[INFO] fetching crate ncbi-vdb-sys 0.1.6... [INFO] building ncbi-vdb-sys-0.1.6 against master#c7f6aa2869acdbf014d094c6e427e554e160b6db for pr-146237-2 [INFO] extracting crate ncbi-vdb-sys 0.1.6 into /workspace/builds/worker-1-tc1/source [INFO] removed /workspace/builds/worker-1-tc1/source/.cargo/config.toml [INFO] started tweaking crates.io crate ncbi-vdb-sys 0.1.6 [INFO] removed 0 missing examples [INFO] finished tweaking crates.io crate ncbi-vdb-sys 0.1.6 [INFO] tweaked toml for crates.io crate ncbi-vdb-sys 0.1.6 written to /workspace/builds/worker-1-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate ncbi-vdb-sys 0.1.6 on toolchain c7f6aa2869acdbf014d094c6e427e554e160b6db [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c7f6aa2869acdbf014d094c6e427e554e160b6db" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate ncbi-vdb-sys 0.1.6 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c7f6aa2869acdbf014d094c6e427e554e160b6db" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+c7f6aa2869acdbf014d094c6e427e554e160b6db" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 4eb6e4805348331893a8612f3e875642208b4dd41650ead9002befaf5c2a3a14 [INFO] running `Command { std: "docker" "start" "-a" "4eb6e4805348331893a8612f3e875642208b4dd41650ead9002befaf5c2a3a14", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "4eb6e4805348331893a8612f3e875642208b4dd41650ead9002befaf5c2a3a14", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "4eb6e4805348331893a8612f3e875642208b4dd41650ead9002befaf5c2a3a14", kill_on_drop: false }` [INFO] [stdout] 4eb6e4805348331893a8612f3e875642208b4dd41650ead9002befaf5c2a3a14 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+c7f6aa2869acdbf014d094c6e427e554e160b6db" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 0ea1fd902246ab35b5275b894b0323f90cab69fe2e29267fb4f65ce914242110 [INFO] running `Command { std: "docker" "start" "-a" "0ea1fd902246ab35b5275b894b0323f90cab69fe2e29267fb4f65ce914242110", kill_on_drop: false }` [INFO] [stderr] Compiling same-file v1.0.6 [INFO] [stderr] Compiling libc v0.2.172 [INFO] [stderr] Compiling syn v2.0.101 [INFO] [stderr] Compiling walkdir v2.5.0 [INFO] [stderr] Compiling num_cpus v1.16.0 [INFO] [stderr] Compiling ncbi-vdb-sys v0.1.6 (/opt/rustwide/workdir) [INFO] [stderr] error: failed to run custom build command for `ncbi-vdb-sys v0.1.6 (/opt/rustwide/workdir)` [INFO] [stderr] note: To improve backtraces for build dependencies, set the CARGO_PROFILE_DEV_BUILD_OVERRIDE_DEBUG=true environment variable to enable debug information generation. [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/ncbi-vdb-sys-eeeaaaa7b257f0af/build-script-build` (exit status: 101) [INFO] [stderr] --- stdout [INFO] [stderr] cargo:rerun-if-changed=build.rs [INFO] [stderr] cargo:rerun-if-changed=vendor/ncbi-vdb/libs [INFO] [stderr] cargo:rerun-if-changed=vendor/ncbi-vdb/interfaces [INFO] [stderr] cargo:rerun-if-changed=vendor/ncbi-vdb/setup/konfigure.perl [INFO] [stderr] cargo:rerun-if-changed=vendor/ncbi-vdb/Makefile.env [INFO] [stderr] Configuring NCBI-VDB package [INFO] [stderr] checking system type... Linux [INFO] [stderr] checking OS distributor... [INFO] [stderr] checking machine architecture... x86_64 [INFO] [stderr] checking for supported architecture... x86_64 (64 bits) is supported [INFO] [stderr] checking for supported OS... Linux (linux) is supported [INFO] [stderr] checking