[INFO] cloning repository https://github.com/dongspy/aligners [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/dongspy/aligners" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fdongspy%2Faligners", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fdongspy%2Faligners'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 9130bcf741067460ac38e17d65c5cbc713fcbe9d [INFO] building dongspy/aligners against master#c7f6aa2869acdbf014d094c6e427e554e160b6db for pr-146237-2 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fdongspy%2Faligners" "/workspace/builds/worker-5-tc1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-5-tc1/source'... [INFO] [stderr] done. [INFO] started tweaking git repo https://github.com/dongspy/aligners [INFO] finished tweaking git repo https://github.com/dongspy/aligners [INFO] tweaked toml for git repo https://github.com/dongspy/aligners written to /workspace/builds/worker-5-tc1/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/dongspy/aligners on toolchain c7f6aa2869acdbf014d094c6e427e554e160b6db [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c7f6aa2869acdbf014d094c6e427e554e160b6db" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/dongspy/aligners already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c7f6aa2869acdbf014d094c6e427e554e160b6db" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded triple_accel v0.4.0 [INFO] [stderr] Downloaded bytemuck v1.14.0 [INFO] [stderr] Downloaded enum-map-derive v0.6.0 [INFO] [stderr] Downloaded nalgebra-macros v0.1.0 [INFO] [stderr] Downloaded debruijn v0.3.4 [INFO] [stderr] Downloaded wyhash v0.5.0 [INFO] [stderr] Downloaded editdistancek v1.0.2 [INFO] [stderr] Downloaded enum-map v1.1.1 [INFO] [stderr] Downloaded safe_arch v0.7.1 [INFO] [stderr] Downloaded wide v0.7.13 [INFO] [stderr] Downloaded bio v1.4.0 [INFO] [stderr] Downloaded getset v0.1.2 [INFO] [stderr] Downloaded statrs v0.16.0 [INFO] [stderr] Downloaded itertools-num v0.1.3 [INFO] [stderr] Downloaded boomphf v0.5.9 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+c7f6aa2869acdbf014d094c6e427e554e160b6db" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 86a50a254e86fa4c5253159809d4f8dda3114836b6813e6f57b455daa8d4b79b [INFO] running `Command { std: "docker" "start" "-a" "86a50a254e86fa4c5253159809d4f8dda3114836b6813e6f57b455daa8d4b79b", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "86a50a254e86fa4c5253159809d4f8dda3114836b6813e6f57b455daa8d4b79b", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "86a50a254e86fa4c5253159809d4f8dda3114836b6813e6f57b455daa8d4b79b", kill_on_drop: false }` [INFO] [stdout] 86a50a254e86fa4c5253159809d4f8dda3114836b6813e6f57b455daa8d4b79b [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+c7f6aa2869acdbf014d094c6e427e554e160b6db" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 8babf1cde5c574f369d8387423c5fa38e72aec498c4fb03e59891db3375da7a6 [INFO] running `Command { std: "docker" "start" "-a" "8babf1cde5c574f369d8387423c5fa38e72aec498c4fb03e59891db3375da7a6", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.69 [INFO] [stderr] Compiling num-traits v0.2.17 [INFO] [stderr] Compiling libc v0.2.150 [INFO] [stderr] Compiling syn v1.0.109 [INFO] [stderr] Compiling serde v1.0.192 [INFO] [stderr] Compiling memoffset v0.9.0 [INFO] [stderr] Compiling crossbeam-utils v0.8.16 [INFO] [stderr] Compiling crossbeam-epoch v0.9.15 [INFO] [stderr] Compiling memchr v2.6.4 [INFO] [stderr] Compiling matrixmultiply v0.3.8 [INFO] [stderr] Compiling bytemuck v1.14.0 [INFO] [stderr] Compiling num-rational v0.4.1 [INFO] [stderr] Compiling rustversion v1.0.14 [INFO] [stderr] Compiling either v1.9.0 [INFO] [stderr] Compiling rawpointer v0.2.1 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling rayon-core v1.12.0 [INFO] [stderr] Compiling thiserror v1.0.50 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling serde_json v1.0.108 [INFO] [stderr] Compiling hashbrown v0.14.2 [INFO] [stderr] Compiling safe_arch v0.7.1 [INFO] [stderr] Compiling anyhow v1.0.75 [INFO] [stderr] Compiling bit-set v0.5.3 [INFO] [stderr] Compiling itertools v0.11.0 [INFO] [stderr] Compiling log v0.4.20 [INFO] [stderr] Compiling bytecount v0.6.7 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling smallvec v1.11.2 [INFO] [stderr] Compiling editdistancek v1.0.2 [INFO] [stderr] Compiling triple_accel v0.4.0 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling wide v0.7.13 [INFO] [stderr] Compiling strum v0.25.0 [INFO] [stderr] Compiling aho-corasick