[INFO] fetching crate rumi 0.2.1... [INFO] building rumi-0.2.1 against master#c7f6aa2869acdbf014d094c6e427e554e160b6db for pr-146237-2 [INFO] extracting crate rumi 0.2.1 into /workspace/builds/worker-1-tc1/source [INFO] started tweaking crates.io crate rumi 0.2.1 [INFO] finished tweaking crates.io crate rumi 0.2.1 [INFO] tweaked toml for crates.io crate rumi 0.2.1 written to /workspace/builds/worker-1-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate rumi 0.2.1 on toolchain c7f6aa2869acdbf014d094c6e427e554e160b6db [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c7f6aa2869acdbf014d094c6e427e554e160b6db" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate rumi 0.2.1 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c7f6aa2869acdbf014d094c6e427e554e160b6db" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Updating crates.io index [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded snafu v0.5.0 [INFO] [stderr] Downloaded newtype_derive v0.1.6 [INFO] [stderr] Downloaded doc-comment v0.3.1 [INFO] [stderr] Downloaded rustc_version v0.1.7 [INFO] [stderr] Downloaded url v2.1.0 [INFO] [stderr] Downloaded linear-map v1.2.0 [INFO] [stderr] Downloaded semver v0.1.20 [INFO] [stderr] Downloaded crossbeam-deque v0.6.3 [INFO] [stderr] Downloaded wincolor v1.0.1 [INFO] [stderr] Downloaded cexpr v0.3.5 [INFO] [stderr] Downloaded rustc-hash v1.0.1 [INFO] [stderr] Downloaded humantime v1.2.0 [INFO] [stderr] Downloaded rayon-core v1.5.0 [INFO] [stderr] Downloaded bindgen v0.51.1 [INFO] [stderr] Downloaded serde v1.0.97 [INFO] [stderr] Downloaded itertools v0.8.0 [INFO] [stderr] Downloaded pkg-config v0.3.14 [INFO] [stderr] Downloaded syn v0.15.39 [INFO] [stderr] Downloaded clang-sys v0.28.0 [INFO] [stderr] Downloaded log v0.4.7 [INFO] [stderr] Downloaded serde_derive v1.0.97 [INFO] [stderr] Downloaded quick-error v1.2.2 [INFO] [stderr] Downloaded winapi-util v0.1.2 [INFO] [stderr] Downloaded termcolor v1.0.5 [INFO] [stderr] Downloaded custom_derive v0.1.7 [INFO] [stderr] Downloaded ieee754 v0.2.6 [INFO] [stderr] Downloaded which v3.1.0 [INFO] [stderr] Downloaded snafu-derive v0.5.0 [INFO] [stderr] Downloaded fs-utils v1.1.1 [INFO] [stderr] Downloaded cc v1.0.37 [INFO] [stderr] Downloaded bio-types v0.5.1 [INFO] [stderr] Downloaded rayon v1.1.0 [INFO] [stderr] Downloaded lzma-sys v0.1.14 [INFO] [stderr] Downloaded basebits v1.2.0 [INFO] [stderr] Downloaded rust-htslib v0.26.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+c7f6aa2869acdbf014d094c6e427e554e160b6db" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 92367ea3cf09fcd69abca9669d654bc65c6f708827f2bab6107487cd2288aa94 [INFO] running `Command { std: "docker" "start" "-a" "92367ea3cf09fcd69abca9669d654bc65c6f708827f2bab6107487cd2288aa94", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "92367ea3cf09fcd69abca9669d654bc65c6f708827f2bab6107487cd2288aa94", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "92367ea3cf09fcd69abca9669d654bc65c6f708827f2bab6107487cd2288aa94", kill_on_drop: false }` [INFO] [stdout] 92367ea3cf09fcd69abca9669d654bc65c6f708827f2bab6107487cd2288aa94 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+c7f6aa2869acdbf014d094c6e427e554e160b6db" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 062b4b806418ada96e5989e6219c6407dce99390d0bf66997a5c7fdf7f5aa064 [INFO] running `Command { std: "docker" "start" "-a" "062b4b806418ada96e5989e6219c6407dce99390d0bf66997a5c7fdf7f5aa064", kill_on_drop: