[INFO] fetching crate biodiff 1.2.1...
[INFO] building biodiff-1.2.1 against master#c7f6aa2869acdbf014d094c6e427e554e160b6db for pr-146237-2
[INFO] extracting crate biodiff 1.2.1 into /workspace/builds/worker-5-tc1/source
[INFO] started tweaking crates.io crate biodiff 1.2.1
[INFO] finished tweaking crates.io crate biodiff 1.2.1
[INFO] tweaked toml for crates.io crate biodiff 1.2.1 written to /workspace/builds/worker-5-tc1/source/Cargo.toml
[INFO] validating manifest of crates.io crate biodiff 1.2.1 on toolchain c7f6aa2869acdbf014d094c6e427e554e160b6db
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c7f6aa2869acdbf014d094c6e427e554e160b6db" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate biodiff 1.2.1 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c7f6aa2869acdbf014d094c6e427e554e160b6db" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded snapbox-macros v0.3.8
[INFO] [stderr]   Downloaded snapbox v0.5.9
[INFO] [stderr]   Downloaded fastrand v2.0.2
[INFO] [stderr]   Downloaded toml_datetime v0.6.5
[INFO] [stderr]   Downloaded similar v2.5.0
[INFO] [stderr]   Downloaded ordered-float v3.9.2
[INFO] [stderr]   Downloaded winnow v0.6.6
[INFO] [stderr]   Downloaded bio-types v1.0.1
[INFO] [stderr]   Downloaded derive-new v0.5.9
[INFO] [stderr]   Downloaded owning_ref v0.4.1
[INFO] [stderr]   Downloaded getrandom v0.2.14
[INFO] [stderr]   Downloaded thiserror-impl v1.0.58
[INFO] [stderr]   Downloaded anyhow v1.0.82
[INFO] [stderr]   Downloaded wide v0.7.15
[INFO] [stderr]   Downloaded statrs v0.16.0
[INFO] [stderr]   Downloaded bio v1.6.0
[INFO] [stderr]   Downloaded biodiff-wfa2-sys v2.3.5
[INFO] [stderr]   Downloaded cc v1.0.92
[INFO] [stderr]   Downloaded cursive_core v0.3.7
[INFO] [stderr]   Downloaded cursive v0.20.0
[INFO] [stderr]   Downloaded time v0.3.35
[INFO] [stderr]   Downloaded matrixmultiply v0.3.8
[INFO] [stderr]   Downloaded safe_arch v0.7.1
[INFO] [stderr]   Downloaded hexagex v0.2.3
[INFO] [stderr]   Downloaded ndarray v0.15.6
[INFO] [stderr]   Downloaded humantime-serde v1.1.1
[INFO] [stderr]   Downloaded content_inspector v0.2.4
[INFO] [stderr]   Downloaded multimap v0.9.1
[INFO] [stderr]   Downloaded rustversion v1.0.15
[INFO] [stderr]   Downloaded cmake v0.1.50
[INFO] [stderr]   Downloaded nalgebra v0.29.0
[INFO] [stderr]   Downloaded clap_derive v4.5.4
[INFO] [stderr]   Downloaded num-iter v0.1.44
[INFO] [stderr]   Downloaded enumset v1.1.3
[INFO] [stderr]   Downloaded num-complex v0.4.5
[INFO] [stderr]   Downloaded primal-check v0.3.3
[INFO] [stderr]   Downloaded os_pipe v1.1.5
[INFO] [stderr]   Downloaded bytecount v0.6.7
[INFO] [stderr]   Downloaded simba v0.6.0
[INFO] [stderr]   Downloaded num-rational v0.4.1
[INFO] [stderr]   Downloaded cursive_buffered_backend v0.6.1
[INFO] [stderr]   Downloaded toml_edit v0.22.12
[INFO] [stderr]   Downloaded num v0.4.1
[INFO] [stderr]   Downloaded enumset_derive v0.8.1
[INFO] [stderr]   Downloaded thiserror v1.0.58
[INFO] [stderr]   Downloaded serde_spanned v0.6.5
[INFO] [stderr]   Downloaded trycmd v0.15.1
