[INFO] cloning repository https://github.com/ncsa/rusty-neat [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/ncsa/rusty-neat" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fncsa%2Frusty-neat", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fncsa%2Frusty-neat'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] d13e7c0ce682d23f0b64cdbd31b101792c9444f7 [INFO] building ncsa/rusty-neat against master#c7f6aa2869acdbf014d094c6e427e554e160b6db for pr-146237-2 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fncsa%2Frusty-neat" "/workspace/builds/worker-2-tc1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-2-tc1/source'... [INFO] [stderr] done. [INFO] started tweaking git repo https://github.com/ncsa/rusty-neat [INFO] finished tweaking git repo https://github.com/ncsa/rusty-neat [INFO] tweaked toml for git repo https://github.com/ncsa/rusty-neat written to /workspace/builds/worker-2-tc1/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/ncsa/rusty-neat on toolchain c7f6aa2869acdbf014d094c6e427e554e160b6db [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c7f6aa2869acdbf014d094c6e427e554e160b6db" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/ncsa/rusty-neat already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c7f6aa2869acdbf014d094c6e427e554e160b6db" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded vectorize v0.2.0 [INFO] [stderr] Downloaded winapi-util v0.1.11 [INFO] [stderr] Downloaded serde_derive v1.0.225 [INFO] [stderr] Downloaded predicates-tree v1.0.12 [INFO] [stderr] Downloaded clap_derive v4.5.47 [INFO] [stderr] Downloaded rust_search v2.1.0 [INFO] [stderr] Downloaded serde v1.0.225 [INFO] [stderr] Downloaded globwalk v0.9.1 [INFO] [stderr] Downloaded iana-time-zone v0.1.64 [INFO] [stderr] Downloaded doc-comment v0.3.3 [INFO] [stderr] Downloaded predicates v3.1.3 [INFO] [stderr] Downloaded termtree v0.5.1 [INFO] [stderr] Downloaded assert_fs v1.1.3 [INFO] [stderr] Downloaded clap_builder v4.5.47 [INFO] [stderr] Downloaded bincode v2.0.1 [INFO] [stderr] Downloaded hashbrown v0.16.0 [INFO] [stderr] Downloaded statrs v0.18.0 [INFO] [stderr] Downloaded unicode-width v0.2.1 [INFO] [stderr] Downloaded rayon v1.11.0 [INFO] [stderr] Downloaded nalgebra v0.33.2 [INFO] [stderr] Downloaded serde_yml v0.0.12 [INFO] [stderr] Downloaded libz-ng-sys v1.1.22 [INFO] [stderr] Downloaded libyml v0.0.5 [INFO] [stderr] Downloaded safe_arch v0.7.4 [INFO] [stderr] Downloaded wide v0.7.33 [INFO] [stderr] Downloaded errno v0.3.14 [INFO] [stderr] Downloaded rayon-core v1.13.0 [INFO] [stderr] Downloaded unit-prefix v0.5.1 [INFO] [stderr] Downloaded indicatif v0.18.0 [INFO] [stderr] Downloaded unty v0.0.4 [INFO] [stderr] Downloaded rustix v1.1.2 [INFO] [stderr] Downloaded bytemuck v1.23.2 [INFO] [stderr] Downloaded libredox v0.1.10 [INFO] [stderr] Downloaded bincode_derive v2.0.1 [INFO] [stderr] Downloaded matrixmultiply v0.3.10 [INFO] [stderr] Downloaded serde_core v1.0.225 [INFO] [stderr] Downloaded console v0.16.1 [INFO] [stderr] Downloaded hermit-abi v0.5.2 [INFO] [stderr] Downloaded num_cpus v1.17.0 [INFO] [stderr] Downloaded virtue v0.0.18 [INFO] [stderr] Downloaded predicates-core v1.0.9 [INFO] [stderr] Downloaded clap v4.5.47 [INFO] [stderr] Downloaded simplelog v0.12.2 [INFO] [stderr] Downloaded simba v0.9.1 [INFO] [stderr] Downloaded