[INFO] cloning repository https://github.com/noahcape/seqproc-spotcheck [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/noahcape/seqproc-spotcheck" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fnoahcape%2Fseqproc-spotcheck", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fnoahcape%2Fseqproc-spotcheck'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 24a50d12d20216bb3157dddc4280f1a3b60016ec [INFO] building noahcape/seqproc-spotcheck against master#c7f6aa2869acdbf014d094c6e427e554e160b6db for pr-146237-2 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fnoahcape%2Fseqproc-spotcheck" "/workspace/builds/worker-3-tc1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-3-tc1/source'... [INFO] [stderr] done. [INFO] started tweaking git repo https://github.com/noahcape/seqproc-spotcheck [INFO] finished tweaking git repo https://github.com/noahcape/seqproc-spotcheck [INFO] tweaked toml for git repo https://github.com/noahcape/seqproc-spotcheck written to /workspace/builds/worker-3-tc1/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/noahcape/seqproc-spotcheck on toolchain c7f6aa2869acdbf014d094c6e427e554e160b6db [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c7f6aa2869acdbf014d094c6e427e554e160b6db" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/noahcape/seqproc-spotcheck already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c7f6aa2869acdbf014d094c6e427e554e160b6db" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded strum v0.24.1 [INFO] [stderr] Downloaded strum_macros v0.24.3 [INFO] [stderr] Downloaded clap v4.5.14 [INFO] [stderr] Downloaded fxhash v0.2.1 [INFO] [stderr] Downloaded newtype_derive v0.1.6 [INFO] [stderr] Downloaded strum v0.25.0 [INFO] [stderr] Downloaded vec_map v0.8.2 [INFO] [stderr] Downloaded ordered-float v3.9.2 [INFO] [stderr] Downloaded enum-map v2.7.3 [INFO] [stderr] Downloaded approx v0.5.1 [INFO] [stderr] Downloaded editdistancek v1.0.2 [INFO] [stderr] Downloaded enum-map-derive v0.17.0 [INFO] [stderr] Downloaded nalgebra-macros v0.1.0 [INFO] [stderr] Downloaded regex-automata v0.1.10 [INFO] [stderr] Downloaded bytecount v0.6.8 [INFO] [stderr] Downloaded itertools-num v0.1.3 [INFO] [stderr] Downloaded rustc_version v0.1.7 [INFO] [stderr] Downloaded bio-types v1.0.4 [INFO] [stderr] Downloaded num-rational v0.4.2 [INFO] [stderr] Downloaded num-complex v0.4.6 [INFO] [stderr] Downloaded triple_accel v0.4.0 [INFO] [stderr] Downloaded strum_macros v0.25.3 [INFO] [stderr] Downloaded derive-new v0.6.0 [INFO] [stderr] Downloaded custom_derive v0.1.7 [INFO] [stderr] Downloaded semver v0.1.20 [INFO] [stderr] Downloaded read-structure v0.2.0 [INFO] [stderr] Downloaded bytemuck v1.16.3 [INFO] [stderr] Downloaded multimap v0.9.1 [INFO] [stderr] Downloaded csv-core v0.1.11 [INFO] [stderr] Downloaded matrixmultiply v0.3.9 [INFO] [stderr] Downloaded serde_derive v1.0.207 [INFO] [stderr] Downloaded serde v1.0.207 [INFO] [stderr] Downloaded simba v0.6.0 [INFO] [stderr] Downloaded indexmap v2.4.0 [INFO] [stderr] Downloaded rand_distr v0.4.3 [INFO] [stderr] Downloaded wide v0.7.28 [INFO] [stderr] Downloaded safe_arch v0.7.2 [INFO] [stderr] Downloaded itertools v0.11.0 [INFO] [stderr] Downloaded statrs v0.16.1 [INFO] [stderr] Downloaded clap_builder v4.5.14 [INFO] [stderr] Downloaded bio v1.6.0 [INFO] [stderr] Downloaded regex v1.10.6 [INFO] [stderr] Downloaded syn v2.0.72 [INFO] [stderr] Downloaded bstr v0.2.17 [INFO] [stderr] Downloaded nalgebra v0.29.0 [INFO] [stderr] Downloaded csv v1.3.