[INFO] [stderr]   Downloaded csv v1.3.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+c7f6aa2869acdbf014d094c6e427e554e160b6db" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 7f4e543a1b5dd8982c93204fb063f990eefb05448e86741bba87608f0b9cfd07
[INFO] running `Command { std: "docker" "start" "-a" "7f4e543a1b5dd8982c93204fb063f990eefb05448e86741bba87608f0b9cfd07", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "7f4e543a1b5dd8982c93204fb063f990eefb05448e86741bba87608f0b9cfd07", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "7f4e543a1b5dd8982c93204fb063f990eefb05448e86741bba87608f0b9cfd07", kill_on_drop: false }`
[INFO] [stdout] 7f4e543a1b5dd8982c93204fb063f990eefb05448e86741bba87608f0b9cfd07
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+c7f6aa2869acdbf014d094c6e427e554e160b6db" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 6c16b6876713fb38c20b07516424aa591b9eb41ed5fe9c517b937cbad3ba5b68
[INFO] running `Command { std: "docker" "start" "-a" "6c16b6876713fb38c20b07516424aa591b9eb41ed5fe9c517b937cbad3ba5b68", kill_on_drop: false }`
[INFO] [stderr]    Compiling autocfg v1.2.0
[INFO] [stderr]    Compiling proc-macro2 v1.0.79
[INFO] [stderr]    Compiling libm v0.2.8
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]    Compiling memchr v2.7.2
[INFO] [stderr]    Compiling serde v1.0.197
[INFO] [stderr]    Compiling itoa v1.0.11
[INFO] [stderr]    Compiling crossbeam-utils v0.8.19
[INFO] [stderr]    Compiling ppv-lite86 v0.2.17
[INFO] [stderr]    Compiling bytemuck v1.15.0
[INFO] [stderr]    Compiling log v0.4.21
[INFO] [stderr]    Compiling paste v1.0.14
[INFO] [stderr]    Compiling ahash v0.8.11
[INFO] [stderr]    Compiling rustversion v1.0.15
[INFO] [stderr]    Compiling getrandom v0.2.14
[INFO] [stderr]    Compiling regex-syntax v0.8.3
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling safe_arch v0.7.1
[INFO] [stderr]    Compiling signal-hook v0.3.17
[INFO] [stderr]    Compiling parking_lot_core v0.9.9
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling rand_core v0.6.4
[INFO] [stderr]    Compiling deranged v0.3.11
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[INFO] [stderr]    Compiling thiserror v1.0.58
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]    Compiling once_cell v1.19.0
[INFO] [stderr]    Compiling zerocopy v0.7.32
[INFO] [stderr]    Compiling cc v1.0.92
[INFO] [stderr]    Compiling rand_chacha v0.3.1
[INFO] [stderr]    Compiling num-traits v0.2.18
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[INFO] [stderr]    Compiling matrixmultiply v0.3.8
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[INFO] [stderr]    Compiling lock_api v0.4.11
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[INFO] [stderr]    Compiling stable_deref_trait v1.2.0
[INFO] [stderr]    Compiling crossbeam-channel v0.5.12
[INFO] [stderr]    Compiling owning_ref v0.4.1
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[INFO] [stderr]    Compiling unicode-segmentation v1.11.0
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[INFO] [stderr]    Compiling anstyle v1.0.6
