[INFO] fetching crate phylofold 0.1.2...
[INFO] building phylofold-0.1.2 against master#c7f6aa2869acdbf014d094c6e427e554e160b6db for pr-146237-2
[INFO] extracting crate phylofold 0.1.2 into /workspace/builds/worker-3-tc1/source
[INFO] started tweaking crates.io crate phylofold 0.1.2
[INFO] finished tweaking crates.io crate phylofold 0.1.2
[INFO] tweaked toml for crates.io crate phylofold 0.1.2 written to /workspace/builds/worker-3-tc1/source/Cargo.toml
[INFO] validating manifest of crates.io crate phylofold 0.1.2 on toolchain c7f6aa2869acdbf014d094c6e427e554e160b6db
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c7f6aa2869acdbf014d094c6e427e554e160b6db" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate phylofold 0.1.2 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c7f6aa2869acdbf014d094c6e427e554e160b6db" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr] warning: no edition set: defaulting to the 2015 edition while the latest is 2024
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded hermit-abi v0.1.8
[INFO] [stderr]   Downloaded time v0.1.42
[INFO] [stderr]   Downloaded scoped_threadpool v0.1.9
[INFO] [stderr]   Downloaded itertools-num v0.1.3
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[INFO] [stderr]   Downloaded num-integer v0.1.42
[INFO] [stderr]   Downloaded approx v0.1.1
[INFO] [stderr]   Downloaded csv-core v0.1.10
[INFO] [stderr]   Downloaded serde_derive v1.0.104
[INFO] [stderr]   Downloaded bio v0.20.3
[INFO] [stderr]   Downloaded bit-set v0.4.0
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[INFO] [stderr]   Downloaded itoa v0.4.5
[INFO] [stderr]   Downloaded itertools v0.7.11
[INFO] [stderr]   Downloaded regex v0.2.11
[INFO] [stderr]   Downloaded bstr v0.2.11
[INFO] [stderr]   Downloaded ndarray v0.9.1
[INFO] [stderr]   Downloaded syn v1.0.16
[INFO] [stderr]   Downloaded regex-automata v0.1.9
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[INFO] [stderr]   Downloaded serde v1.0.104
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[INFO] [stderr]   Downloaded proc-macro2 v1.0.9
[INFO] [stderr]   Downloaded csv v1.1.3
[INFO] [stderr]   Downloaded unicode-width v0.1.7
[INFO] [stderr]   Downloaded ryu v1.0.2
[INFO] [stderr]   Downloaded byteorder v1.3.4
[INFO] [stderr]   Downloaded multimap v0.4.0
[INFO] [stderr]   Downloaded matrixmultiply v0.1.15
[INFO] [stderr]   Downloaded semver v0.1.20
[INFO] [stderr]   Downloaded rustc_version v0.1.7
[INFO] [stderr]   Downloaded newtype_derive v0.1.6
[INFO] [stderr]   Downloaded ordered-float v0.5.2
[INFO] [stderr]   Downloaded memchr v2.3.3
[INFO] [stderr]   Downloaded custom_derive v0.1.7
[INFO] [stderr]   Downloaded rawpointer v0.1.0
[INFO] [stderr]   Downloaded autocfg v1.0.0
[INFO] [stderr]   Downloaded num-traits v0.2.11
[INFO] [stderr]   Downloaded num-traits v0.1.43
[INFO] [stderr]   Downloaded aho-corasick v0.6.10
[INFO] [stderr]   Downloaded thread_local v0.3.6
[INFO] [stderr]   Downloaded utf8-ranges v1.0.4
[INFO] [stderr]   Downloaded quote v1.0.3
[INFO] [stderr]   Downloaded vec_map v0.8.1
[INFO] [stderr]   Downloaded getopts v0.2.21
[INFO] [stderr]   Downloaded either v1.5.3
[INFO] [stderr]   Downloaded lazy_static v0.1.16
[INFO] [stderr]   Downloaded bio-seq-algos v0.1.15
[INFO] [stderr]   Downloaded bv v0.7.4
[INFO] [stderr]   Downloaded bytecount v0.3.2
[INFO] [stderr]   Downloaded lazy_static v0.2.11
[INFO] [stderr]   Downloaded libc v0.2.67
[INFO] [stderr]   Downloaded rna-algos v0.1.14
[INFO] [stderr]   Downloaded ucd-util v0.1.7
[INFO] [stderr]   Downloaded itertools v0.6.5
[INFO] [stderr]   Downloaded rna-ss-params v0.1.16
[INFO] [stderr]   Downloaded phyloprob v0.1.2