false }` [INFO] [stderr] Compiling cc v1.0.37 [INFO] [stderr] Compiling libc v0.2.65 [INFO] [stderr] Compiling cfg-if v0.1.9 [INFO] [stderr] Compiling memchr v2.2.1 [INFO] [stderr] Compiling quick-error v1.2.2 [INFO] [stderr] Compiling pkg-config v0.3.14 [INFO] [stderr] Compiling glob v0.2.11 [INFO] [stderr] Compiling version_check v0.1.5 [INFO] [stderr] Compiling syn v0.15.39 [INFO] [stderr] Compiling byteorder v1.3.2 [INFO] [stderr] Compiling log v0.4.7 [INFO] [stderr] Compiling thread_local v0.3.6 [INFO] [stderr] Compiling regex-syntax v0.6.12 [INFO] [stderr] Compiling proc-macro2 v1.0.6 [INFO] [stderr] Compiling memoffset v0.5.1 [INFO] [stderr] Compiling arrayvec v0.4.11 [INFO] [stderr] Compiling unicode-width v0.1.5 [INFO] [stderr] Compiling humantime v1.2.0 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Compiling crossbeam-utils v0.6.6 [INFO] [stderr] Compiling ansi_term v0.11.0 [INFO] [stderr] Compiling termcolor v1.0.5 [INFO] [stderr] Compiling nodrop v0.1.13 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling bindgen v0.51.1 [INFO] [stderr] Compiling clang-sys v0.28.0 [INFO] [stderr] Compiling vec_map v0.8.1 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling nom v4.2.3 [INFO] [stderr] Compiling aho-corasick v0.7.6 [INFO] [stderr] Compiling atty v0.2.13 [INFO] [stderr] Compiling which v3.1.0 [INFO] [stderr] Compiling matches v0.1.8 [INFO] [stderr] Compiling smallvec v0.6.10 [INFO] [stderr] Compiling clap v2.33.0 [INFO] [stderr] Compiling serde v1.0.97 [INFO] [stderr] Compiling doc-comment v0.3.1 [INFO] [stderr] Compiling scopeguard v1.0.0 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling quote v1.0.2 [INFO] [stderr] Compiling crossbeam-epoch v0.7.2 [INFO] [stderr] Compiling unicode-normalization v0.1.8 [INFO] [stderr] Compiling unicode-bidi v0.3.4 [INFO] [stderr] Compiling fs-utils v1.1.1 [INFO] [stderr] Compiling either v1.5.2 [INFO] [stderr] Compiling rustc-demangle v0.1.16 [INFO] [stderr] Compiling rustc-hash v1.0.1 [INFO] [stderr] Compiling rayon-core v1.5.0 [INFO] [stderr] Compiling crossbeam-queue v0.1.2 [INFO] [stderr] Compiling crossbeam-deque v0.6.3 [INFO] [stderr] Compiling num_cpus v1.10.1 [INFO] [stderr] Compiling percent-encoding v2.1.0 [INFO] [stderr] Compiling libloading v0.5.2 [INFO] [stderr] Compiling backtrace-sys v0.1.32 [INFO] [stderr] Compiling libz-sys v1.0.25 [INFO] [stderr] Compiling lzma-sys v0.1.14 [INFO] [stderr] Compiling bzip2-sys v0.1.7 [INFO] [stderr] Compiling itertools v0.8.0 [INFO] [stderr] Compiling ieee754 v0.2.6 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling linear-map v1.2.0 [INFO] [stderr] Compiling basebits v1.2.0 [INFO] [stderr] Compiling cexpr v0.3.5 [INFO] [stderr] Compiling rayon v1.1.0 [INFO] [stderr] Compiling backtrace v0.3.40 [INFO] [stderr] Compiling regex v1.3.1 [INFO] [stderr] Compiling idna v0.2.0 [INFO] [stderr] Compiling url v2.1.0 [INFO] [stderr] Compiling env_logger v0.6.2 [INFO] [stderr] Compiling serde_derive v1.0.97 [INFO] [stderr] Compiling snafu-derive v0.5.0 [INFO] [stderr] Compiling snafu v0.5.0 [INFO] [stderr] Compiling bio-types v0.5.1 [INFO] [stderr] Compiling rust-htslib v0.26.0 [INFO] [stderr] error: failed to run custom build command for `rust-htslib v0.26.0` [INFO] [stderr] note: To improve backtraces for build dependencies, set the CARGO_PROFILE_DEV_BUILD_OVERRIDE_DEBUG=true environment variable to enable debug information