[INFO] [stderr]    Compiling indexmap v2.2.6
[INFO] [stderr]    Compiling parking_lot v0.12.1
[INFO] [stderr]    Compiling csv-core v0.1.11
[INFO] [stderr]    Compiling biodiff-wfa2-sys v2.3.5
[INFO] [stderr]    Compiling bit-vec v0.6.3
[INFO] [stderr]    Compiling either v1.10.0
[INFO] [stderr]    Compiling num-integer v0.1.46
[INFO] [stderr]    Compiling num-complex v0.4.5
[INFO] [stderr]    Compiling approx v0.5.1
[INFO] [stderr]    Compiling rand_distr v0.4.3
[INFO] [stderr]    Compiling anstream v0.6.13
[INFO] [stderr]    Compiling signal-hook-mio v0.2.3
[INFO] [stderr]    Compiling serde_json v1.0.115
[INFO] [stderr]    Compiling clap_lex v0.7.0
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[INFO] [stderr]    Compiling fixedbitset v0.4.2
[INFO] [stderr]    Compiling crossterm v0.25.0
[INFO] [stderr]    Compiling dirs-sys v0.4.1
[INFO] [stderr]    Compiling fxhash v0.2.1
[INFO] [stderr]    Compiling num-iter v0.1.44
[INFO] [stderr]    Compiling primal-check v0.3.3
[INFO] [stderr]    Compiling transpose v0.2.3
[INFO] [stderr]    Compiling clap_builder v4.5.2
[INFO] [stderr]    Compiling ndarray v0.15.6
[INFO] [stderr]    Compiling bit-set v0.5.3
[INFO] [stderr]    Compiling itertools v0.11.0
[INFO] [stderr]    Compiling petgraph v0.6.4
[INFO] [stderr]    Compiling itertools-num v0.1.3
[INFO] [stderr]    Compiling ordered-float v3.9.2
[INFO] [stderr]    Compiling regex-automata v0.4.6
[INFO] [stderr]    Compiling simba v0.6.0
[INFO] [stderr]    Compiling num v0.4.1
[INFO] [stderr]    Compiling editdistancek v1.0.2
[INFO] [stderr]    Compiling strum v0.25.0
[INFO] [stderr]    Compiling triple_accel v0.4.0
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling bytecount v0.6.7
[INFO] [stderr]    Compiling dirs v5.0.1
[INFO] [stderr]    Compiling nalgebra-macros v0.1.0
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]    Compiling darling_core v0.20.8
[INFO] [stderr]    Compiling serde_derive v1.0.197
[INFO] [stderr]    Compiling enum-map-derive v0.17.0
[INFO] [stderr]    Compiling thiserror-impl v1.0.58
[INFO] [stderr]    Compiling strum_macros v0.25.3
[INFO] [stderr]    Compiling clap_derive v4.5.4
[INFO] [stderr]    Compiling regex v1.10.4
[INFO] [stderr]    Compiling enum-map v2.7.3
[INFO] [stderr]    Compiling hexagex v0.2.3
[INFO] [stderr]    Compiling realfft v3.3.0
[INFO] [stderr]    Compiling bio-types v1.0.1
[INFO] [stderr]    Compiling darling_macro v0.20.8
[INFO] [stderr]    Compiling clap v4.5.4
[INFO] [stderr]    Compiling darling v0.20.8
[INFO] [stderr]    Compiling enumset_derive v0.8.1
[INFO] [stderr]    Compiling enumset v1.1.3
[INFO] [stderr]    Compiling nalgebra v0.29.0
[INFO] [stderr]    Compiling cursive_core v0.3.7
[INFO] [stderr]    Compiling cursive_buffered_backend v0.6.1
[INFO] [stderr]    Compiling cursive v0.20.0
[INFO] [stderr]    Compiling vec_map v0.8.2
[INFO] [stderr]    Compiling multimap v0.9.1
[INFO] [stderr]    Compiling csv v1.3.0
[INFO] [stderr]    Compiling statrs v0.16.0
[INFO] [stderr]    Compiling bio v1.6.0
