[INFO] cloning repository https://github.com/dlejeune/collapse-expand-fasta
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/dlejeune/collapse-expand-fasta" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fdlejeune%2Fcollapse-expand-fasta", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fdlejeune%2Fcollapse-expand-fasta'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 8b3fdd5f38ab6a88f785eded90929652169170e2
[INFO] building dlejeune/collapse-expand-fasta against master#c7f6aa2869acdbf014d094c6e427e554e160b6db for pr-146237-2
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fdlejeune%2Fcollapse-expand-fasta" "/workspace/builds/worker-5-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-5-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/dlejeune/collapse-expand-fasta
[INFO] finished tweaking git repo https://github.com/dlejeune/collapse-expand-fasta
[INFO] tweaked toml for git repo https://github.com/dlejeune/collapse-expand-fasta written to /workspace/builds/worker-5-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/dlejeune/collapse-expand-fasta on toolchain c7f6aa2869acdbf014d094c6e427e554e160b6db
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c7f6aa2869acdbf014d094c6e427e554e160b6db" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/dlejeune/collapse-expand-fasta already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c7f6aa2869acdbf014d094c6e427e554e160b6db" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded nalgebra-macros v0.2.2
[INFO] [stderr]   Downloaded clap v4.5.18
[INFO] [stderr]   Downloaded derive-new v0.6.0
[INFO] [stderr]   Downloaded editdistancek v1.0.2
[INFO] [stderr]   Downloaded bio-types v1.0.4
[INFO] [stderr]   Downloaded portable-atomic-util v0.2.2
[INFO] [stderr]   Downloaded safe_arch v0.7.2
[INFO] [stderr]   Downloaded wide v0.7.28
[INFO] [stderr]   Downloaded rustc_version v0.1.7
[INFO] [stderr]   Downloaded statrs v0.17.1
[INFO] [stderr]   Downloaded multimap v0.10.0
[INFO] [stderr]   Downloaded semver v0.1.20
[INFO] [stderr]   Downloaded clap_builder v4.5.18
[INFO] [stderr]   Downloaded bio v2.0.3
[INFO] [stderr]   Downloaded triple_accel v0.4.0
[INFO] [stderr]   Downloaded itertools-num v0.1.3
[INFO] [stderr]   Downloaded newtype_derive v0.1.6
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+c7f6aa2869acdbf014d094c6e427e554e160b6db" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 899b5402eebec1a1896045f6aa7fafdd291ac17dc8f0113372d89c1482fceb1c
[INFO] running `Command { std: "docker" "start" "-a" "899b5402eebec1a1896045f6aa7fafdd291ac17dc8f0113372d89c1482fceb1c", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "899b5402eebec1a1896045f6aa7fafdd291ac17dc8f0113372d89c1482fceb1c", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "899b5402eebec1a1896045f6aa7fafdd291ac17dc8f0113372d89c1482fceb1c", kill_on_drop: false }`
[INFO] [stdout] 899b5402eebec1a1896045f6aa7fafdd291ac17dc8f0113372d89c1482fceb1c
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+c7f6aa2869acdbf014d094c6e427e554e160b6db" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 48af015d0164d9d9740f3bdef095b2953eb97abbbecde4c5a994642b43929691
[INFO] running `Command { std: "docker" "start" "-a" "48af015d0164d9d9740f3bdef095b2953eb97abbbecde4c5a994642b43929691", kill_on_drop: false }`
[INFO] [stderr]    Compiling memchr v2.7.4
[INFO] [stderr]    Compiling bytemuck v1.18.0
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]    Compiling matrixmultiply v0.3.9
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]    Compiling syn v2.0.79
[INFO] [stderr]    Compiling hashbrown v0.14.5
[INFO] [stderr]    Compiling num_threads v0.1.7
[INFO] [stderr]    Compiling time-macros v0.2.18
[INFO] [stderr]    Compiling bit-vec v0.8.0