generation. [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/rust-htslib-6f0ffefaa74d37b9/build-script-build` (exit status: 101) [INFO] [stderr] --- stdout [INFO] [stderr] OPT_LEVEL = Some("0") [INFO] [stderr] TARGET = Some("x86_64-unknown-linux-gnu") [INFO] [stderr] HOST = Some("x86_64-unknown-linux-gnu") [INFO] [stderr] CC_x86_64-unknown-linux-gnu = None [INFO] [stderr] CC_x86_64_unknown_linux_gnu = None [INFO] [stderr] HOST_CC = None [INFO] [stderr] CC = None [INFO] [stderr] CFLAGS_x86_64-unknown-linux-gnu = None [INFO] [stderr] CFLAGS_x86_64_unknown_linux_gnu = None [INFO] [stderr] HOST_CFLAGS = None [INFO] [stderr] CFLAGS = None [INFO] [stderr] CRATE_CC_NO_DEFAULTS = None [INFO] [stderr] DEBUG = Some("true") [INFO] [stderr] echo '/* Default config.h generated by Makefile */' > config.h [INFO] [stderr] echo '#define HAVE_LIBBZ2 1' >> config.h [INFO] [stderr] echo '#define HAVE_LIBLZMA 1' >> config.h [INFO] [stderr] echo '#define HAVE_LZMA_H 1' >> config.h [INFO] [stderr] echo '#define HAVE_FSEEKO 1' >> config.h [INFO] [stderr] echo '#define HAVE_DRAND48 1' >> config.h [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o kfunc.o kfunc.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o knetfile.o knetfile.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o kstring.o kstring.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o bcf_sr_sort.o bcf_sr_sort.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o bgzf.o bgzf.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o errmod.o errmod.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o faidx.o faidx.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o hfile.o hfile.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o hfile_net.o hfile_net.c [INFO] [stderr] echo '#define HTS_VERSION "1.9"' > version.h [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o hts.o hts.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o hts_os.o hts_os.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o md5.o md5.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o multipart.o multipart.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o probaln.o probaln.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o realn.o realn.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o regidx.o regidx.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o sam.o sam.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o synced_bcf_reader.o synced_bcf_reader.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o vcf_sweep.o vcf_sweep.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o tbx.o tbx.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o textutils.o textutils.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o thread_pool.o thread_pool.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o vcf.o vcf.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o vcfutils.o vcfutils.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o cram/cram_codecs.o cram/cram_codecs.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o cram/cram_decode.o cram/cram_decode.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o cram/cram_encode.o cram/cram_encode.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o cram/cram_external.o cram/cram_external.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o cram/cram_index.o cram/cram_index.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o cram/cram_io.o cram/cram_io.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o cram/cram_samtools.o cram/cram_samtools.