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+c7f6aa2869acdbf014d094c6e427e554e160b6db" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] b9333842dfb30e28ea6f3d86cd1caac72c6141751e2d4e0d4daf86eb0de84ee7 [INFO] running `Command { std: "docker" "start" "-a" "b9333842dfb30e28ea6f3d86cd1caac72c6141751e2d4e0d4daf86eb0de84ee7", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "b9333842dfb30e28ea6f3d86cd1caac72c6141751e2d4e0d4daf86eb0de84ee7", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "b9333842dfb30e28ea6f3d86cd1caac72c6141751e2d4e0d4daf86eb0de84ee7", kill_on_drop: false }` [INFO] [stdout] b9333842dfb30e28ea6f3d86cd1caac72c6141751e2d4e0d4daf86eb0de84ee7 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+c7f6aa2869acdbf014d094c6e427e554e160b6db" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 5a0dc2a54b000dd0813f787e29b677e5d615a3f2a0143eb4a954e9847db43152 [INFO] running `Command { std: "docker" "start" "-a" "5a0dc2a54b000dd0813f787e29b677e5d615a3f2a0143eb4a954e9847db43152", kill_on_drop: false }` [INFO] [stderr] Compiling autocfg v1.3.0 [INFO] [stderr] Compiling libm v0.2.8 [INFO] [stderr] Compiling libc v0.2.155 [INFO] [stderr] Compiling byteorder v1.5.0 [INFO] [stderr] Compiling memchr v2.7.4 [INFO] [stderr] Compiling syn v1.0.109 [INFO] [stderr] Compiling syn v2.0.72 [INFO] [stderr] Compiling serde v1.0.207 [INFO] [stderr] Compiling bytemuck v1.16.3 [INFO] [stderr] Compiling rawpointer v0.2.1 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling matrixmultiply v0.3.9 [INFO] [stderr] Compiling thiserror v1.0.63 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling safe_arch v0.7.2 [INFO] [stderr] Compiling heck v0.5.0 [INFO] [stderr] Compiling lazy_static v1.5.0 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling aho-corasick v1.1.3 [INFO] [stderr] Compiling utf8parse v0.2.2 [INFO] [stderr] Compiling getrandom v0.2.15 [INFO] [stderr] Compiling wide v0.7.28 [INFO] [stderr] Compiling regex-syntax v0.8.4 [INFO] [stderr] Compiling rand_core v0.6.4 [INFO] [stderr] Compiling heck v0.4.1 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Compiling num-complex v0.4.6 [INFO] [stderr] Compiling num-integer v0.1.46 [INFO] [stderr] Compiling approx v0.5.1 [INFO] [stderr] Compiling anstyle-parse v0.2.5 [INFO] [stderr] Compiling num-rational v0.4.2 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling is_terminal_polyfill v1.70.1 [INFO] [stderr] Compiling anstyle v1.0.8 [INFO] [stderr] Compiling simba v0.6.0 [INFO] [stderr] Compiling anyhow v1.0.86 [INFO] [stderr] Compiling anstyle-query v1.1.1 [INFO] [stderr] Compiling hashbrown v0.14.5 [INFO] [stderr] Compiling colorchoice v1.0.2 [INFO] [stderr] Compiling anstream v0.6.15 [INFO] [stderr] Compiling csv-core v0.1.11 [INFO] [stderr] Compiling strsim v0.11.1 [INFO] [stderr] Compiling indexmap v2.4.0 [INFO] [stderr] Compiling bit-vec v0.6.3 [INFO] [stderr] Compiling fixedbitset v0.4.2 [INFO] [stderr] Compiling either v1.13.0 [INFO] [stderr] Compiling regex-automata v0.4.7 [INFO] [stderr] Compiling regex-automata v0.1.10 [INFO] [stderr] Compiling