[INFO] cloning repository https://github.com/anuradhawick/kmertools
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/anuradhawick/kmertools" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fanuradhawick%2Fkmertools", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fanuradhawick%2Fkmertools'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 559a80b722af66c10dfc59584d1d3c3812eff4f4
[INFO] building anuradhawick/kmertools against master#c7f6aa2869acdbf014d094c6e427e554e160b6db for pr-146237-2
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fanuradhawick%2Fkmertools" "/workspace/builds/worker-6-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-6-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/anuradhawick/kmertools
[INFO] finished tweaking git repo https://github.com/anuradhawick/kmertools
[INFO] tweaked toml for git repo https://github.com/anuradhawick/kmertools written to /workspace/builds/worker-6-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/anuradhawick/kmertools on toolchain c7f6aa2869acdbf014d094c6e427e554e160b6db
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c7f6aa2869acdbf014d094c6e427e554e160b6db" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/anuradhawick/kmertools already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c7f6aa2869acdbf014d094c6e427e554e160b6db" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded wasm-bindgen-shared v0.2.103
[INFO] [stderr]   Downloaded pyo3-macros v0.26.0
[INFO] [stderr]   Downloaded target-lexicon v0.13.3
[INFO] [stderr]   Downloaded unindent v0.2.4
[INFO] [stderr]   Downloaded pyo3-build-config v0.26.0
[INFO] [stderr]   Downloaded wasm-bindgen v0.2.103
[INFO] [stderr]   Downloaded serde v1.0.225
[INFO] [stderr]   Downloaded derive-new v0.6.0
[INFO] [stderr]   Downloaded itertools-num v0.1.3
[INFO] [stderr]   Downloaded wasm-bindgen-macro v0.2.103
[INFO] [stderr]   Downloaded rustc_version v0.1.7
[INFO] [stderr]   Downloaded newtype_derive v0.1.6
[INFO] [stderr]   Downloaded editdistancek v1.0.2
[INFO] [stderr]   Downloaded console v0.16.1
[INFO] [stderr]   Downloaded saa v3.2.1
[INFO] [stderr]   Downloaded bio-types v1.0.4
[INFO] [stderr]   Downloaded wide v0.7.33
[INFO] [stderr]   Downloaded js-sys v0.3.80
[INFO] [stderr]   Downloaded scc v3.0.7
[INFO] [stderr]   Downloaded statrs v0.18.0
[INFO] [stderr]   Downloaded pyo3-ffi v0.26.0
[INFO] [stderr]   Downloaded matrixmultiply v0.3.10
[INFO] [stderr]   Downloaded simba v0.9.1
[INFO] [stderr]   Downloaded triple_accel v0.4.0
[INFO] [stderr]   Downloaded bio v2.3.0
[INFO] [stderr]   Downloaded serde_core v1.0.225
[INFO] [stderr]   Downloaded serde_derive v1.0.225
[INFO] [stderr]   Downloaded wasm-bindgen-macro-support v0.2.103
[INFO] [stderr]   Downloaded sdd v4.0.1
[INFO] [stderr]   Downloaded memmap2 v0.9.8
[INFO] [stderr]   Downloaded wasm-bindgen-backend v0.2.103
[INFO] [stderr]   Downloaded semver v0.1.20
[INFO] [stderr]   Downloaded pyo3-macros-backend v0.26.0
[INFO] [stderr]   Downloaded petgraph v0.8.2
[INFO] [stderr]   Downloaded pyo3 v0.26.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+c7f6aa2869acdbf014d094c6e427e554e160b6db" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] cb7d66bbe63979c7bd6d05b4739faf367db000b4f194b4ac0a47b40df6147956
[INFO] running `Command { std: "docker" "start" "-a" "cb7d66bbe63979c7bd6d05b4739faf367db000b4f194b4ac0a47b40df6147956", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "cb7d66bbe63979c7bd6d05b4739faf367db000b4f194b4ac0a47b40df6147956", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "cb7d66bbe63979c7bd6d05b4739faf367db000b4f194b4ac0a47b40df6147956", kill_on_drop: false }`
[INFO] [stdout] cb7d66bbe63979c7bd6d05b4739faf367db000b4f194b4ac0a47b40df6147956
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+c7f6aa2869acdbf014d094c6e427e554e160b6db" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 3c19ffbde4528ee92e0cf093f81a872611c25cdbcb33f62852d45fcf52c0273c
[INFO] running `Command { std: "docker" "start" "-a" "3c19ffbde4528ee92e0cf093f81a872611c25cdbcb33f62852d45fcf52c0273c", kill_on_drop: false }`
[INFO] [stderr] warning: output filename collision.
[INFO] [stderr] The lib target `pykmertools` in package `pip v0.2.1 (/opt/rustwide/workdir/pip)` has the same output filename as the lib target `pykmertools` in package `conda v0.2.1 (/opt/rustwide/workdir/conda)`.
[INFO] [stderr] Colliding filename is: /opt/rustwide/target/debug/deps/libpykmertools.so
[INFO] [stderr] The targets should have unique names.
[INFO] [stderr] Consider changing their names to be unique or compiling them separately.
[INFO] [stderr] This may become a hard error in the future; see <https://github.com/rust-lang/cargo/issues/6313>.
[INFO] [stderr] warning: output filename collision.
[INFO] [stderr] The lib target `pykmertools` in package `pip v0.2.1 (/opt/rustwide/workdir/pip)` has the same output filename as the lib target `pykmertools` in package `conda v0.2.1 (/opt/rustwide/workdir/conda)`.
[INFO] [stderr] Colliding filename is: /opt/rustwide/target/debug/libpykmertools.so
[INFO] [stderr] The targets should have unique names.
