[INFO] fetching crate rust-htslib 0.50.0... [INFO] building rust-htslib-0.50.0 against master#c7f6aa2869acdbf014d094c6e427e554e160b6db for pr-146237-2 [INFO] extracting crate rust-htslib 0.50.0 into /workspace/builds/worker-1-tc1/source [INFO] started tweaking crates.io crate rust-htslib 0.50.0 [INFO] finished tweaking crates.io crate rust-htslib 0.50.0 [INFO] tweaked toml for crates.io crate rust-htslib 0.50.0 written to /workspace/builds/worker-1-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate rust-htslib 0.50.0 on toolchain c7f6aa2869acdbf014d094c6e427e554e160b6db [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c7f6aa2869acdbf014d094c6e427e554e160b6db" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate rust-htslib 0.50.0 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c7f6aa2869acdbf014d094c6e427e554e160b6db" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded libdeflate-sys v1.24.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+c7f6aa2869acdbf014d094c6e427e554e160b6db" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 9cc5f013840200e9d15efdb2499d329ea31ebef0a78475a3850366f9e4e1c83e [INFO] running `Command { std: "docker" "start" "-a" "9cc5f013840200e9d15efdb2499d329ea31ebef0a78475a3850366f9e4e1c83e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "9cc5f013840200e9d15efdb2499d329ea31ebef0a78475a3850366f9e4e1c83e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "9cc5f013840200e9d15efdb2499d329ea31ebef0a78475a3850366f9e4e1c83e", kill_on_drop: false }` [INFO] [stdout] 9cc5f013840200e9d15efdb2499d329ea31ebef0a78475a3850366f9e4e1c83e [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+c7f6aa2869acdbf014d094c6e427e554e160b6db" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] e4dad25f8cc4fe1240803d6e46f0e9e812895fb611b937e8e05eb1eb5e92880f [INFO] running `Command { std: "docker" "start" "-a" "e4dad25f8cc4fe1240803d6e46f0e9e812895fb611b937e8e05eb1eb5e92880f", kill_on_drop: false }` [INFO] [stderr] Compiling glob v0.3.2 [INFO] [stderr] Compiling cfg-if v1.0.1 [INFO] [stderr] Compiling nom v7.1.3 [INFO] [stderr] Compiling either v1.15.0 [INFO] [stderr] Compiling regex-automata v0.4.9 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Compiling bitflags v2.9.1 [INFO] [stderr] Compiling jobserver v0.1.33 [INFO] [stderr] Compiling thiserror-impl v2.0.12 [INFO] [stderr] Compiling strum_macros v0.26.4 [INFO] [stderr] Compiling derive-new v0.6.0 [INFO] [stderr] Compiling derive-new v0.7.0 [INFO] [stderr] Compiling ieee754 v0.2.6 [INFO] [stderr] Compiling linear-map v1.2.0 [INFO] [stderr] Compiling icu_normalizer v2.0.0 [INFO] [stderr] Compiling libloading v0.8.8 [INFO] [stderr] Compiling fs-utils v1.1.4 [INFO] [stderr] Compiling itertools v0.12.1 [INFO] [stderr] Compiling cc v1.2.29 [INFO] [stderr] Compiling clang-sys v1.8.1 [INFO] [stderr] Compiling idna_adapter v1.2.1 [INFO] [stderr] Compiling bindgen v0.69.5 [INFO] [stderr] Compiling idna v1.0.3 [INFO] [stderr] Compiling url v2.5.4 [INFO] [stderr] Compiling thiserror v2.0.12 [INFO] [stderr] Compiling openssl-src v300.5.1+3.5.1 [INFO] [stderr] Compiling cmake v0.1.54 [INFO] [stderr] Compiling openssl-sys v0.9.109 [INFO] [stderr] Compiling bzip2-sys v0.1.13+1.0.8 [INFO] [stderr] Compiling lzma-sys v0.1.20 [INFO] [stderr] Compiling curl-sys v0.4.82+curl-8.14.1 [INFO] [stderr] Compiling libz-sys v1.1.22 [INFO] [stderr] Compiling regex v1.11.1 [INFO] [stderr] Compiling cexpr v0.6.0 [INFO] [stderr] Compiling bio-types v1.0.4 [INFO] [stderr] Compiling hts-sys v2.2.0 [INFO] [stderr] Compiling rust-htslib v0.50.