderr]    Compiling syn v2.0.92
[INFO] [stderr]    Compiling flate2 v1.0.35
[INFO] [stderr]    Compiling noodles-fastq v0.16.0
[INFO] [stderr]    Compiling noodles-bgzf v0.34.0
[INFO] [stderr]    Compiling indicatif v0.17.9
[INFO] [stderr]    Compiling counter v0.6.0
[INFO] [stderr]    Compiling noodles v0.87.0
[INFO] [stderr]    Compiling csv v1.3.1
[INFO] [stderr]    Compiling clap_derive v4.5.18
[INFO] [stderr]    Compiling clap v4.5.23
[INFO] [stderr]    Compiling rustfastq v0.5.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused import: `std::path::Path`
[INFO] [stdout]  --> src/main.rs:5:5
[INFO] [stdout]   |
[INFO] [stdout] 5 | use std::path::Path;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `args`
[INFO] [stdout]    --> src/main.rs:157:31
[INFO] [stdout]     |
[INFO] [stdout] 157 |         MyCommand::demux_dual(args) => {
[INFO] [stdout]     |                               ^^^^ help: if this is intentional, prefix it with an underscore: `_args`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 4.33s
[INFO] running `Command { std: "docker" "inspect" "283464f0deca24de1d43818269c5e18b7739f7f65ea1166e5642aa4b2f3cf5c4", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "283464f0deca24de1d43818269c5e18b7739f7f65ea1166e5642aa4b2f3cf5c4", kill_on_drop: false }`
[INFO] [stdout] 283464f0deca24de1d43818269c5e18b7739f7f65ea1166e5642aa4b2f3cf5c4
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+c7f6aa2869acdbf014d094c6e427e554e160b6db" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 48ca76f85900f4869cc571698a92cd7b6cfcf040eb097b102ee0422dd728c45c
[INFO] running `Command { std: "docker" "start" "-a" "48ca76f85900f4869cc571698a92cd7b6cfcf040eb097b102ee0422dd728c45c", kill_on_drop: false }`
[INFO] [stderr]    Compiling serde v1.0.216
[INFO] [stderr]    Compiling libloading v0.8.6
[INFO] [stderr]    Compiling bindgen v0.69.5
[INFO] [stderr]    Compiling syn v2.0.92
[INFO] [stderr]    Compiling jobserver v0.1.32
[INFO] [stderr]    Compiling itertools v0.12.1
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling rustversion v1.0.19
[INFO] [stderr]    Compiling smallvec v1.13.2
[INFO] [stderr]    Compiling lazycell v1.3.0
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling serde_json v1.0.134
[INFO] [stderr]    Compiling crossbeam-channel v0.5.14
[INFO] [stderr]    Compiling half v2.4.1
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]    Compiling itertools v0.10.5
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]    Compiling rayon v1.10.0
[INFO] [stderr]    Compiling plotters v0.3.7
[INFO] [stderr]    Compiling ciborium-ll v0.2.2
[INFO] [stderr]    Compiling cc v1.2.6
[INFO] [stderr]    Compiling clang-sys v1.8.1
[INFO] [stderr]    Compiling is-terminal v0.4.13
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling ieee754 v0.2.6
[INFO] [stderr]    Compiling oorandom v11.1.4
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling linear-map v1.2.0
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling criterion-plot v0.5.0
[INFO] [stderr]    Compiling cmake v0.1.52
[INFO] [stderr]    Compiling bzip2-sys v0.1.11+1.0.8
[INFO] [stderr]    Compiling lzma-sys v0.1.20
[INFO] [stderr]    Compiling lz4-sys v1.11.1+lz4-1.10.0
[INFO] [stderr]    Compiling libz-sys v1.1.20
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]    Compiling flate2 v1.0.35
[INFO] [stderr]    Compiling synstructure v0.13.1
[INFO] [stderr]    Compiling noodles-bgzf v0.34.0
[INFO] [stderr]    Compiling noodles v0.87.0
[INFO] [stderr]    Compiling zerofrom-derive v0.1.5