windows-core v0.62.0 [INFO] [stderr] Downloaded chrono v0.4.42 [INFO] [stderr] Downloaded windows-strings v0.5.0 [INFO] [stderr] Downloaded cmake v0.1.54 [INFO] [stderr] Downloaded windows-result v0.4.0 [INFO] [stderr] Downloaded linux-raw-sys v0.11.0 [INFO] [stderr] Downloaded rawpointer v0.2.1 [INFO] [stderr] Downloaded tempfile v3.22.0 [INFO] [stderr] Downloaded indexmap v2.11.4 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+c7f6aa2869acdbf014d094c6e427e554e160b6db" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] fb6a489f6ef9382f2d5dd85392a640571ebabeb16ca94a2dcf2a21990aa6c099 [INFO] running `Command { std: "docker" "start" "-a" "fb6a489f6ef9382f2d5dd85392a640571ebabeb16ca94a2dcf2a21990aa6c099", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "fb6a489f6ef9382f2d5dd85392a640571ebabeb16ca94a2dcf2a21990aa6c099", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "fb6a489f6ef9382f2d5dd85392a640571ebabeb16ca94a2dcf2a21990aa6c099", kill_on_drop: false }` [INFO] [stdout] fb6a489f6ef9382f2d5dd85392a640571ebabeb16ca94a2dcf2a21990aa6c099 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+c7f6aa2869acdbf014d094c6e427e554e160b6db" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 53e4f506fdc034873d8d6e0139fa53bdd6008c95ed0e915bce317dcedab34335 [INFO] running `Command { std: "docker" "start" "-a" "53e4f506fdc034873d8d6e0139fa53bdd6008c95ed0e915bce317dcedab34335", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.175 [INFO] [stderr] Compiling autocfg v1.5.0 [INFO] [stderr] Compiling proc-macro2 v1.0.101 [INFO] [stderr] Compiling libm v0.2.15 [INFO] [stderr] Compiling unicode-ident v1.0.19 [INFO] [stderr] Compiling cfg-if v1.0.3 [INFO] [stderr] Compiling memchr v2.7.5 [INFO] [stderr] Compiling crossbeam-utils v0.8.21 [INFO] [stderr] Compiling zerocopy v0.8.27 [INFO] [stderr] Compiling log v0.4.28 [INFO] [stderr] Compiling find-msvc-tools v0.1.2 [INFO] [stderr] Compiling regex-syntax v0.8.6 [INFO] [stderr] Compiling serde_core v1.0.225 [INFO] [stderr] Compiling shlex v1.3.0 [INFO] [stderr] Compiling same-file v1.0.6 [INFO] [stderr] Compiling paste v1.0.15 [INFO] [stderr] Compiling bytemuck v1.23.2 [INFO] [stderr] Compiling serde v1.0.225 [INFO] [stderr] Compiling safe_arch v0.7.4 [INFO] [stderr] Compiling walkdir v2.5.0 [INFO] [stderr] Compiling getrandom v0.3.3 [INFO] [stderr] Compiling cc v1.2.38 [INFO] [stderr] Compiling itoa v1.0.15 [INFO] [stderr] Compiling anstyle v1.0.11 [INFO] [stderr] Compiling typenum v1.18.0 [INFO] [stderr] Compiling bitflags v2.9.4 [INFO] [stderr] Compiling rustix v1.1.2 [INFO] [stderr] Compiling anyhow v1.0.99 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling matrixmultiply v0.3.10 [INFO] [stderr] Compiling once_cell v1.21.3 [INFO] [stderr] Compiling crossbeam-epoch v0.9.18 [INFO] [stderr] Compiling aho-corasick v1.1.3 [INFO] [stderr] Compiling bstr v1.12.0 [INFO] [stderr] Compiling quote v1.0.40 [INFO] [stderr] Compiling crossbeam-deque v0.8.6 [INFO] [stderr] Compiling wide v0.7.33 [INFO] [stderr] Compiling rayon-core v1.13.0 [INFO] [stderr] Compiling either v1.15.0 [INFO] [stderr] Compiling rawpointer v0.2.1 [INFO] [stderr] Compiling getrandom v0.2.16 [INFO] [stderr] Compiling syn v2.0.106 [INFO] [stderr] Compiling linux-raw-sys v0.11.0 [INFO] [stderr] Compiling cmake v0.1.54 [INFO] [stderr] Compiling rand_core