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> src/bam/buffer.rs:160:17 [INFO] [stdout] | [INFO] [stdout] 160 | pub fn iter(&self) -> vec_deque::Iter> { [INFO] [stdout] | ^^^^^ ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 160 | pub fn iter(&self) -> vec_deque::Iter<'_, Rc> { [INFO] [stdout] | +++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> src/bam/buffer.rs:165:21 [INFO] [stdout] | [INFO] [stdout] 165 | pub fn iter_mut(&mut self) -> vec_deque::IterMut> { [INFO] [stdout] | ^^^^^^^^^ ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 165 | pub fn iter_mut(&mut self) -> vec_deque::IterMut<'_, Rc> { [INFO] [stdout] | +++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> src/bam/header.rs:109:21 [INFO] [stdout] | [INFO] [stdout] 109 | pub fn comments(&self) -> impl Iterator> { [INFO] [stdout] | ^^^^^ ^^^^^^^^ the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 109 | pub fn comments(&self) -> impl Iterator> { [INFO] [stdout] | +++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> src/bam/record.rs:836:21 [INFO] [stdout] | [INFO] [stdout] 836 | pub fn aux_iter(&self) -> AuxIter { [INFO] [stdout] | ^^^^^ ^^^^^^^ the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 836 | pub fn aux_iter(&self) -> AuxIter<'_> { [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> src/bam/record.rs:1121:26 [INFO] [stdout] | [INFO] [stdout] 1121 | pub fn basemods_iter(&self) -> Result { [INFO] [stdout] | ^^^^^ ^^^^^^^^^^^^^^^^^^^^^ the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 1121 | pub fn basemods_iter(&self) -> Result> { [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> src/bam/record.rs:1128:35 [INFO] [stdout] | [INFO] [stdout] 1128 | pub fn basemods_position_iter(&self) -> Result { [INFO] [stdout] | ^^^^^ ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 1128 | pub fn basemods_position_iter(&self) -> Result> { [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> src/bam/record.rs:1507:17 [INFO] [stdout] | [INFO] [stdout] 1507 | pub fn iter(&self) -> AuxArrayIter { [INFO] [stdout] | ^^^^^ ^^^^^^^^^^^^^^^ the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 1507 | pub fn iter(&self) -> AuxArrayIter<'_, T> { [INFO] [stdout] | +++ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 2m 52s [INFO] running `Command { std: "docker" "inspect" "e4dad25f8cc4fe1240803d6e46f0e9e812895fb611b937e8e05eb1eb5e92880f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "e4dad25f8cc4fe1240803d6e46f0e9e812895fb611b937e8e05eb1eb5e92880f", kill_on_drop: false }` [INFO] [stdout] e4dad25f8cc4fe1240803d6e46f0e9e812895fb611b937e8e05eb1eb5e92880f [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+c7f6aa2869acdbf014d094c6e427e554e160b6db" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] e604965f466760a721d61a8991534159dd0194a075b1a5991368e06e325952e7 [INFO] running `Command { std: "docker" "start" "-a" "e604965f466760a721d61a8991534159dd0194a075b1a5991368e06e325952e7", kill_on_drop: false }` [INFO] [stderr] Compiling libloading v0.8.8 [INFO] [stderr] Compiling serde v1.0.219 [INFO] [stderr] Compiling getrandom v0.3.3 [INFO] [stderr] Compiling diff v0.1.13 [INFO] [stderr] Compiling yansi v1.0.1 [INFO] [stderr] Compiling clang-sys v1.8.1 [INFO] [stderr] Compiling tempfile v3.20.0 [INFO] [stderr] Compiling pretty_assertions v1.4.1 [INFO] [stderr] Compiling bindgen v0.69.5 [INFO] [stderr] Compiling bincode v1.3.3 [INFO] [stderr] Compiling serde_json v1.0.140 [INFO] [stderr] Compiling hts-sys v2.2.0 [INFO] [stderr] Compiling rust-htslib v0.50.0 (/opt/rustwide/workdir) [INFO] [stdout] error: couldn't read `src/bgzf/../../test/bgzip/plain.vcf`: No such file or directory (os error 2) [INFO] [stdout] --> src/bgzf/mod.rs:303:27 [INFO] [stdout] | [INFO] [stdout] 303 | const CONTENT: &str = include_str!