[INFO] cloning repository https://github.com/genhub-bio/gen
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/genhub-bio/gen" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fgenhub-bio%2Fgen", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fgenhub-bio%2Fgen'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] e4496c58412a0f33a56f009e138ca60e3a74dbaf
[INFO] building genhub-bio/gen against master#c7f6aa2869acdbf014d094c6e427e554e160b6db for pr-146237-2
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fgenhub-bio%2Fgen" "/workspace/builds/worker-0-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-0-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/genhub-bio/gen
[INFO] finished tweaking git repo https://github.com/genhub-bio/gen
[INFO] tweaked toml for git repo https://github.com/genhub-bio/gen written to /workspace/builds/worker-0-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/genhub-bio/gen on toolchain c7f6aa2869acdbf014d094c6e427e554e160b6db
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c7f6aa2869acdbf014d094c6e427e554e160b6db" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/genhub-bio/gen already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c7f6aa2869acdbf014d094c6e427e554e160b6db" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]     Updating git repository `https://github.com/paddison/rust-sugiyama`
[INFO] [stderr]  Downloading crates ...
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[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+c7f6aa2869acdbf014d094c6e427e554e160b6db" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] dfde75bb65ab68755096ac8910a058ec627fb755aabf7029dfa6047e1ec2bc6c
[INFO] running `Command { std: "docker" "start" "-a" "dfde75bb65ab68755096ac8910a058ec627fb755aabf7029dfa6047e1ec2bc6c", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "dfde75bb65ab68755096ac8910a058ec627fb755aabf7029dfa6047e1ec2bc6c", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "dfde75bb65ab68755096ac8910a058ec627fb755aabf7029dfa6047e1ec2bc6c", kill_on_drop: false }`
[INFO] [stdout] dfde75bb65ab68755096ac8910a058ec627fb755aabf7029dfa6047e1ec2bc6c
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+c7f6aa2869acdbf014d094c6e427e554e160b6db" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 1dedd002d3f568a08622fcc369f9b8cbba19b0ab88c68f912e7d3629e880cd8c
[INFO] running `Command { std: "docker" "start" "-a" "1dedd002d3f568a08622fcc369f9b8cbba19b0ab88c68f912e7d3629e880cd8c", kill_on_drop: false }`
[INFO] [stderr]    Compiling unicode-ident v1.0.19
[INFO] [stderr]    Compiling libc v0.2.176
[INFO] [stderr]    Compiling serde_core v1.0.227
[INFO] [stderr]    Compiling serde v1.0.227
[INFO] [stderr]    Compiling memchr v2.7.6
[INFO] [stderr]    Compiling cc v1.2.39
[INFO] [stderr]    Compiling zlib-rs v0.5.2
[INFO] [stderr]    Compiling glob v0.3.3
[INFO] [stderr]    Compiling lexical-util v1.0.7
[INFO] [stderr]    Compiling crossbeam-channel v0.5.15
[INFO] [stderr]    Compiling either v1.15.0
[INFO] [stderr]    Compiling regex-syntax v0.8.6
[INFO] [stderr]    Compiling ahash v0.8.12
[INFO] [stderr]    Compiling libloading v0.8.9
[INFO] [stderr]    Compiling proc-macro2 v1.0.101
[INFO] [stderr]    Compiling capnp v0.21.5
[INFO] [stderr]    Compiling lazy_static v1.5.0
[INFO] [stderr]    Compiling bitflags v2.9.4
[INFO] [stderr]    Compiling clang-sys v1.8.1
[INFO] [stderr]    Compiling futures-util v0.3.31