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o cram/cram_stats.o cram/cram_stats.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o cram/files.o cram/files.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o cram/mFILE.o cram/mFILE.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o cram/open_trace_file.o cram/open_trace_file.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o cram/pooled_alloc.o cram/pooled_alloc.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o cram/rANS_static.o cram/rANS_static.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o cram/sam_header.o cram/sam_header.c [INFO] [stderr] cc -ffunction-sections -fdata-sections -fPIC -g -fno-omit-frame-pointer -m64 -static -I /opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include -I. -c -o cram/string_alloc.o cram/string_alloc.c [INFO] [stderr] ar -rc libhts.a kfunc.o knetfile.o kstring.o bcf_sr_sort.o bgzf.o errmod.o faidx.o hfile.o hfile_net.o hts.o hts_os.o md5.o multipart.o probaln.o realn.o regidx.o sam.o synced_bcf_reader.o vcf_sweep.o tbx.o textutils.o thread_pool.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_samtools.o cram/cram_stats.o cram/files.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/rANS_static.o cram/sam_header.o cram/string_alloc.o [INFO] [stderr] ranlib libhts.a [INFO] [stderr] running: "cc" "-O0" "-ffunction-sections" "-fdata-sections" "-fPIC" "-g" "-fno-omit-frame-pointer" "-m64" "-static" "-I" "/opt/rustwide/target/debug/build/bzip2-sys-17a3df40b73e1520/out/include" "-o" "/opt/rustwide/target/debug/build/rust-htslib-c132e775c77b731f/out/wrapper.o" "-c" "wrapper.c" [INFO] [stderr] exit status: 0 [INFO] [stderr] AR_x86_64-unknown-linux-gnu = None [INFO] [stderr] AR_x86_64_unknown_linux_gnu = None [INFO] [stderr] HOST_AR = None [INFO] [stderr] AR = None [INFO] [stderr] running: "ar" "crs" "/opt/rustwide/target/debug/build/rust-htslib-c132e775c77b731f/out/libwrapper.a" "/opt/rustwide/target/debug/build/rust-htslib-c132e775c77b731f/out/wrapper.o" [INFO] [stderr] exit status: 0 [INFO] [stderr] cargo:rustc-link-lib=static=wrapper [INFO] [stderr] cargo:rustc-link-search=native=/opt/rustwide/target/debug/build/rust-htslib-c132e775c77b731f/out [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] hts.c: In function 'hts_idx_init': [INFO] [stderr] hts.c:1386:59: warning: overflow in conversion from 'uint32_t' {aka 'unsigned int'} to 'int' changes value from 'idx->z.last_bin = 4294967295' to '-1' [-Woverflow] [INFO] [stderr] 1386 | idx->z.save_bin = idx->z.save_tid = idx->z.last_tid = idx->z.last_bin = 0xffffffffu; [INFO] [stderr] | ^~~ [INFO] [stderr] [INFO] [stderr] thread 'main' (1580) panicked at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/proc-macro2-1.0.6/src/fallback.rs:594:9: [INFO] [stderr] "htsFormat_struct_(unnamed_at__/htslib/htslib/hts_h_154_5)" is not a valid Ident [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x560248a30782 - std::backtrace_rs::backtrace::libunwind::trace::ha2a9ae9e69b87a03 [INFO] [stderr] at /rustc/c7f6aa2869acdbf014d094c6e427e554e160b6db/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9 [INFO] [stderr] 1: 0x560248a30782 - std::backtrace_rs::backtrace::trace_unsynchronized::h7757f80677e51a33 [INFO] [stderr] at /rustc/c7f6aa2869acdbf014d094c6e427e554e160b6db/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14 [INFO] [stderr] 2: 0x560248a30782 - std::sys::backtrace::_print_fmt::h6552c7cfff6c56fd [INFO] [stderr] at /rustc/c7f6aa2869acdbf014d094c6e427e554e160b6db/library/std/src/sys/backtrace.rs:66:9 [INFO] [stderr] 3: 0x560248a30782 - ::fmt::h8094475e363f1053 [INFO] [stderr] at /rustc/c7f6aa2869acdbf014d094c6e427e554e160b6db/library/std/src/sys/backtrace.rs:39:26 [INFO] [stderr] 4: 0x560248a41b0f - core::fmt::rt::Argument::fmt::h88a25a51f53034c0 [INFO] [stderr] at /rustc/c7f6aa2869acdbf014d094c6e427e554e160b6db/library/core/src/fmt/rt.rs:173:76 [INFO] [stderr] 5: 0x560248a41b0f - core::fmt::write::h501eb1fe28dabfbb [INFO] [stderr] at /rustc/c7f6aa2869acdbf014d094c6e427e554e160b6db/library/core/src/fmt/mod.rs:1468:25 [INFO] [stderr] 6: 0x5602489fdd11 - std::io::default_write_fmt::h992ad3fe47aac8bd [INFO] [stderr] at /rustc/c7f6aa2869acdbf014d094c6e427e554e160b6db/library/std/src/io/mod.rs:639:11 [INFO] [stderr] 7: 0x5602489fdd11 - std::io::Write::write_fmt::h8b96bc323947a405 [INFO] [stderr] at /rustc/c7f6aa2869acdbf014d094c6e427e554e160b6db/library/std/src/io/mod.rs:1954:13 [INFO] [stderr] 8: 0x560248a0a1f2 - std::sys::backtrace::BacktraceLock::print::h7aea9e658d3d67e5 [INFO] [stderr] at /rustc/c7f6aa2869acdbf014d094c6e427e554e160b6db/library/std/src/sys/backtrace.rs:42:9 [INFO] [stderr] 9: 0x560248a0d87f - std::panicking::default_hook::{{closure}}::h9182baa5e2ff55c0 [INFO] [stderr] at /rustc/c7f6aa2869acdbf014d094c6e427e554e160b6db/library/std/src/panicking.rs:301:27 [INFO] [stderr] 10: 0x560248a0d6d9 - std::panicking::default_hook::hfb4945b05f344c7f [INFO] [stderr] at /rustc/c7f6aa2869acdbf014d094c6e427e554e160b6db/library/std/src/panicking.rs:328:9 [INFO] [stderr] 11: 0x560248a0df05 - std::panicking::panic_with_hook::h56e601fd3ec36096 [INFO] [stderr] at /rustc/c7f6aa2869acdbf014d094c6e427e554e160b6db/library/std/src/panicking.rs:834:13 [INFO] [stderr] 12: 0x560248a0dd9a - std::panicking::panic_handler::{{closure}}::h1609d3c3912948cb [INFO] [stderr] at /rustc/c7f6aa2869acdbf014d094c6e427e554e160b6db/library/std/src/panicking.rs:707:13 [INFO] [stderr] 13: 0x560248a0a329 - std::sys::backtrace::__rust_end_short_backtrace::h03d671aa8d777602 [INFO] [stderr] at /rustc/c7f6aa2869acdbf014d094c6e427e554e160b6db/library/std/src/sys/backtrace.rs:174:18 [INFO] [stderr] 14: 0x5602489f1f7d - __rustc[aa3aaccdf5d52e38]::rust_begin_unwind [INFO] [stderr] at /rustc/c7f6aa2869acdbf014d094c6e427e554e160b6db/library/std/src/panicking.rs:698:5 [INFO] [stderr] 15: 0x560248a4bcb0 - core::panicking::panic_fmt::h2ccb5f5950fb2ea3 [INFO] [stderr] at /rustc/c7f6aa2869acdbf014d094c6e427e554e160b6db/library/core/src/panicking.rs:78:14 [INFO] [stderr] 16: 0x56024890377f - proc_macro2::fallback::validate_ident::h75874f8ec58b9dbd [INFO] [stderr] 17: 0x560248905f01 - proc_macro2::fallback::Ident::_new::h249c68ee7fe4b20d [INFO] [stderr] 18: 0x560248905ebf - proc_macro2::fallback::Ident::new::hb5cd25fbcd044b14 [INFO] [stderr] 19: 0x5602488fc1f8 - proc_macro2::Ident::new::he2d0acea86f41c94 [INFO] [stderr] 20: 0x5602486ed1a5 - bindgen::ir::context::BindgenContext::rust_ident_raw::h5d0fa54b4b74f790 [INFO] [stderr] 21: 0x5602486eb260 - bindgen::ir::context::BindgenContext::rust_ident::heaf3152c0cc2b3f5 [INFO] [stderr] 22: 0x56024878cc1a - ::codegen::h686f9b0d2905cf43 [INFO] [stderr] 23: 0x56024873c67f - ::codegen::hff2e28e0f4bcd3b6 [INFO] [stderr] 24: 0x5602486a8fc9 - ::codegen::he963968b3e574507 [INFO] [stderr] 25: 0x560248794901 - ::codegen::h686f9b0d2905cf43 [INFO] [stderr] 26: 0x56024873c67f - ::codegen::hff2e28e0f4bcd3b6 [INFO] [stderr] 27: 0x5602486a8fc9 - ::codegen::he963968b3e574507 [INFO] [stderr] 28: 0x56024870f1c5 - ::codegen::{{closure}}::h6c5e73d7cd3d6fad [INFO] [stderr] 29: 0x5602487a77e1 - ::codegen::h85493de57402946f [INFO] [stderr] 30: 0x5602486a8fa4 - ::codegen::he963968b3e574507 [INFO] [stderr] 31: 0x56024871e94c - bindgen::codegen::codegen::{{closure}}::h660741a8e784f79a [INFO] [stderr] 32: 0x5602486f7fd8 - bindgen::ir::context::BindgenContext::gen::hc96d5582d414f449 [INFO] [stderr] 33: 0x56024871e1dd - bindgen::codegen::codegen::hf7a8e3bf2cfbaaef [INFO] [stderr] 34: 0x56024869f1e6 - bindgen::Bindings::generate::ha7f44b2e1d52e1d2 [INFO] [stderr] 35: 0x56024869b415 - bindgen::Builder::generate::hca5d9d055fd31173 [INFO] [stderr] 36: 0x56024863e53f - build_script_build::main::h63e71821fa61b25e [INFO] [stderr] 37: 0x56024863fea3 - core::ops::function::FnOnce::call_once::hb6cabe85f9e1ca1f [INFO] [stderr] 38: 0x56024863fb46 - std::sys::backtrace::__rust_begin_short_backtrace::h282f9fe43b17bd95 [INFO] [stderr] 39: 0x56024863faa9 - std::rt::lang_start::{{closure}}::hc6e968cd834758a8 [INFO] [stderr] 40: 0x5602489ff8a0 - core::ops::function::impls:: for &F>::call_once::haefda49eac6aabe3 [INFO] [stderr] at /rustc/c7f6aa2869acdbf014d094c6e427e554e160b6db/library/core/src/ops/function.rs:287:21 [INFO] [stderr] 41: 0x5602489ff8a0 - std::panicking::catch_unwind::do_call::hf37797e2fddac2f0 [INFO] [stderr] at /rustc/c7f6aa2869acdbf014d094c6e427e554e160b6db/library/std/src/panicking.rs:590:40 [INFO] [stderr] 42: 0x5602489ff8a0 - std::panicking::catch_unwind::h909d1e8985436f28 [INFO] [stderr] at /rustc/c7f6aa2869acdbf014d094c6e427e554e160b6db/library/std/src/panicking.rs:553:19 [INFO] [stderr] 43: 0x5602489ff8a0 - std::panic::catch_unwind::h5491b1948f80f254 [INFO] [stderr] at /rustc/c7f6aa2869acdbf014d094c6e427e554e160b6db/library/std/src/panic.rs:359:14 [INFO] [stderr] 44: 0x5602489ff8a0 - std::rt::lang_start_internal::{{closure}}::hf621f85e52fbc16b [INFO] [stderr] at /rustc/c7f6aa2869acdbf014d094c6e427e554e160b6db/library/std/src/rt.rs:175:24 [INFO] [stderr] 45: 0x5602489ff8a0 - std::panicking::catch_unwind::do_call::h2de2328545762ad7 [INFO] [stderr] at /rustc/c7f6aa2869acdbf014d094c6e427e554e160b6db/library/std/src/panicking.rs:590:40 [INFO] [stderr] 46: 0x5602489ff8a0 - std::panicking::catch_unwind::h544f60d1149df03e [INFO] [stderr] at /rustc/c7f6aa2869acdbf014d094c6e427e554e160b6db/library/std/src/panicking.rs:553:19 [INFO] [stderr] 47: 0x5602489ff8a0 - std::panic::catch_unwind::h90e123b5fe5a521c [INFO] [stderr] at /rustc/c7f6aa2869acdbf014d094c6e427e554e160b6db/library/std/src/panic.rs:359:14 [INFO] [stderr] 48: 0x5602489ff8a0 - std::rt::lang_start_internal::hce9ddc5b3402b0d3 [INFO] [stderr] at /rustc/c7f6aa2869acdbf014d094c6e427e554e160b6db/library/std/src/rt.rs:171:5 [INFO] [stderr] 49: 0x56024863fa91 - std::rt::lang_start::h259bb8191bc7c1cb [INFO] [stderr] 50: 0x560248641f45 - main [INFO] [stderr] 51: 0x76b2aaa531ca - [INFO] [stderr] 52: 0x76b2aaa5328b - __libc_start_main [INFO] [stderr] 53: 0x56024863ce45 - _start [INFO] [stderr] 54: 0x0 - [INFO] running `Command { std: "docker" "inspect" "062b4b806418ada96e5989e6219c6407dce99390d0bf66997a5c7fdf7f5aa064", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "062b4b806418ada96e5989e6219c6407dce99390d0bf66997a5c7fdf7f5aa064", kill_on_drop: false }` [INFO] [stdout] 062b4b806418ada96e5989e6219c6407dce99390d0bf66997a5c7fdf7f5aa064