[INFO] cloning repository https://github.com/stela2502/bam_tide
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/stela2502/bam_tide" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fstela2502%2Fbam_tide", kill_on_drop: false }`
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[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] e64ac02708b743ad37ae0bcea3a25bb9bcc35fec
[INFO] building stela2502/bam_tide against master#c7f6aa2869acdbf014d094c6e427e554e160b6db for pr-146237-2
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fstela2502%2Fbam_tide" "/workspace/builds/worker-7-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-7-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/stela2502/bam_tide
[INFO] finished tweaking git repo https://github.com/stela2502/bam_tide
[INFO] tweaked toml for git repo https://github.com/stela2502/bam_tide written to /workspace/builds/worker-7-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/stela2502/bam_tide on toolchain c7f6aa2869acdbf014d094c6e427e554e160b6db
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c7f6aa2869acdbf014d094c6e427e554e160b6db" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/stela2502/bam_tide already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c7f6aa2869acdbf014d094c6e427e554e160b6db" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
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[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+c7f6aa2869acdbf014d094c6e427e554e160b6db" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
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[INFO] running `Command { std: "docker" "start" "-a" "8333c592f2296f0087eb07f32c7e956d9312ae16dd498abbc5ab2fad56088bb1", kill_on_drop: false }`
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[INFO] [stdout] 4436801f27549a48d68c74271682bb93ae695b580cc7b9de12c15145cc1d8c91
[INFO] running `Command { std: "docker" "start" "-a" "4436801f27549a48d68c74271682bb93ae695b580cc7b9de12c15145cc1d8c91", kill_on_drop: false }`
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[INFO] [stderr]    Compiling openssl v0.10.73
[INFO] [stderr]    Compiling rust-htslib v0.49.0
[INFO] [stderr]    Compiling bam_tide v0.4.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused import: `scdata::scdata::MatrixValueType`
[INFO] [stdout]   --> src/mutation_processor.rs:18:5
[INFO] [stdout]    |
[INFO] [stdout] 18 | use scdata::scdata::MatrixValueType;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `min_mapping_quality`
[INFO] [stdout]    --> src/bed_data/bed_data.rs:259:73
[INFO] [stdout]     |
[INFO] [stdout] 259 |         cell_tag: &[u8;2], umi_tag: &[u8;2], add_introns:bool, only_r1: bool, min_mapping_quality:u8 ) {
[INFO] [stdout]     |                                                                               ^^^^^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_min_mapping_quality`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 4m 10s
[INFO] running `Command { std: "docker" "inspect" "4436801f27549a48d68c74271682bb93ae695b580cc7b9de12c15145cc1d8c91", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "4436801f27549a48d68c74271682bb93ae695b580cc7b9de12c15145cc1d8c91", kill_on_drop: false }`
[INFO] [stdout] 4436801f27549a48d68c74271682bb93ae695b580cc7b9de12c15145cc1d8c91
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+c7f6aa2869acdbf014d094c6e427e554e160b6db" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] cd34ef008f7d4cfc95d004905ca1e1fad3c38d32795a574ffdd819c7dfaec3e1
[INFO] running `Command { std: "docker" "start" "-a" "cd34ef008f7d4cfc95d004905ca1e1fad3c38d32795a574ffdd819c7dfaec3e1", kill_on_drop: false }`
[INFO] [stdout] warning: unused import: `scdata::scdata::MatrixValueType`
[INFO] [stdout]   --> src/mutation_processor.rs:18:5
[INFO] [stdout]    |
[INFO] [stdout] 18 | use scdata::scdata::MatrixValueType;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `min_mapping_quality`
[INFO] [stdout]    --> src/bed_data/bed_data.rs:259:73
[INFO] [stdout]     |
[INFO] [stdout] 259 |         cell_tag: &[u8;2], umi_tag: &[u8;2], add_introns:bool, only_r1: bool, min_mapping_quality:u8 ) {
[INFO] [stdout]     |                                                                               ^^^^^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_min_mapping_quality`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]    Compiling bam_tide v0.4.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused import: `std::process::exit`
[INFO] [stdout]  --> tests/test-bam2mut_hist.rs:2:5
[INFO] [stdout]   |
[INFO] [stdout] 2 | use std::process::exit;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::collections::HashMap`
[INFO] [stdout]    --> src/bed_data/bed_data.rs:637:9
[INFO] [stdout]     |
[INFO] [stdout] 637 |     use std::collections::HashMap;
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::path::Path`
[INFO] [stdout]    --> src/bed_data/bed_data.rs:804:9
[INFO] [stdout]     |
[INFO] [stdout] 804 |     use std::path::Path;
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `min_mapping_quality`
[INFO] [stdout]    --> src/bed_data/bed_data.rs:259:73
[INFO] [stdout]     |
[INFO] [stdout] 259 |         cell_tag: &[u8;2], umi_tag: &[u8;2], add_introns:bool, only_r1: bool, min_mapping_quality:u8 ) {
[INFO] [stdout]     |                                                                               ^^^^^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_min_mapping_quality`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 8.09s
[INFO] running `Command { std: "docker" "inspect" "cd34ef008f7d4cfc95d004905ca1e1fad3c38d32795a574ffdd819c7dfaec3e1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "cd34ef008f7d4cfc95d004905ca1e1fad3c38d32795a574ffdd819c7dfaec3e1", kill_on_drop: false }`
[INFO] [stdout] cd34ef008f7d4cfc95d004905ca1e1fad3c38d32795a574ffdd819c7dfaec3e1