[INFO] [stderr]    Compiling serde_json v1.0.128
[INFO] [stderr]    Compiling fixedbitset v0.4.2
[INFO] [stderr]    Compiling clap_builder v4.5.18
[INFO] [stderr]    Compiling colored v2.1.0
[INFO] [stderr]    Compiling fxhash v0.2.1
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling strum v0.26.3
[INFO] [stderr]    Compiling bit-set v0.8.0
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling safe_arch v0.7.2
[INFO] [stderr]    Compiling editdistancek v1.0.2
[INFO] [stderr]    Compiling triple_accel v0.4.0
[INFO] [stderr]    Compiling aho-corasick v1.1.3
[INFO] [stderr]    Compiling csv-core v0.1.11
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling indexmap v2.5.0
[INFO] [stderr]    Compiling time v0.3.36
[INFO] [stderr]    Compiling wide v0.7.28
[INFO] [stderr]    Compiling num-complex v0.4.6
[INFO] [stderr]    Compiling num-integer v0.1.46
[INFO] [stderr]    Compiling approx v0.5.1
[INFO] [stderr]    Compiling ordered-float v4.3.0
[INFO] [stderr]    Compiling itertools-num v0.1.3
[INFO] [stderr]    Compiling num-rational v0.4.2
[INFO] [stderr]    Compiling ndarray v0.16.1
[INFO] [stderr]    Compiling petgraph v0.6.5
[INFO] [stderr]    Compiling simple_logger v5.0.0
[INFO] [stderr]    Compiling regex-automata v0.4.8
[INFO] [stderr]    Compiling simba v0.8.1
[INFO] [stderr]    Compiling zerocopy-derive v0.7.35
[INFO] [stderr]    Compiling serde_derive v1.0.210
[INFO] [stderr]    Compiling thiserror-impl v1.0.64
[INFO] [stderr]    Compiling nalgebra-macros v0.2.2
[INFO] [stderr]    Compiling enum-map-derive v0.17.0
[INFO] [stderr]    Compiling derive-new v0.6.0
[INFO] [stderr]    Compiling strum_macros v0.26.4
[INFO] [stderr]    Compiling clap_derive v4.5.18
[INFO] [stderr]    Compiling enum-map v2.7.3
[INFO] [stderr]    Compiling zerocopy v0.7.35
[INFO] [stderr]    Compiling thiserror v1.0.64
[INFO] [stderr]    Compiling ppv-lite86 v0.2.20
[INFO] [stderr]    Compiling regex v1.11.0
[INFO] [stderr]    Compiling rand_chacha v0.3.1
[INFO] [stderr]    Compiling rand v0.8.5
[INFO] [stderr]    Compiling bio-types v1.0.4
[INFO] [stderr]    Compiling clap v4.5.18
[INFO] [stderr]    Compiling rand_distr v0.4.3
[INFO] [stderr]    Compiling serde v1.0.210
[INFO] [stderr]    Compiling multimap v0.10.0
[INFO] [stderr]    Compiling csv v1.3.0
[INFO] [stderr]    Compiling vec_map v0.8.2
[INFO] [stderr]    Compiling nalgebra v0.32.6
[INFO] [stderr]    Compiling statrs v0.17.1
[INFO] [stderr]    Compiling bio v2.0.3
[INFO] [stderr]    Compiling collapse-expand-fasta v0.2.1 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 51.04s
[INFO] running `Command { std: "docker" "inspect" "48af015d0164d9d9740f3bdef095b2953eb97abbbecde4c5a994642b43929691", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "48af015d0164d9d9740f3bdef095b2953eb97abbbecde4c5a994642b43929691", kill_on_drop: false }`
[INFO] [stdout] 48af015d0164d9d9740f3bdef095b2953eb97abbbecde4c5a994642b43929691
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+c7f6aa2869acdbf014d094c6e427e554e160b6db" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 503e012cf0c73f25659546f3270788080be1d38795c472ccc0c32a67ebf85103
[INFO] running `Command { std: "docker" "start" "-a" "503e012cf0c73f25659546f3270788080be1d38795c472ccc0c32a67ebf85103", kill_on_drop: false }`
[INFO] [stderr]    Compiling collapse-expand-fasta v0.2.1 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.67s
[INFO] running `Command { std: "docker" "inspect" "503e012cf0c73f25659546f3270788080be1d38795c472ccc0c32a67ebf85103", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "503e012cf0c73f25659546f3270788080be1d38795c472ccc0c32a67ebf85103", kill_on_drop: false }`
[INFO] [stdout] 503e012cf0c73f25659546f3270788080be1d38795c472ccc0c32a67ebf85103