("../../test/bgzip/plain.vcf"); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> src/bam/buffer.rs:160:17 [INFO] [stdout] | [INFO] [stdout] 160 | pub fn iter(&self) -> vec_deque::Iter> { [INFO] [stdout] | ^^^^^ ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 160 | pub fn iter(&self) -> vec_deque::Iter<'_, Rc> { [INFO] [stdout] | +++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> src/bam/buffer.rs:165:21 [INFO] [stdout] | [INFO] [stdout] 165 | pub fn iter_mut(&mut self) -> vec_deque::IterMut> { [INFO] [stdout] | ^^^^^^^^^ ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 165 | pub fn iter_mut(&mut self) -> vec_deque::IterMut<'_, Rc> { [INFO] [stdout] | +++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> src/bam/header.rs:109:21 [INFO] [stdout] | [INFO] [stdout] 109 | pub fn comments(&self) -> impl Iterator> { [INFO] [stdout] | ^^^^^ ^^^^^^^^ the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 109 | pub fn comments(&self) -> impl Iterator> { [INFO] [stdout] | +++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> src/bam/record.rs:836:21 [INFO] [stdout] | [INFO] [stdout] 836 | pub fn aux_iter(&self) -> AuxIter { [INFO] [stdout] | ^^^^^ ^^^^^^^ the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 836 | pub fn aux_iter(&self) -> AuxIter<'_> { [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> src/bam/record.rs:1121:26 [INFO] [stdout] | [INFO] [stdout] 1121 | pub fn basemods_iter(&self) -> Result { [INFO] [stdout] | ^^^^^ ^^^^^^^^^^^^^^^^^^^^^ the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 1121 | pub fn basemods_iter(&self) -> Result> { [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> src/bam/record.rs:1128:35 [INFO] [stdout] | [INFO] [stdout] 1128 | pub fn basemods_position_iter(&self) -> Result { [INFO] [stdout] | ^^^^^ ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 1128 | pub fn basemods_position_iter(&self) -> Result> { [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing [INFO] [stdout] --> src/bam/record.rs:1507:17 [INFO] [stdout] | [INFO] [stdout] 1507 | pub fn iter(&self) -> AuxArrayIter { [INFO] [stdout] | ^^^^^ ^^^^^^^^^^^^^^^ the same lifetime is hidden here [INFO] [stdout] | | [INFO] [stdout] | the lifetime is elided here [INFO] [stdout] | [INFO] [stdout] = help: the same lifetime is referred to in inconsistent ways, making the signature confusing [INFO] [stdout] help: use `'_` for type paths [INFO] [stdout] | [INFO] [stdout] 1507 | pub fn iter(&self) -> AuxArrayIter<'_, T> { [INFO] [stdout] | +++ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] error: could not compile `rust-htslib` (lib test) due to 1 previous error [INFO] running `Command { std: "docker" "inspect" "e604965f466760a721d61a8991534159dd0194a075b1a5991368e06e325952e7", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "e604965f466760a721d61a8991534159dd0194a075b1a5991368e06e325952e7", kill_on_drop: false }` [INFO] [stdout] e604965f466760a721d61a8991534159dd0194a075b1a5991368e06e325952e7