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+c7f6aa2869acdbf014d094c6e427e554e160b6db" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] c62737b44084db2ef2a6bfebc48c570881a2dfc06e77de39f5688b31698ea74b
[INFO] running `Command { std: "docker" "start" "-a" "c62737b44084db2ef2a6bfebc48c570881a2dfc06e77de39f5688b31698ea74b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "c62737b44084db2ef2a6bfebc48c570881a2dfc06e77de39f5688b31698ea74b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "c62737b44084db2ef2a6bfebc48c570881a2dfc06e77de39f5688b31698ea74b", kill_on_drop: false }`
[INFO] [stdout] c62737b44084db2ef2a6bfebc48c570881a2dfc06e77de39f5688b31698ea74b
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+c7f6aa2869acdbf014d094c6e427e554e160b6db" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 7eb230ef09bc50d0f32b00ee36ea98bbe07f8770b7883f44fd9df64b4c14af0d
[INFO] running `Command { std: "docker" "start" "-a" "7eb230ef09bc50d0f32b00ee36ea98bbe07f8770b7883f44fd9df64b4c14af0d", kill_on_drop: false }`
[INFO] [stderr] warning: no edition set: defaulting to the 2015 edition while the latest is 2024
[INFO] [stderr]    Compiling autocfg v1.0.0
[INFO] [stderr]    Compiling proc-macro2 v1.0.9
[INFO] [stderr]    Compiling unicode-xid v0.2.0
[INFO] [stderr]    Compiling syn v1.0.16
[INFO] [stderr]    Compiling serde v1.0.104
[INFO] [stderr]    Compiling memchr v2.3.3
[INFO] [stderr]    Compiling byteorder v1.3.4
[INFO] [stderr]    Compiling libc v0.2.67
[INFO] [stderr]    Compiling lazy_static v1.4.0
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling either v1.5.3
[INFO] [stderr]    Compiling ryu v1.0.2
[INFO] [stderr]    Compiling matrixmultiply v0.1.15
[INFO] [stderr]    Compiling regex v0.2.11
[INFO] [stderr]    Compiling ucd-util v0.1.7
[INFO] [stderr]    Compiling bv v0.7.4
[INFO] [stderr]    Compiling rawpointer v0.1.0
[INFO] [stderr]    Compiling void v1.0.2
[INFO] [stderr]    Compiling ndarray v0.9.1
[INFO] [stderr]    Compiling regex-syntax v0.5.6
[INFO] [stderr]    Compiling thread_local v0.3.6
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling unreachable v1.0.0
[INFO] [stderr]    Compiling itertools v0.6.5
[INFO] [stderr]    Compiling num-traits v0.2.11
[INFO] [stderr]    Compiling num-integer v0.1.42
[INFO] [stderr]    Compiling lazy_static v0.1.16
[INFO] [stderr]    Compiling bit-vec v0.4.4
[INFO] [stderr]    Compiling itoa v0.4.5
[INFO] [stderr]    Compiling utf8-ranges v1.0.4
[INFO] [stderr]    Compiling csv-core v0.1.10
[INFO] [stderr]    Compiling aho-corasick v0.6.10
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling bit-set v0.4.0
[INFO] [stderr]    Compiling unicode-width v0.1.7
[INFO] [stderr]    Compiling quote v1.0.3
[INFO] [stderr]    Compiling bytecount v0.3.2
[INFO] [stderr]    Compiling approx v0.1.1
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling lazy_static v0.2.11
[INFO] [stderr]    Compiling getopts v0.2.21
[INFO] [stderr]    Compiling itertools v0.8.2
[INFO] [stderr]    Compiling scoped_threadpool v0.1.9
[INFO] [stderr]    Compiling itertools v0.7.11
[INFO] [stderr]    Compiling time v0.1.42
[INFO] [stderr]    Compiling num_cpus v1.12.0
[INFO] [stderr]    Compiling regex-automata v0.1.9
[INFO] [stderr]    Compiling fxhash v0.2.1
[INFO] [stderr]    Compiling num-traits v0.1.43
[INFO] [stderr]    Compiling num-complex v0.1.43
[INFO] [stderr]    Compiling ordered-float v0.5.2
[INFO] [stderr]    Compiling itertools-num v0.1.3
[INFO] [stderr]    Compiling bio-seq-algos v0.1.15
[INFO] [stderr]    Compiling rna-ss-params v0.1.16
[INFO] [stderr]    Compiling serde_derive v1.0.104
[INFO] [stderr]    Compiling bstr v0.2.11