[INFO] [stderr]    Compiling biodiff v1.2.1 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 36s
[INFO] running `Command { std: "docker" "inspect" "6c16b6876713fb38c20b07516424aa591b9eb41ed5fe9c517b937cbad3ba5b68", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "6c16b6876713fb38c20b07516424aa591b9eb41ed5fe9c517b937cbad3ba5b68", kill_on_drop: false }`
[INFO] [stdout] 6c16b6876713fb38c20b07516424aa591b9eb41ed5fe9c517b937cbad3ba5b68
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+c7f6aa2869acdbf014d094c6e427e554e160b6db" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] f34a8f6431a2e801d0b6b0b4b967c40cf83cafe17740d3f379389abe996f59a9
[INFO] running `Command { std: "docker" "start" "-a" "f34a8f6431a2e801d0b6b0b4b967c40cf83cafe17740d3f379389abe996f59a9", kill_on_drop: false }`
[INFO] [stderr]    Compiling memchr v2.7.2
[INFO] [stderr]    Compiling crossbeam-utils v0.8.19
[INFO] [stderr]    Compiling rustix v0.38.32
[INFO] [stderr]    Compiling bitflags v2.5.0
[INFO] [stderr]    Compiling linux-raw-sys v0.4.13
[INFO] [stderr]    Compiling rayon-core v1.12.1
[INFO] [stderr]    Compiling fastrand v2.0.2
[INFO] [stderr]    Compiling toml_datetime v0.6.5
[INFO] [stderr]    Compiling walkdir v2.5.0
[INFO] [stderr]    Compiling serde_spanned v0.6.5
[INFO] [stderr]    Compiling snapbox-macros v0.3.8
[INFO] [stderr]    Compiling wait-timeout v0.2.0
[INFO] [stderr]    Compiling os_pipe v1.1.5
[INFO] [stderr]    Compiling dunce v1.0.4
[INFO] [stderr]    Compiling winnow v0.6.6
[INFO] [stderr]    Compiling similar v2.5.0
[INFO] [stderr]    Compiling humantime-serde v1.1.1
[INFO] [stderr]    Compiling glob v0.3.1
[INFO] [stderr]    Compiling shlex v1.3.0
[INFO] [stderr]    Compiling crossbeam-channel v0.5.12
[INFO] [stderr]    Compiling crossbeam-epoch v0.9.18
[INFO] [stderr]    Compiling aho-corasick v1.1.3
[INFO] [stderr]    Compiling csv-core v0.1.11
[INFO] [stderr]    Compiling content_inspector v0.2.4
[INFO] [stderr]    Compiling csv v1.3.0
[INFO] [stderr]    Compiling crossbeam-deque v0.8.5
[INFO] [stderr]    Compiling cursive_core v0.3.7
[INFO] [stderr]    Compiling rayon v1.10.0
[INFO] [stderr]    Compiling toml_edit v0.22.12
[INFO] [stderr]    Compiling regex-automata v0.4.6
[INFO] [stderr]    Compiling tempfile v3.10.1
[INFO] [stderr]    Compiling snapbox v0.5.9
[INFO] [stderr]    Compiling trycmd v0.15.1
[INFO] [stderr]    Compiling cursive_buffered_backend v0.6.1
[INFO] [stderr]    Compiling cursive v0.20.0
[INFO] [stderr]    Compiling regex v1.10.4
[INFO] [stderr]    Compiling bio-types v1.0.1
[INFO] [stderr]    Compiling hexagex v0.2.3
[INFO] [stderr]    Compiling bio v1.6.0
[INFO] [stderr]    Compiling biodiff v1.2.1 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 55.46s
[INFO] running `Command { std: "docker" "inspect" "f34a8f6431a2e801d0b6b0b4b967c40cf83cafe17740d3f379389abe996f59a9", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "f34a8f6431a2e801d0b6b0b4b967c40cf83cafe17740d3f379389abe996f59a9", kill_on_drop: false }`
[INFO] [stdout] f34a8f6431a2e801d0b6b0b4b967c40cf83cafe17740d3f379389abe996f59a9