[INFO] cloning repository https://github.com/natir/vcf2parquet [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/natir/vcf2parquet" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fnatir%2Fvcf2parquet", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fnatir%2Fvcf2parquet'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 66d63d31e88f65732ad7b331857f0c29171000c1 [INFO] building natir/vcf2parquet against master#c7f6aa2869acdbf014d094c6e427e554e160b6db for pr-146237-2 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fnatir%2Fvcf2parquet" "/workspace/builds/worker-4-tc1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-4-tc1/source'... [INFO] [stderr] done. [INFO] started tweaking git repo https://github.com/natir/vcf2parquet [INFO] finished tweaking git repo https://github.com/natir/vcf2parquet [INFO] tweaked toml for git repo https://github.com/natir/vcf2parquet written to /workspace/builds/worker-4-tc1/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/natir/vcf2parquet on toolchain c7f6aa2869acdbf014d094c6e427e554e160b6db [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c7f6aa2869acdbf014d094c6e427e554e160b6db" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/natir/vcf2parquet already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c7f6aa2869acdbf014d094c6e427e554e160b6db" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded seq-macro v0.3.5 [INFO] [stderr] Downloaded snap v1.1.1 [INFO] [stderr] Downloaded integer-encoding v3.0.4 [INFO] [stderr] Downloaded twox-hash v1.6.3 [INFO] [stderr] Downloaded termtree v0.4.1 [INFO] [stderr] Downloaded lz4_flex v0.11.3 [INFO] [stderr] Downloaded thrift v0.17.0 [INFO] [stderr] Downloaded predicates-core v1.0.8 [INFO] [stderr] Downloaded predicates-tree v1.0.11 [INFO] [stderr] Downloaded noodles-core v0.14.0 [INFO] [stderr] Downloaded liblzma v0.3.5 [INFO] [stderr] Downloaded arrow-arith v53.3.0 [INFO] [stderr] Downloaded arrow-string v53.3.0 [INFO] [stderr] Downloaded lexical-write-integer v1.0.2 [INFO] [stderr] Downloaded noodles-bgzf v0.26.0 [INFO] [stderr] Downloaded arrow-ord v53.3.0 [INFO] [stderr] Downloaded noodles-vcf v0.49.0 [INFO] [stderr] Downloaded lexical-write-float v1.0.2 [INFO] [stderr] Downloaded lexical-parse-float v1.0.2 [INFO] [stderr] Downloaded lexical-util v1.0.3 [INFO] [stderr] Downloaded arrow-ipc v53.3.0 [INFO] [stderr] Downloaded arrow-buffer v53.3.0 [INFO] [stderr] Downloaded bstr v1.11.0 [INFO] [stderr] Downloaded rustix v0.38.41 [INFO] [stderr] Downloaded arrow v53.3.0 [INFO] [stderr] Downloaded predicates v3.1.2 [INFO] [stderr] Downloaded parquet v53.3.0 [INFO] [stderr] Downloaded bgzip v0.3.1 [INFO] [stderr] Downloaded arrow-cast v53.3.0 [INFO] [stderr] Downloaded noodles-tabix v0.36.0 [INFO] [stderr] Downloaded noodles v0.64.0 [INFO] [stderr] Downloaded const-random v0.1.18 [INFO] [stderr] Downloaded arrow-schema v53.3.0 [INFO] [stderr] Downloaded liblzma-sys v0.3.9 [INFO] [stderr] Downloaded noodles-csi v0.30.0 [INFO] [stderr] Downloaded arrow-data v53.3.0 [INFO] [stderr] Downloaded arrow-row v53.3.0 [INFO] [stderr] Downloaded const-random-macro v0.1.16 [INFO] [stderr] Downloaded clap_builder v4.5.23 [INFO] [stderr] Downloaded arrow-array v53.3.0 [INFO] [stderr] Downloaded arrow-select v53.3.0 [INFO] [stderr] Downloaded clap v4.5.23 [INFO] [stderr] Downloaded niffler v2.6.0 [INFO] [stderr] Downloaded lexical-parse-integer v1.0.2 [INFO] [stderr] Downloaded lexical-core v1.0.2 [INFO] [stderr] Downloaded flatbuffers v24.3.25 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+c7f6aa2869acdbf014d094c6e427e554e160b6db" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] f41494c0ffb3e02b3cb0c43d63cadcc027cd25eb7a3e6cbf962ec96cf7572aa5 [INFO] running `Command { std: "docker" "start" "-a" "f41494c0ffb3e02b3cb0c43d63cadcc027cd25eb7a3e6cbf962ec96cf7572aa5", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "f41494c0ffb3e02b3cb0c43d63cadcc027cd25eb7a3e6cbf962ec96cf7572aa5", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "f41494c0ffb3e02b3cb0c43d63cadcc027cd25eb7a3e6cbf962ec96cf7572aa5", kill_on_drop: false }` [INFO] [stdout] f41494c0ffb3e02b3cb0c43d63cadcc027cd25eb7a3e6cbf962ec96cf7572aa5 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+c7f6aa2869acdbf014d094c6e427e554e160b6db" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 8ddf94bfc0f4e4762879f056c2bf26f6bd8aba9ebb7da9fe5fe3131265c8e57f [INFO] running `Command { std: "docker" "start" "-a" "8ddf94bfc0f4e4762879f056c2bf26f6bd8aba9ebb7da9fe5fe3131265c8e57f", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.167 [INFO] [stderr] Compiling libm v0.2.11 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling crossbeam-utils v0.8.20 [INFO] [stderr] Compiling ahash v0.8.11 [INFO] [stderr] Compiling once_cell v1.20.2 [INFO] [stderr] Compiling arrow-schema v53.3.0 [INFO] [stderr] Compiling iana-time-zone v0.1.61 [INFO] [stderr] Compiling miniz_oxide v0.8.0 [INFO] [stderr] Compiling quote v1.0.37 [INFO] [stderr] Compiling lexical-util v1.0.3 [INFO] [stderr] Compiling syn v2.0.90 [INFO] [stderr] Compiling byteorder v1.5.0 [INFO] [stderr] Compiling flate2 v1.0.35 [INFO] [stderr] Compiling lexical-parse-integer v1.0.2 [INFO] [stderr] Compiling lexical-write-integer v1.0.2 [INFO] [stderr] Compiling rustc_version v0.4.1 [INFO] [stderr] Compiling lexical-write-float v1.0.2 [INFO] [stderr] Compiling crossbeam-channel v0.5.13 [INFO] [stderr] Compiling lexical-parse-float v1.0.2 [INFO] [stderr] Compiling flatbuffers v24.3.25 [INFO] [stderr] Compiling regex-syntax v0.8.5 [INFO] [stderr] Compiling jobserver v0.1.32 [INFO] [stderr] Compiling getrandom v0.2.15 [INFO] [stderr] Compiling num-integer v0.1.46 [INFO] [stderr] Compiling num-complex v0.4.6 [INFO] [stderr] Compiling cc v1.2.2 [INFO] [stderr] Compiling half v2.4.1 [INFO] [stderr] Compiling chrono v0.4.38 [INFO] [stderr] Compiling num-bigint v0.4.6 [INFO] [stderr] Compiling num-iter v0.1.45 [INFO] [stderr] Compiling lexical-core v1.0.2 [INFO] [stderr] Compiling noodles-bgzf v0.26.0 [INFO] [stderr] Compiling atoi v2.0.0 [INFO] [stderr] Compiling noodles-core v0.14.0 [INFO] [stderr] Compiling bit-vec v0.6.3 [INFO] [stderr] Compiling utf8parse v0.2.2 [INFO] [stderr] Compiling anstyle-parse v0.2.6 [INFO] [stderr] Compiling crossbeam-epoch v0.9.18 [INFO] [stderr] Compiling noodles-csi v0.30.0 [INFO] [stderr] Compiling colorchoice v1.0.3 [INFO] [stderr] Compiling anstyle v1.0.10 [INFO] [stderr] Compiling anstyle-query v1.1.2 [INFO] [stderr] Compiling snap v1.1.1 [INFO] [stderr] Compiling num-rational v0.4.2 [INFO] [stderr] Compiling rayon-core v1.12.1 [INFO] [stderr] Compiling is_terminal_polyfill v1.70.1 [INFO] [stderr] Compiling anstream v0.6.18 [INFO] [stderr] Compiling zstd-sys v2.0.13+zstd.1.5.6 [INFO] [stderr] Compiling num v0.4.3 [INFO] [stderr] Compiling arrow-buffer v53.3.0 [INFO] [stderr] Compiling bzip2-sys v0.1.11+1.0.8 [INFO] [stderr] Compiling liblzma-sys v0.3.9 [INFO] [stderr] Compiling regex-automata v0.4.9 [INFO] [stderr] Compiling noodles-tabix v0.36.0 [INFO] [stderr] Compiling arrow-data v53.3.0 [INFO] [stderr] Compiling crossbeam-deque v0.8.5 [INFO] [stderr] Compiling ordered-float v2.10.1 [INFO] [stderr] Compiling thiserror-impl v1.0.69 [INFO] [stderr] Compiling twox-hash v1.6.3 [INFO] [stderr] Compiling strsim v0.11.1 [INFO] [stderr] Compiling arrow-array v53.3.0 [INFO] [stderr] Compiling integer-encoding v3.0.4 [INFO] [stderr] Compiling thiserror v2.0.4 [INFO] [stderr] Compiling clap_lex