v1.1.2 [INFO] [stderr] Compiling csv-core v0.1.11 [INFO] [stderr] Compiling indexmap v2.1.0 [INFO] [stderr] Compiling quote v1.0.33 [INFO] [stderr] Compiling syn v2.0.39 [INFO] [stderr] Compiling num-integer v0.1.45 [INFO] [stderr] Compiling num-complex v0.4.4 [INFO] [stderr] Compiling approx v0.5.1 [INFO] [stderr] Compiling ordered-float v3.9.2 [INFO] [stderr] Compiling proc-macro-error-attr v1.0.4 [INFO] [stderr] Compiling getrandom v0.2.11 [INFO] [stderr] Compiling itertools-num v0.1.3 [INFO] [stderr] Compiling rand_core v0.6.4 [INFO] [stderr] Compiling crossbeam-deque v0.8.3 [INFO] [stderr] Compiling ndarray v0.15.6 [INFO] [stderr] Compiling petgraph v0.6.4 [INFO] [stderr] Compiling rand_chacha v0.3.1 [INFO] [stderr] Compiling wyhash v0.5.0 [INFO] [stderr] Compiling rand v0.8.5 [INFO] [stderr] Compiling regex-automata v0.4.3 [INFO] [stderr] Compiling rayon v1.8.0 [INFO] [stderr] Compiling simba v0.6.0 [INFO] [stderr] Compiling rand_distr v0.4.3 [INFO] [stderr] Compiling proc-macro-error v1.0.4 [INFO] [stderr] Compiling serde_derive v1.0.192 [INFO] [stderr] Compiling thiserror-impl v1.0.50 [INFO] [stderr] Compiling strum_macros v0.25.3 [INFO] [stderr] Compiling nalgebra-macros v0.1.0 [INFO] [stderr] Compiling derive-new v0.5.9 [INFO] [stderr] Compiling enum-map-derive v0.6.0 [INFO] [stderr] Compiling getset v0.1.2 [INFO] [stderr] Compiling regex v1.10.2 [INFO] [stderr] Compiling enum-map v1.1.1 [INFO] [stderr] Compiling bio-types v1.0.1 [INFO] [stderr] Compiling nalgebra v0.29.0 [INFO] [stderr] Compiling multimap v0.8.3 [INFO] [stderr] Compiling csv v1.3.0 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling boomphf v0.5.9 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Compiling debruijn v0.3.4 [INFO] [stderr] Compiling statrs v0.16.0 [INFO] [stderr] Compiling bio v1.4.0 [INFO] [stderr] Compiling lynxaligner v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused imports: `Deserialize` and `Serialize` [INFO] [stdout] --> src/aligner.rs:4:13 [INFO] [stdout] | [INFO] [stdout] 4 | use serde::{Deserialize, Serialize}; [INFO] [stdout] | ^^^^^^^^^^^ ^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 49.70s [INFO] running `Command { std: "docker" "inspect" "8babf1cde5c574f369d8387423c5fa38e72aec498c4fb03e59891db3375da7a6", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "8babf1cde5c574f369d8387423c5fa38e72aec498c4fb03e59891db3375da7a6", kill_on_drop: false }` [INFO] [stdout] 8babf1cde5c574f369d8387423c5fa38e72aec498c4fb03e59891db3375da7a6 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+c7f6aa2869acdbf014d094c6e427e554e160b6db" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] bb77fa0ff41b19fa6a37dd5d92796a2a9d96fc9c5f5340712be34673acc3b2fc [INFO] running `Command { std: "docker" "start" "-a" "bb77fa0ff41b19fa6a37dd5d92796a2a9d96fc9c5f5340712be34673acc3b2fc", kill_on_drop: false }` [INFO] [stdout] warning: unused imports: `Deserialize` and `Serialize` [INFO] [stdout] --> src/aligner.rs:4:13 [INFO] [stdout] | [INFO] [stdout] 4 | use serde::{Deserialize, Serialize}; [INFO] [stdout] | ^^^^^^^^^^^ ^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Compiling lynxaligner v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused imports: `Deserialize` and `Serialize` [INFO] [stdout] --> src/aligner.rs:4:13 [INFO] [stdout] | [INFO] [stdout] 4 | use serde::{Deserialize, Serialize}; [INFO] [stdout] | ^^^^^^^^^^^ ^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `quals` [INFO] [stdout] --> src/aligner.rs:155:9 [INFO] [stdout] | [INFO] [stdout] 155 | let quals = vec![30; 8]; [INFO] [stdout] | ^^^^^ help: if this is intentional, prefix it with an underscore: `_quals` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/aligner.rs:153:9 [INFO] [stdout] | [INFO] [stdout] 153 | let mut align_helper = Aligner::new(&refs, scoring, 8, 8); [INFO] [stdout] | ----^^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `quals` [INFO] [stdout] --> src/aligner.rs:173:9 [INFO] [stdout] | [INFO] [stdout] 173 | let quals = vec![30; 8]; [INFO] [stdout] | ^^^^^ help: if this is intentional, prefix it with an underscore: `_quals` [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 1.34s [INFO] running `Command { std: "docker" "inspect" "bb77fa0ff41b19fa6a37dd5d92796a2a9d96fc9c5f5340712be34673acc3b2fc", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "bb77fa0ff41b19fa6a37dd5d92796a2a9d96fc9c5f5340712be34673acc3b2fc", kill_on_drop: false }` [INFO] [stdout] bb77fa0ff41b19fa6a37dd5d92796a2a9d96fc9c5f5340712be34673acc3b2fc