[INFO] [stderr]    Compiling yoke-derive v0.7.5
[INFO] [stderr]    Compiling zerovec-derive v0.10.3
[INFO] [stderr]    Compiling displaydoc v0.2.5
[INFO] [stderr]    Compiling icu_provider_macros v1.5.0
[INFO] [stderr]    Compiling serde_derive v1.0.216
[INFO] [stderr]    Compiling clap_derive v4.5.18
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling strum_macros v0.26.4
[INFO] [stderr]    Compiling derive-new v0.6.0
[INFO] [stderr]    Compiling thiserror v1.0.69
[INFO] [stderr]    Compiling zerofrom v0.1.5
[INFO] [stderr]    Compiling yoke v0.7.5
[INFO] [stderr]    Compiling bio-types v1.0.4
[INFO] [stderr]    Compiling zerovec v0.10.4
[INFO] [stderr]    Compiling clap v4.5.23
[INFO] [stderr]    Compiling tinystr v0.7.6
[INFO] [stderr]    Compiling icu_collections v1.5.0
[INFO] [stderr]    Compiling icu_locid v1.5.0
[INFO] [stderr]    Compiling icu_provider v1.5.0
[INFO] [stderr]    Compiling icu_locid_transform v1.5.0
[INFO] [stderr]    Compiling hts-sys v2.2.0
[INFO] [stderr]    Compiling icu_properties v1.5.1
[INFO] [stderr]    Compiling lz4 v1.28.0
[INFO] [stderr]    Compiling fastq v0.6.0
[INFO] [stderr]    Compiling ciborium v0.2.2
[INFO] [stderr]    Compiling csv v1.3.1
[INFO] [stderr]    Compiling rustfastq v0.5.0 (/opt/rustwide/workdir)
[INFO] [stderr]    Compiling icu_normalizer v1.5.0
[INFO] [stderr]    Compiling tinytemplate v1.2.1
[INFO] [stderr]    Compiling criterion v0.5.1
[INFO] [stderr]    Compiling idna_adapter v1.2.0
[INFO] [stderr]    Compiling idna v1.0.3
[INFO] [stderr]    Compiling url v2.5.4
[INFO] [stderr]    Compiling rust-htslib v0.47.1
[INFO] [stdout] warning: unused import: `std::path::Path`
[INFO] [stdout]  --> src/main.rs:5:5
[INFO] [stdout]   |
[INFO] [stdout] 5 | use std::path::Path;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `crate::test_files::TEST_FASTQ_R1`
[INFO] [stdout]    --> src/io.rs:172:9
[INFO] [stdout]     |
[INFO] [stdout] 172 |     use crate::test_files::TEST_FASTQ_R1;
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `test_make_fastq` is never used
[INFO] [stdout]    --> src/io.rs:372:8
[INFO] [stdout]     |
[INFO] [stdout] 372 |     fn test_make_fastq() {
[INFO] [stdout]     |        ^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `test_filter` is never used
[INFO] [stdout]    --> src/io.rs:401:12
[INFO] [stdout]     |
[INFO] [stdout] 401 |     pub fn test_filter() {
[INFO] [stdout]     |            ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `args`
[INFO] [stdout]    --> src/main.rs:157:31
[INFO] [stdout]     |
[INFO] [stdout] 157 |         MyCommand::demux_dual(args) => {
[INFO] [stdout]     |                               ^^^^ help: if this is intentional, prefix it with an underscore: `_args`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `test_bamfile_RG` should have a snake case name
[INFO] [stdout]    --> src/main.rs:235:4
[INFO] [stdout]     |
[INFO] [stdout] 235 | fn test_bamfile_RG() {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `test_bamfile_rg`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(non_snake_case)]` (part of `#[warn(nonstandard_style)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 31.88s
[INFO] running `Command { std: "docker" "inspect" "48ca76f85900f4869cc571698a92cd7b6cfcf040eb097b102ee0422dd728c45c", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "48ca76f85900f4869cc571698a92cd7b6cfcf040eb097b102ee0422dd728c45c", kill_on_drop: false }`
[INFO] [stdout] 48ca76f85900f4869cc571698a92cd7b6cfcf040eb097b102ee0422dd728c45c