clap_lex v0.7.2 [INFO] [stderr] Compiling bstr v0.2.17 [INFO] [stderr] Compiling petgraph v0.6.5 [INFO] [stderr] Compiling clap_builder v4.5.14 [INFO] [stderr] Compiling itertools v0.11.0 [INFO] [stderr] Compiling bit-set v0.5.3 [INFO] [stderr] Compiling nalgebra-macros v0.1.0 [INFO] [stderr] Compiling strum_macros v0.24.3 [INFO] [stderr] Compiling ndarray v0.15.6 [INFO] [stderr] Compiling ordered-float v3.9.2 [INFO] [stderr] Compiling zerocopy-derive v0.7.35 [INFO] [stderr] Compiling serde_derive v1.0.207 [INFO] [stderr] Compiling thiserror-impl v1.0.63 [INFO] [stderr] Compiling zerocopy v0.7.35 [INFO] [stderr] Compiling regex v1.10.6 [INFO] [stderr] Compiling ppv-lite86 v0.2.20 [INFO] [stderr] Compiling strum_macros v0.26.4 [INFO] [stderr] Compiling enum-map-derive v0.17.0 [INFO] [stderr] Compiling rand_chacha v0.3.1 [INFO] [stderr] Compiling derive-new v0.6.0 [INFO] [stderr] Compiling rand v0.8.5 [INFO] [stderr] Compiling enum-map v2.7.3 [INFO] [stderr] Compiling strum_macros v0.25.3 [INFO] [stderr] Compiling clap_derive v4.5.13 [INFO] [stderr] Compiling itertools-num v0.1.3 [INFO] [stderr] Compiling fxhash v0.2.1 [INFO] [stderr] Compiling triple_accel v0.4.0 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling editdistancek v1.0.2 [INFO] [stderr] Compiling bytecount v0.6.8 [INFO] [stderr] Compiling strum v0.24.1 [INFO] [stderr] Compiling rand_distr v0.4.3 [INFO] [stderr] Compiling strum v0.25.0 [INFO] [stderr] Compiling read-structure v0.2.0 [INFO] [stderr] Compiling bio-types v1.0.4 [INFO] [stderr] Compiling nalgebra v0.29.0 [INFO] [stderr] Compiling clap v4.5.14 [INFO] [stderr] Compiling multimap v0.9.1 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling csv v1.3.0 [INFO] [stderr] Compiling statrs v0.16.1 [INFO] [stderr] Compiling bio v1.6.0 [INFO] [stderr] Compiling seqproc_paper_benchmarking v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 43s [INFO] running `Command { std: "docker" "inspect" "5a0dc2a54b000dd0813f787e29b677e5d615a3f2a0143eb4a954e9847db43152", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "5a0dc2a54b000dd0813f787e29b677e5d615a3f2a0143eb4a954e9847db43152", kill_on_drop: false }` [INFO] [stdout] 5a0dc2a54b000dd0813f787e29b677e5d615a3f2a0143eb4a954e9847db43152 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+c7f6aa2869acdbf014d094c6e427e554e160b6db" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] e38958ec4e2aa131df4c673a281a5dc513902494f5d0f12709000135315e234a [INFO] running `Command { std: "docker" "start" "-a" "e38958ec4e2aa131df4c673a281a5dc513902494f5d0f12709000135315e234a", kill_on_drop: false }` [INFO] [stderr] Compiling seqproc_paper_benchmarking v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: function `write_fastqs` is never used [INFO] [stdout] --> src/main.rs:505:8 [INFO] [stdout] | [INFO] [stdout] 505 | fn write_fastqs(outf: &mut File, records: Vec) -> Result<(), Error> { [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 1.04s [INFO] running `Command { std: "docker" "inspect" "e38958ec4e2aa131df4c673a281a5dc513902494f5d0f12709000135315e234a", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "e38958ec4e2aa131df4c673a281a5dc513902494f5d0f12709000135315e234a", kill_on_drop: false }` [INFO] [stdout] e38958ec4e2aa131df4c673a281a5dc513902494f5d0f12709000135315e234a