[INFO] [stderr]    Compiling bstr v1.12.0
[INFO] [stderr]    Compiling itertools v0.12.1
[INFO] [stderr]    Compiling bindgen v0.69.5
[INFO] [stderr]    Compiling lexical-parse-integer v1.0.6
[INFO] [stderr]    Compiling lexical-write-integer v1.0.6
[INFO] [stderr]    Compiling hashbrown v0.14.5
[INFO] [stderr]    Compiling quote v1.0.40
[INFO] [stderr]    Compiling nom v7.1.3
[INFO] [stderr]    Compiling syn v2.0.106
[INFO] [stderr]    Compiling lexical-parse-float v1.0.6
[INFO] [stderr]    Compiling noodles-core v0.18.0
[INFO] [stderr]    Compiling lexical-write-float v1.0.6
[INFO] [stderr]    Compiling rustix v0.38.44
[INFO] [stderr]    Compiling phf_shared v0.11.3
[INFO] [stderr]    Compiling rand_core v0.6.4
[INFO] [stderr]    Compiling regex-automata v0.4.11
[INFO] [stderr]    Compiling parking_lot_core v0.9.11
[INFO] [stderr]    Compiling signal-hook-registry v1.4.6
[INFO] [stderr]    Compiling mio v1.0.4
[INFO] [stderr]    Compiling socket2 v0.6.0
[INFO] [stderr]    Compiling getrandom v0.3.3
[INFO] [stderr]    Compiling lexical-core v1.0.6
[INFO] [stderr]    Compiling parking_lot v0.12.4
[INFO] [stderr]    Compiling signal-hook v0.3.18
[INFO] [stderr]    Compiling getrandom v0.2.16
[INFO] [stderr]    Compiling capnpc v0.21.4
[INFO] [stderr]    Compiling instability v0.3.9
[INFO] [stderr]    Compiling unicode-width v0.2.0
[INFO] [stderr]    Compiling rand_core v0.9.3
[INFO] [stderr]    Compiling hashlink v0.9.1
[INFO] [stderr]    Compiling rand v0.8.5
[INFO] [stderr]    Compiling signal-hook-mio v0.2.4
[INFO] [stderr]    Compiling ring v0.17.14
[INFO] [stderr]    Compiling castaway v0.2.4
[INFO] [stderr]    Compiling itertools v0.13.0
[INFO] [stderr]    Compiling aho-corasick v1.1.3
[INFO] [stderr]    Compiling rustls v0.23.32
[INFO] [stderr]    Compiling fallible-iterator v0.3.0
[INFO] [stderr]    Compiling unicode-width v0.1.14
[INFO] [stderr]    Compiling cexpr v0.6.0
[INFO] [stderr]    Compiling phf_generator v0.11.3
[INFO] [stderr]    Compiling rand_chacha v0.9.0
[INFO] [stderr]    Compiling lru v0.12.5
[INFO] [stderr]    Compiling itertools v0.14.0
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]    Compiling fixedbitset v0.4.2
[INFO] [stderr]    Compiling regex v1.11.3
[INFO] [stderr]    Compiling serde_json v1.0.145
[INFO] [stderr]    Compiling cassowary v0.3.0
[INFO] [stderr]    Compiling sha2 v0.10.9
[INFO] [stderr]    Compiling petgraph v0.6.5
[INFO] [stderr]    Compiling rand v0.9.2
[INFO] [stderr]    Compiling tracing v0.1.41
[INFO] [stderr]    Compiling string_cache_codegen v0.5.4
[INFO] [stderr]    Compiling uuid v1.18.1
[INFO] [stderr]    Compiling include_dir_macros v0.7.4
[INFO] [stderr]    Compiling figment v0.10.19
[INFO] [stderr]    Compiling rusqlite_migration v1.3.1
[INFO] [stderr]    Compiling futures v0.3.31
[INFO] [stderr]    Compiling rustix v1.1.2
[INFO] [stderr]    Compiling gb-io v0.8.0
[INFO] [stderr]    Compiling gen-core v0.1.0 (/opt/rustwide/workdir/gen-core)
[INFO] [stderr]    Compiling gen-models v0.1.0 (/opt/rustwide/workdir/gen-models)
[INFO] [stderr]    Compiling intervaltree v0.2.7
[INFO] [stderr]    Compiling unicode-truncate v1.1.0
[INFO] [stderr] error: failed to run custom build command for `gen-core v0.1.0 (/opt/rustwide/workdir/gen-core)`
[INFO] [stderr] note: To improve backtraces for build dependencies, set the CARGO_PROFILE_DEV_BUILD_OVERRIDE_DEBUG=true environment variable to enable debug information generation.