[INFO] [stderr]    Compiling multimap v0.4.0
[INFO] [stderr]    Compiling vec_map v0.8.1
[INFO] [stderr]    Compiling csv v1.1.3
[INFO] [stderr]    Compiling bio v0.20.3
[INFO] [stderr]    Compiling rna-algos v0.1.14
[INFO] [stderr]    Compiling phyloprob v0.1.2
[INFO] [stderr]    Compiling phylofold v0.1.2 (/opt/rustwide/workdir)
[INFO] [stdout] warning: panic message is not a string literal
[INFO] [stdout]   --> src/main.rs:33:72
[INFO] [stdout]    |
[INFO] [stdout] 33 |     Err(failure) => {print_program_usage(&program_name, &opts); panic!(failure.to_string())}
[INFO] [stdout]    |                                                                        ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: this usage of `panic!()` is deprecated; it will be a hard error in Rust 2021
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/edition-guide/rust-2021/panic-macro-consistency.html>
[INFO] [stdout]    = note: `#[warn(non_fmt_panics)]` (part of `#[warn(rust_2021_compatibility)]`) on by default
[INFO] [stdout] help: add a "{}" format string to `Display` the message
[INFO] [stdout]    |
[INFO] [stdout] 33 |     Err(failure) => {print_program_usage(&program_name, &opts); panic!("{}", failure.to_string())}
[INFO] [stdout]    |                                                                        +++++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 20.20s
[INFO] running `Command { std: "docker" "inspect" "7eb230ef09bc50d0f32b00ee36ea98bbe07f8770b7883f44fd9df64b4c14af0d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "7eb230ef09bc50d0f32b00ee36ea98bbe07f8770b7883f44fd9df64b4c14af0d", kill_on_drop: false }`
[INFO] [stdout] 7eb230ef09bc50d0f32b00ee36ea98bbe07f8770b7883f44fd9df64b4c14af0d
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+c7f6aa2869acdbf014d094c6e427e554e160b6db" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 04f6aabc683cd484a77a4c08d14d5580dfb0b4149d8db37b82ea3c472b304628
[INFO] running `Command { std: "docker" "start" "-a" "04f6aabc683cd484a77a4c08d14d5580dfb0b4149d8db37b82ea3c472b304628", kill_on_drop: false }`
[INFO] [stderr] warning: no edition set: defaulting to the 2015 edition while the latest is 2024
[INFO] [stdout] warning: panic message is not a string literal
[INFO] [stdout]   --> src/main.rs:33:72
[INFO] [stdout]    |
[INFO] [stdout] 33 |     Err(failure) => {print_program_usage(&program_name, &opts); panic!(failure.to_string())}
[INFO] [stdout]    |                                                                        ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: this usage of `panic!()` is deprecated; it will be a hard error in Rust 2021
[INFO] [stdout]    = note: for more information, see <https://doc.rust-lang.org/edition-guide/rust-2021/panic-macro-consistency.html>
[INFO] [stdout]    = note: `#[warn(non_fmt_panics)]` (part of `#[warn(rust_2021_compatibility)]`) on by default
[INFO] [stdout] help: add a "{}" format string to `Display` the message
[INFO] [stdout]    |
[INFO] [stdout] 33 |     Err(failure) => {print_program_usage(&program_name, &opts); panic!("{}", failure.to_string())}
[INFO] [stdout]    |                                                                        +++++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]    Compiling phylofold v0.1.2 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.40s
[INFO] running `Command { std: "docker" "inspect" "04f6aabc683cd484a77a4c08d14d5580dfb0b4149d8db37b82ea3c472b304628", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "04f6aabc683cd484a77a4c08d14d5580dfb0b4149d8db37b82ea3c472b304628", kill_on_drop: false }`
[INFO] [stdout] 04f6aabc683cd484a77a4c08d14d5580dfb0b4149d8db37b82ea3c472b304628