v0.7.4 [INFO] [stderr] Compiling clap_derive v4.5.18 [INFO] [stderr] Compiling clap_builder v4.5.23 [INFO] [stderr] Compiling thiserror v1.0.69 [INFO] [stderr] Compiling bgzip v0.3.1 [INFO] [stderr] Compiling thrift v0.17.0 [INFO] [stderr] Compiling noodles-vcf v0.49.0 [INFO] [stderr] Compiling regex v1.11.1 [INFO] [stderr] Compiling lz4_flex v0.11.3 [INFO] [stderr] Compiling arrow-select v53.3.0 [INFO] [stderr] Compiling arrow-arith v53.3.0 [INFO] [stderr] Compiling arrow-row v53.3.0 [INFO] [stderr] Compiling arrow-cast v53.3.0 [INFO] [stderr] Compiling liblzma v0.3.5 [INFO] [stderr] Compiling arrow-ord v53.3.0 [INFO] [stderr] Compiling arrow-string v53.3.0 [INFO] [stderr] Compiling bzip2 v0.4.4 [INFO] [stderr] Compiling thiserror-impl v2.0.4 [INFO] [stderr] Compiling brotli v7.0.0 [INFO] [stderr] Compiling arrow-ipc v53.3.0 [INFO] [stderr] Compiling seq-macro v0.3.5 [INFO] [stderr] Compiling rayon v1.10.0 [INFO] [stderr] Compiling arrow v53.3.0 [INFO] [stderr] Compiling noodles v0.64.0 [INFO] [stderr] Compiling clap v4.5.23 [INFO] [stderr] Compiling rustc-hash v2.1.0 [INFO] [stderr] Compiling zstd-safe v7.2.1 [INFO] [stderr] Compiling zstd v0.13.2 [INFO] [stderr] Compiling niffler v2.6.0 [INFO] [stderr] Compiling parquet v53.3.0 [INFO] [stderr] Compiling vcf2parquet v0.6.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 2m 44s [INFO] running `Command { std: "docker" "inspect" "8ddf94bfc0f4e4762879f056c2bf26f6bd8aba9ebb7da9fe5fe3131265c8e57f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "8ddf94bfc0f4e4762879f056c2bf26f6bd8aba9ebb7da9fe5fe3131265c8e57f", kill_on_drop: false }` [INFO] [stdout] 8ddf94bfc0f4e4762879f056c2bf26f6bd8aba9ebb7da9fe5fe3131265c8e57f [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+c7f6aa2869acdbf014d094c6e427e554e160b6db" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 9c964f4fb57647bb32fad03dd59c89c5bd91073af3eebc913d4d868b47f8a604 [INFO] running `Command { std: "docker" "start" "-a" "9c964f4fb57647bb32fad03dd59c89c5bd91073af3eebc913d4d868b47f8a604", kill_on_drop: false }` [INFO] [stderr] Compiling once_cell v1.20.2 [INFO] [stderr] Compiling regex-automata v0.4.9 [INFO] [stderr] Compiling rustix v0.38.41 [INFO] [stderr] Compiling predicates-core v1.0.8 [INFO] [stderr] Compiling doc-comment v0.3.3 [INFO] [stderr] Compiling bitflags v2.6.0 [INFO] [stderr] Compiling termtree v0.4.1 [INFO] [stderr] Compiling linux-raw-sys v0.4.14 [INFO] [stderr] Compiling difflib v0.4.0 [INFO] [stderr] Compiling assert_cmd v2.0.16 [INFO] [stderr] Compiling ahash v0.8.11 [INFO] [stderr] Compiling predicates-tree v1.0.11 [INFO] [stderr] Compiling wait-timeout v0.2.0 [INFO] [stderr] Compiling fastrand v2.2.0 [INFO] [stderr] Compiling predicates v3.1.2 [INFO] [stderr] Compiling arrow-array v53.3.0 [INFO] [stderr] Compiling tempfile v3.14.0 [INFO] [stderr] Compiling arrow-select v53.3.0 [INFO] [stderr] Compiling arrow-row v53.3.0 [INFO] [stderr] Compiling arrow-arith v53.3.0 [INFO] [stderr] Compiling regex v1.11.1 [INFO] [stderr] Compiling bstr v1.11.0 [INFO] [stderr] Compiling arrow-cast v53.3.0 [INFO] [stderr] Compiling arrow-ord v53.3.0 [INFO] [stderr] Compiling arrow-string v53.3.0 [INFO] [stderr] Compiling arrow-ipc v53.3.0 [INFO] [stderr] Compiling arrow v53.3.0 [INFO] [stderr] Compiling parquet v53.3.0 [INFO] [stderr] Compiling vcf2parquet v0.6.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 1m 36s [INFO] running `Command { std: "docker" "inspect" "9c964f4fb57647bb32fad03dd59c89c5bd91073af3eebc913d4d868b47f8a604", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "9c964f4fb57647bb32fad03dd59c89c5bd91073af3eebc913d4d868b47f8a604", kill_on_drop: false }` [INFO] [stdout] 9c964f4fb57647bb32fad03dd59c89c5bd91073af3eebc913d4d868b47f8a604