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/target/debug/build/gen-core-6076133f4f490a36/build-script-build` (exit status: 101)
[INFO] [stderr]   --- stdout
[INFO] [stderr]   cargo:rerun-if-changed=gen-core.capnp
[INFO] [stderr] 
[INFO] [stderr]   --- stderr
[INFO] [stderr]   could not open file "src/generated/gen_core_capnp.rs" for writing: Read-only file system (os error 30)
[INFO] [stderr] 
[INFO] [stderr]   thread 'main' (1316) panicked at gen-core/build.rs:7:10:
[INFO] [stderr]   Failed to compile Cap'n Proto schema: Error { kind: Failed, extra: "Error while trying to execute `capnp compile`: Failed: Read-only file system (os error 30)." }
[INFO] [stderr]   stack backtrace:
[INFO] [stderr]      0:     0x57e323aae002 - std::backtrace_rs::backtrace::libunwind::trace::ha2a9ae9e69b87a03
[INFO] [stderr]                                  at /rustc/c7f6aa2869acdbf014d094c6e427e554e160b6db/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9
[INFO] [stderr]      1:     0x57e323aae002 - std::backtrace_rs::backtrace::trace_unsynchronized::h7757f80677e51a33
[INFO] [stderr]                                  at /rustc/c7f6aa2869acdbf014d094c6e427e554e160b6db/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14
[INFO] [stderr]      2:     0x57e323aae002 - std::sys::backtrace::_print_fmt::h6552c7cfff6c56fd
[INFO] [stderr]                                  at /rustc/c7f6aa2869acdbf014d094c6e427e554e160b6db/library/std/src/sys/backtrace.rs:66:9
[INFO] [stderr]      3:     0x57e323aae002 - <std::sys::backtrace::BacktraceLock::print::DisplayBacktrace as core::fmt::Display>::fmt::h8094475e363f1053
[INFO] [stderr]                                  at /rustc/c7f6aa2869acdbf014d094c6e427e554e160b6db/library/std/src/sys/backtrace.rs:39:26
[INFO] [stderr]      4:     0x57e323abef3f - core::fmt::rt::Argument::fmt::h88a25a51f53034c0
[INFO] [stderr]                                  at /rustc/c7f6aa2869acdbf014d094c6e427e554e160b6db/library/core/src/fmt/rt.rs:173:76
[INFO] [stderr]      5:     0x57e323abef3f - core::fmt::write::h501eb1fe28dabfbb
[INFO] [stderr]                                  at /rustc/c7f6aa2869acdbf014d094c6e427e554e160b6db/library/core/src/fmt/mod.rs:1468:25
[INFO] [stderr]      6:     0x57e323a80331 - std::io::default_write_fmt::h992ad3fe47aac8bd
[INFO] [stderr]                                  at /rustc/c7f6aa2869acdbf014d094c6e427e554e160b6db/library/std/src/io/mod.rs:639:11
[INFO] [stderr]      7:     0x57e323a80331 - std::io::Write::write_fmt::h8b96bc323947a405
[INFO] [stderr]                                  at /rustc/c7f6aa2869acdbf014d094c6e427e554e160b6db/library/std/src/io/mod.rs:1954:13
[INFO] [stderr]      8:     0x57e323a8a9c2 - std::sys::backtrace::BacktraceLock::print::h7aea9e658d3d67e5
[INFO] [stderr]                                  at /rustc/c7f6aa2869acdbf014d094c6e427e554e160b6db/library/std/src/sys/backtrace.rs:42:9
[INFO] [stderr]      9:     0x57e323a8ccfc - std::panicking::default_hook::{{closure}}::h9182baa5e2ff55c0
[INFO] [stderr]                                  at /rustc/c7f6aa2869acdbf014d094c6e427e554e160b6db/library/std/src/panicking.rs:301:27
[INFO] [stderr]     10:     0x57e323a8cb56 - std::panicking::default_hook::hfb4945b05f344c7f
[INFO] [stderr]                                  at /rustc/c7f6aa2869acdbf014d094c6e427e554e160b6db/library/std/src/panicking.rs:328:9
[INFO] [stderr]     11:     0x57e323a8d385 - std::panicking::panic_with_hook::h56e601fd3ec36096
[INFO] [stderr]                                  at /rustc/c7f6aa2869acdbf014d094c6e427e554e160b6db/library/std/src/panicking.rs:834:13
[INFO] [stderr]     12:     0x57e323a8d21a - std::panicking::panic_handler::{{closure}}::h1609d3c3912948cb
[INFO] [stderr]                                  at /rustc/c7f6aa2869acdbf014d094c6e427e554e160b6db/library/std/src/panicking.rs:707:13
[INFO] [stderr]     13:     0x57e323a8aaf9 - std::sys::backtrace::__rust_end_short_backtrace::h03d671aa8d777602
[INFO] [stderr]                                  at /rustc/c7f6aa2869acdbf014d094c6e427e554e160b6db/library/std/src/sys/backtrace.rs:174:18