for supported tool chain... gcc tool chain is supported [INFO] [stderr] checking for gcc... gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0 [INFO] [stderr] checking for g++... yes [INFO] [stderr] checking for Python 3... /usr/bin/python3 [INFO] [stderr] checking whether g++ accepts -static-libstdc++... no [INFO] [stderr] checking for cmake... yes [INFO] [stderr] checking for fuse library... no [INFO] [stderr] checking for hdf5 library... no [INFO] [stderr] checking for magic library... no [INFO] [stderr] checking for xml2 library... no [INFO] [stderr] [INFO] [stderr] configure: creating 'build/ld.linux.exe_cmd.sh' [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] cannot open build/ld.linux.exe_cmd.sh to write at konfigure.perl line 885. [INFO] [stderr] [INFO] [stderr] thread 'main' (84) panicked at build.rs:37:13: [INFO] [stderr] Configure failed [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x623a48125782 - std::backtrace_rs::backtrace::libunwind::trace::ha2a9ae9e69b87a03 [INFO] [stderr] at /rustc/c7f6aa2869acdbf014d094c6e427e554e160b6db/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9 [INFO] [stderr] 1: 0x623a48125782 - std::backtrace_rs::backtrace::trace_unsynchronized::h7757f80677e51a33 [INFO] [stderr] at /rustc/c7f6aa2869acdbf014d094c6e427e554e160b6db/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14 [INFO] [stderr] 2: 0x623a48125782 - std::sys::backtrace::_print_fmt::h6552c7cfff6c56fd [INFO] [stderr] at /rustc/c7f6aa2869acdbf014d094c6e427e554e160b6db/library/std/src/sys/backtrace.rs:66:9 [INFO] [stderr] 3: 0x623a48125782 - ::fmt::h8094475e363f1053 [INFO] [stderr] at /rustc/c7f6aa2869acdbf014d094c6e427e554e160b6db/library/std/src/sys/backtrace.rs:39:26 [INFO] [stderr] 4: 0x623a48134d0f - core::fmt::rt::Argument::fmt::h88a25a51f53034c0 [INFO] [stderr] at /rustc/c7f6aa2869acdbf014d094c6e427e554e160b6db/library/core/src/fmt/rt.rs:173:76 [INFO] [stderr] 5: 0x623a48134d0f - core::fmt::write::h501eb1fe28dabfbb [INFO] [stderr] at /rustc/c7f6aa2869acdbf014d094c6e427e554e160b6db/library/core/src/fmt/mod.rs:1468:25 [INFO] [stderr] 6: 0x623a480fb1b1 - std::io::default_write_fmt::h992ad3fe47aac8bd [INFO] [stderr] at /rustc/c7f6aa2869acdbf014d094c6e427e554e160b6db/library/std/src/io/mod.rs:639:11 [INFO] [stderr] 7: 0x623a480fb1b1 - std::io::Write::write_fmt::h8b96bc323947a405 [INFO] [stderr] at /rustc/c7f6aa2869acdbf014d094c6e427e554e160b6db/library/std/src/io/mod.rs:1954:13 [INFO] [stderr] 8: 0x623a48104aa2 - std::sys::backtrace::BacktraceLock::print::h7aea9e658d3d67e5 [INFO] [stderr] at /rustc/c7f6aa2869acdbf014d094c6e427e554e160b6db/library/std/src/sys/backtrace.rs:42:9 [INFO] [stderr] 9: 0x623a481067ec - std::panicking::default_hook::{{closure}}::h9182baa5e2ff55c0 [INFO] [stderr] at /rustc/c7f6aa2869acdbf014d094c6e427e554e160b6db/library/std/src/panicking.rs:301:27 [INFO] [stderr] 10: 0x623a48106646 - std::panicking::default_hook::hfb4945b05f344c7f [INFO] [stderr] at /rustc/c7f6aa2869acdbf014d094c6e427e554e160b6db/library/std/src/panicking.rs:328:9 [INFO] [stderr] 11: 0x623a48106e75 - std::panicking::panic_with_hook::h56e601fd3ec36096 [INFO] [stderr] at /rustc/c7f6aa2869acdbf014d094c6e427e554e160b6db/library/std/src/panicking.rs:834:13 [INFO] [stderr] 12: 0x623a48106cd6 - std::panicking::panic_handler::{{closure}}::h1609d3c3912948cb [INFO] [stderr] at /rustc/c7f6aa2869acdbf014d094c6e427e554e160b6db/library/std/src/panicking.rs:700:13 [INFO] [stderr] 13: 0x623a48104bd9 - std::sys::backtrace::__rust_end_short_backtrace::h03d671aa8d777602 [INFO] [stderr] at /rustc/c7f6aa2869acdbf014d094c6e427e554e160b6db/library/std/src/sys/backtrace.rs:174:18 [INFO] [stderr] 14: 0x623a480ef9dd - __rustc[aa3aaccdf5d52e38]::rust_begin_unwind [INFO] [stderr] at /rustc/c7f6aa2869acdbf014d094c6e427e554e160b6db/library/std/src/panicking.rs:698:5 [INFO] [stderr] 15: 0x623a48138340 - core::panicking::panic_fmt::h2ccb5f5950fb2ea3 [INFO] [stderr] at /rustc/c7f6aa2869acdbf014d094c6e427e554e160b6db/library/core/src/panicking.rs:78:14 [INFO] [stderr] 16: 0x623a480d2fcb - build_script_build::main::h881289738e267626 [INFO] [stderr] 17: 0x623a480d3803 - core::ops::function::FnOnce::call_once::hbc00e328e87fe797 [INFO] [stderr] 18: 0x623a480d3496 - std::sys::backtrace::__rust_begin_short_backtrace::h3617262e9d5dcf6f [INFO] [stderr] 19: 0x623a480d3389 - std::rt::lang_start::{{closure}}::hbb0fcf5870cfd667 [INFO] [stderr] 20: 0x623a480fcab0 - core::ops::function::impls:: for &F>::call_once::haefda49eac6aabe3 [INFO] [stderr] at /rustc/c7f6aa2869acdbf014d094c6e427e554e160b6db/library/core/src/ops/function.rs:287:21 [INFO] [stderr] 21: 0x623a480fcab0 - std::panicking::catch_unwind::do_call::hf37797e2fddac2f0 [INFO] [stderr] at /rustc/c7f6aa2869acdbf014d094c6e427e554e160b6db/library/std/src/panicking.rs:590:40 [INFO] [stderr] 22: 0x623a480fcab0 - std::panicking::catch_unwind::h909d1e8985436f28 [INFO] [stderr] at /rustc/c7f6aa2869acdbf014d094c6e427e554e160b6db/library/std/src/panicking.rs:553:19 [INFO] [stderr] 23: 0x623a480fcab0 - std::panic::catch_unwind::h5491b1948f80f254 [INFO] [stderr] at /rustc/c7f6aa2869acdbf014d094c6e427e554e160b6db/library/std/src/panic.rs:359:14 [INFO] [stderr] 24: 0x623a480fcab0 - std::rt::lang_start_internal::{{closure}}::hf621f85e52fbc16b [INFO] [stderr] at /rustc/c7f6aa2869acdbf014d094c6e427e554e160b6db/library/std/src/rt.rs:175:24 [INFO] [stderr] 25: 0x623a480fcab0 - std::panicking::catch_unwind::do_call::h2de2328545762ad7 [INFO] [stderr] at /rustc/c7f6aa2869acdbf014d094c6e427e554e160b6db/library/std/src/panicking.rs:590:40 [INFO] [stderr] 26: 0x623a480fcab0 - std::panicking::catch_unwind::h544f60d1149df03e [INFO] [stderr] at /rustc/c7f6aa2869acdbf014d094c6e427e554e160b6db/library/std/src/panicking.rs:553:19 [INFO] [stderr] 27: 0x623a480fcab0 - std::panic::catch_unwind::h90e123b5fe5a521c [INFO] [stderr] at /rustc/c7f6aa2869acdbf014d094c6e427e554e160b6db/library/std/src/panic.rs:359:14 [INFO] [stderr] 28: 0x623a480fcab0 - std::rt::lang_start_internal::hce9ddc5b3402b0d3 [INFO] [stderr] at /rustc/c7f6aa2869acdbf014d094c6e427e554e160b6db/library/std/src/rt.rs:171:5 [INFO] [stderr] 29: 0x623a480d3371 - std::rt::lang_start::h23808543f4f9ba6d [INFO] [stderr] 30: 0x623a480d6695 - main [INFO] [stderr] 31: 0x703817b7e1ca - [INFO] [stderr] 32: 0x703817b7e28b - __libc_start_main [INFO] [stderr] 33: 0x623a480d25b5 - _start [INFO] [stderr] 34: 0x0 - [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] running `Command { std: "docker" "inspect" "0ea1fd902246ab35b5275b894b0323f90cab69fe2e29267fb4f65ce914242110", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "0ea1fd902246ab35b5275b894b0323f90cab69fe2e29267fb4f65ce914242110", kill_on_drop: false }` [INFO] [stdout] 0ea1fd902246ab35b5275b894b0323f90cab69fe2e29267fb4f65ce914242110