v0.6.4 [INFO] [stderr] Compiling crc32fast v1.5.0 [INFO] [stderr] Compiling utf8parse v0.2.2 [INFO] [stderr] Compiling thiserror v2.0.16 [INFO] [stderr] Compiling anstyle-parse v0.2.7 [INFO] [stderr] Compiling serde_yml v0.0.12 [INFO] [stderr] Compiling portable-atomic v1.11.1 [INFO] [stderr] Compiling serde_json v1.0.145 [INFO] [stderr] Compiling doc-comment v0.3.3 [INFO] [stderr] Compiling equivalent v1.0.2 [INFO] [stderr] Compiling colorchoice v1.0.4 [INFO] [stderr] Compiling ryu v1.0.20 [INFO] [stderr] Compiling libz-ng-sys v1.1.22 [INFO] [stderr] Compiling anstyle-query v1.1.4 [INFO] [stderr] Compiling num-complex v0.4.6 [INFO] [stderr] Compiling regex-automata v0.4.10 [INFO] [stderr] Compiling num-integer v0.1.46 [INFO] [stderr] Compiling approx v0.5.1 [INFO] [stderr] Compiling predicates-core v1.0.9 [INFO] [stderr] Compiling hashbrown v0.16.0 [INFO] [stderr] Compiling is_terminal_polyfill v1.70.1 [INFO] [stderr] Compiling virtue v0.0.18 [INFO] [stderr] Compiling iana-time-zone v0.1.64 [INFO] [stderr] Compiling ppv-lite86 v0.2.21 [INFO] [stderr] Compiling time-core v0.1.6 [INFO] [stderr] Compiling chrono v0.4.42 [INFO] [stderr] Compiling time-macros v0.2.24 [INFO] [stderr] Compiling simba v0.9.1 [INFO] [stderr] Compiling num-rational v0.4.2 [INFO] [stderr] Compiling anstream v0.6.20 [INFO] [stderr] Compiling deranged v0.5.3 [INFO] [stderr] Compiling rand_chacha v0.3.1 [INFO] [stderr] Compiling libyml v0.0.5 [INFO] [stderr] Compiling bincode_derive v2.0.1 [INFO] [stderr] Compiling rand v0.8.5 [INFO] [stderr] Compiling tempfile v3.22.0 [INFO] [stderr] Compiling indexmap v2.11.4 [INFO] [stderr] Compiling rand_distr v0.4.3 [INFO] [stderr] Compiling dirs-sys v0.3.7 [INFO] [stderr] Compiling unty v0.0.4 [INFO] [stderr] Compiling difflib v0.4.0 [INFO] [stderr] Compiling clap_lex v0.7.5 [INFO] [stderr] Compiling heck v0.5.0 [INFO] [stderr] Compiling unicode-width v0.2.1 [INFO] [stderr] Compiling num_threads v0.1.7 [INFO] [stderr] Compiling strsim v0.11.1 [INFO] [stderr] Compiling termtree v0.5.1 [INFO] [stderr] Compiling clap_builder v4.5.47 [INFO] [stderr] Compiling globset v0.4.16 [INFO] [stderr] Compiling predicates-tree v1.0.12 [INFO] [stderr] Compiling console v0.16.1 [INFO] [stderr] Compiling regex v1.11.2 [INFO] [stderr] Compiling time v0.3.44 [INFO] [stderr] Compiling predicates v3.1.3 [INFO] [stderr] Compiling rayon v1.11.0 [INFO] [stderr] Compiling dirs v4.0.0 [INFO] [stderr] Compiling bincode v2.0.1 [INFO] [stderr] Compiling ignore v0.4.23 [INFO] [stderr] Compiling itertools v0.14.0 [INFO] [stderr] Compiling num_cpus v1.17.0 [INFO] [stderr] Compiling termcolor v1.4.1 [INFO] [stderr] Compiling lazy_static v1.5.0 [INFO] [stderr] Compiling unit-prefix v0.5.1 [INFO] [stderr] Compiling strsim v0.10.0 [INFO] [stderr] Compiling globwalk v0.9.1 [INFO] [stderr] Compiling rust_search v2.1.0 [INFO] [stderr] Compiling serde_derive v1.0.225 [INFO] [stderr] Compiling thiserror-impl v2.0.16 [INFO] [stderr] Compiling clap_derive v4.5.47 [INFO] [stderr] Compiling simplelog v0.12.2 [INFO] [stderr] Compiling assert_fs v1.1.3 [INFO] [stderr] Compiling simple_rng v1.2.0 (/opt/rustwide/workdir/simple_rng) [INFO] [stderr] Compiling indicatif v0.18.0 [INFO] [stderr] Compiling clap v4.5.47 [INFO] [stderr] Compiling nalgebra v0.33.2 [INFO] [stderr] Compiling vectorize v0.2.0 [INFO] [stderr] Compiling flate2 v1.1.2 [INFO] [stderr] Compiling statrs v0.18.0 [INFO] [stderr] Compiling common v1.2.0 (/opt/rustwide/workdir/common) [INFO] [stdout] warning: unused import: `log::*` [INFO] [stdout] --> common/src/structs/bed_record.rs:3:5 [INFO] [stdout] | [INFO] [stdout] 3 | use log::*; [INFO] [stdout] | ^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `error` [INFO] [stdout] --> common/src/models/snp_trinuc_model.rs:9:11 [INFO] [stdout] | [INFO] [stdout] 9 | use log::{error, debug}; [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `error` [INFO] [stdout] --> common/src/file_tools/fastq_tools.rs:7:18 [INFO] [stdout] | [INFO] [stdout] 7 | use log::{debug, error, warn}; [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Compiling rneat v1.2.0 (/opt/rustwide/workdir/rneat) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 14s [INFO] running `Command { std: "docker" "inspect" "53e4f506fdc034873d8d6e0139fa53bdd6008c95ed0e915bce317dcedab34335", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "53e4f506fdc034873d8d6e0139fa53bdd6008c95ed0e915bce317dcedab34335", kill_on_drop: false }` [INFO] [stdout] 53e4f506fdc034873d8d6e0139fa53bdd6008c95ed0e915bce317dcedab34335 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+c7f6aa2869acdbf014d094c6e427e554e160b6db" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 3e8cbaed43b1a12c17d8200d5702839b060bc5aafeb175b1674c8b63758ea0c8 [INFO] running `Command { std: "docker" "start" "-a" "3e8cbaed43b1a12c17d8200d5702839b060bc5aafeb175b1674c8b63758ea0c8", kill_on_drop: false }` [INFO] [stdout] warning: unused import: `log::*` [INFO] [stdout] --> common/src/structs/bed_record.rs:3:5 [INFO] [stdout] | [INFO] [stdout] 3 | use log::*; [INFO] [stdout] | ^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `error` [INFO] [stdout] --> common/src/models/snp_trinuc_model.rs:9:11 [INFO] [stdout] | [INFO] [stdout] 9 | use log::{error, debug}; [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `error` [INFO] [stdout] --> common/src/file_tools/fastq_tools.rs:7:18 [INFO] [stdout] | [INFO] [stdout] 7 | use log::{debug, error, warn}; [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Compiling common v1.2.0 (/opt/rustwide/workdir/common) [INFO] [stderr] Compiling simple_rng v1.2.0 (/opt/rustwide/workdir/simple_rng) [INFO] [stderr] Compiling rneat v1.2.0 (/opt/rustwide/workdir/rneat) [INFO] [stdout] warning: unused import: `log::*` [INFO] [stdout] --> common/src/structs/bed_record.rs:3:5 [INFO] [stdout] | [INFO] [stdout] 3 | use log::*; [INFO] [stdout] | ^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `error` [INFO] [stdout] --> common/src/models/snp_trinuc_model.rs:9:11 [INFO] [stdout] | [INFO] [stdout] 9 | use log::{error, debug}; [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `error` [INFO] [stdout] --> common/src/file_tools/fastq_tools.rs:7:18 [INFO] [stdout] | [INFO] [stdout] 7 | use log::{debug, error, warn}; [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 4.08s [INFO] running `Command { std: "docker" "inspect" "3e8cbaed43b1a12c17d8200d5702839b060bc5aafeb175b1674c8b63758ea0c8", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "3e8cbaed43b1a12c17d8200d5702839b060bc5aafeb175b1674c8b63758ea0c8", kill_on_drop: false }` [INFO] [stdout] 3e8cbaed43b1a12c17d8200d5702839b060bc5aafeb175b1674c8b63758ea0c8