[INFO] [stderr]     14:     0x57e323a7403d - __rustc[aa3aaccdf5d52e38]::rust_begin_unwind
[INFO] [stderr]                                  at /rustc/c7f6aa2869acdbf014d094c6e427e554e160b6db/library/std/src/panicking.rs:698:5
[INFO] [stderr]     15:     0x57e323ac6c00 - core::panicking::panic_fmt::h2ccb5f5950fb2ea3
[INFO] [stderr]                                  at /rustc/c7f6aa2869acdbf014d094c6e427e554e160b6db/library/core/src/panicking.rs:78:14
[INFO] [stderr]     16:     0x57e323ac5f76 - core::result::unwrap_failed::h1234828aefe38261
[INFO] [stderr]                                  at /rustc/c7f6aa2869acdbf014d094c6e427e554e160b6db/library/core/src/result.rs:1855:5
[INFO] [stderr]     17:     0x57e323a52fa9 - core::result::Result<T,E>::expect::hb652b597674777dd
[INFO] [stderr]     18:     0x57e3239cec7d - build_script_build::main::hbe1aafc59c572abd
[INFO] [stderr]     19:     0x57e3239ced63 - core::ops::function::FnOnce::call_once::h164824edac3fb6a2
[INFO] [stderr]     20:     0x57e3239ced06 - std::sys::backtrace::__rust_begin_short_backtrace::hc4240c8edbcec6fd
[INFO] [stderr]     21:     0x57e3239cece9 - std::rt::lang_start::{{closure}}::h14b52637dd992a90
[INFO] [stderr]     22:     0x57e323a81c30 - core::ops::function::impls::<impl core::ops::function::FnOnce<A> for &F>::call_once::haefda49eac6aabe3
[INFO] [stderr]                                  at /rustc/c7f6aa2869acdbf014d094c6e427e554e160b6db/library/core/src/ops/function.rs:287:21
[INFO] [stderr]     23:     0x57e323a81c30 - std::panicking::catch_unwind::do_call::hf37797e2fddac2f0
[INFO] [stderr]                                  at /rustc/c7f6aa2869acdbf014d094c6e427e554e160b6db/library/std/src/panicking.rs:590:40
[INFO] [stderr]     24:     0x57e323a81c30 - std::panicking::catch_unwind::h909d1e8985436f28
[INFO] [stderr]                                  at /rustc/c7f6aa2869acdbf014d094c6e427e554e160b6db/library/std/src/panicking.rs:553:19
[INFO] [stderr]     25:     0x57e323a81c30 - std::panic::catch_unwind::h5491b1948f80f254
[INFO] [stderr]                                  at /rustc/c7f6aa2869acdbf014d094c6e427e554e160b6db/library/std/src/panic.rs:359:14
[INFO] [stderr]     26:     0x57e323a81c30 - std::rt::lang_start_internal::{{closure}}::hf621f85e52fbc16b
[INFO] [stderr]                                  at /rustc/c7f6aa2869acdbf014d094c6e427e554e160b6db/library/std/src/rt.rs:175:24
[INFO] [stderr]     27:     0x57e323a81c30 - std::panicking::catch_unwind::do_call::h2de2328545762ad7
[INFO] [stderr]                                  at /rustc/c7f6aa2869acdbf014d094c6e427e554e160b6db/library/std/src/panicking.rs:590:40
[INFO] [stderr]     28:     0x57e323a81c30 - std::panicking::catch_unwind::h544f60d1149df03e
[INFO] [stderr]                                  at /rustc/c7f6aa2869acdbf014d094c6e427e554e160b6db/library/std/src/panicking.rs:553:19
[INFO] [stderr]     29:     0x57e323a81c30 - std::panic::catch_unwind::h90e123b5fe5a521c
[INFO] [stderr]                                  at /rustc/c7f6aa2869acdbf014d094c6e427e554e160b6db/library/std/src/panic.rs:359:14
[INFO] [stderr]     30:     0x57e323a81c30 - std::rt::lang_start_internal::hce9ddc5b3402b0d3
[INFO] [stderr]                                  at /rustc/c7f6aa2869acdbf014d094c6e427e554e160b6db/library/std/src/rt.rs:171:5
[INFO] [stderr]     31:     0x57e3239cecd1 - std::rt::lang_start::hea39a5bb5de18b31
[INFO] [stderr]     32:     0x57e3239cf1f5 - main
[INFO] [stderr]     33:     0x72be43f8c1ca - <unknown>
[INFO] [stderr]     34:     0x72be43f8c28b - __libc_start_main
[INFO] [stderr]     35:     0x57e3239cead5 - _start
[INFO] [stderr]     36:                0x0 - <unknown>
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] running `Command { std: "docker" "inspect" "1dedd002d3f568a08622fcc369f9b8cbba19b0ab88c68f912e7d3629e880cd8c", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "1dedd002d3f568a08622fcc369f9b8cbba19b0ab88c68f912e7d3629e880cd8c", kill_on_drop: false }`
[INFO] [stdout] 1dedd002d3f568a08622fcc369f9b8cbba19b0ab88c68f912e7d3629e880cd8c