[INFO] [stderr] Consider changing their names to be unique or compiling them separately.
[INFO] [stderr] This may become a hard error in the future; see <https://github.com/rust-lang/cargo/issues/6313>.
[INFO] [stderr] warning: output filename collision.
[INFO] [stderr] The lib target `pykmertools` in package `pip v0.2.1 (/opt/rustwide/workdir/pip)` has the same output filename as the lib target `pykmertools` in package `conda v0.2.1 (/opt/rustwide/workdir/conda)`.
[INFO] [stderr] Colliding filename is: /opt/rustwide/target/debug/deps/libpykmertools.so.dwp
[INFO] [stderr] The targets should have unique names.
[INFO] [stderr] Consider changing their names to be unique or compiling them separately.
[INFO] [stderr] This may become a hard error in the future; see <https://github.com/rust-lang/cargo/issues/6313>.
[INFO] [stderr] warning: output filename collision.
[INFO] [stderr] The lib target `pykmertools` in package `pip v0.2.1 (/opt/rustwide/workdir/pip)` has the same output filename as the lib target `pykmertools` in package `conda v0.2.1 (/opt/rustwide/workdir/conda)`.
[INFO] [stderr] Colliding filename is: /opt/rustwide/target/debug/libpykmertools.so.dwp
[INFO] [stderr] The targets should have unique names.
[INFO] [stderr] Consider changing their names to be unique or compiling them separately.
[INFO] [stderr] This may become a hard error in the future; see <https://github.com/rust-lang/cargo/issues/6313>.
[INFO] [stderr]    Compiling zerocopy v0.8.27
[INFO] [stderr]    Compiling serde_core v1.0.225
[INFO] [stderr]    Compiling serde v1.0.225
[INFO] [stderr]    Compiling target-lexicon v0.13.3
[INFO] [stderr]    Compiling memchr v2.7.5
[INFO] [stderr]    Compiling bytemuck v1.23.2
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]    Compiling matrixmultiply v0.3.10
[INFO] [stderr]    Compiling getrandom v0.2.16
[INFO] [stderr]    Compiling regex-syntax v0.8.6
[INFO] [stderr]    Compiling serde_derive v1.0.225
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling thiserror v2.0.16
[INFO] [stderr]    Compiling indexmap v2.11.4
[INFO] [stderr]    Compiling strum_macros v0.26.4
[INFO] [stderr]    Compiling rand_core v0.6.4
[INFO] [stderr]    Compiling safe_arch v0.7.4
[INFO] [stderr]    Compiling aho-corasick v1.1.3
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling csv-core v0.1.12
[INFO] [stderr]    Compiling derive-new v0.6.0
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling enum-map-derive v0.17.0
[INFO] [stderr]    Compiling thiserror-impl v2.0.16
[INFO] [stderr]    Compiling num-integer v0.1.46
[INFO] [stderr]    Compiling num-complex v0.4.6
[INFO] [stderr]    Compiling pyo3-build-config v0.26.0
[INFO] [stderr]    Compiling wide v0.7.33
[INFO] [stderr]    Compiling approx v0.5.1
[INFO] [stderr]    Compiling bit-set v0.8.0
[INFO] [stderr]    Compiling num-rational v0.4.2
[INFO] [stderr]    Compiling enum-map v2.7.3
[INFO] [stderr]    Compiling petgraph v0.8.2
[INFO] [stderr]    Compiling ordered-float v5.0.0
[INFO] [stderr]    Compiling itertools-num v0.1.3
[INFO] [stderr]    Compiling console v0.15.11
[INFO] [stderr]    Compiling thiserror v1.0.69
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling strum v0.26.3
[INFO] [stderr]    Compiling triple_accel v0.4.0
[INFO] [stderr]    Compiling editdistancek v1.0.2
[INFO] [stderr]    Compiling memmap2 v0.9.8
[INFO] [stderr]    Compiling ndarray v0.16.1
[INFO] [stderr]    Compiling clap_builder v4.5.47
[INFO] [stderr]    Compiling clap_derive v4.5.47
[INFO] [stderr]    Compiling console v0.16.1
[INFO] [stderr]    Compiling indicatif v0.17.11
[INFO] [stderr]    Compiling saa v3.2.1
[INFO] [stderr]    Compiling sdd v4.0.1
[INFO] [stderr]    Compiling simba v0.9.1
[INFO] [stderr]    Compiling ppv-lite86 v0.2.21
[INFO] [stderr]    Compiling pyo3-macros-backend v0.26.0
[INFO] [stderr]    Compiling pyo3-ffi v0.26.0
[INFO] [stderr]    Compiling pyo3 v0.26.0
[INFO] [stderr]    Compiling scc v3.0.7
[INFO] [stderr]    Compiling indicatif v0.18.0
[INFO] [stderr]    Compiling rand_chacha v0.3.1
[INFO] [stderr]    Compiling regex-automata v0.4.10
[INFO] [stderr]    Compiling rand v0.8.5
[INFO] [stderr]    Compiling kmer v0.2.1 (/opt/rustwide/workdir/kmer)
[INFO] [stderr]    Compiling indoc v2.0.6
[INFO] [stderr]    Compiling unindent v0.2.4
[INFO] [stderr]    Compiling clap v4.5.47
[INFO] [stderr]    Compiling rand_distr v0.4.3
[INFO] [stderr]    Compiling csv v1.3.1
[INFO] [stderr]    Compiling multimap v0.10.1
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]    Compiling vec_map v0.8.2
[INFO] [stderr]    Compiling scc v2.4.0
[INFO] [stderr]    Compiling pyo3-macros v0.26.0
[INFO] [stderr]    Compiling regex v1.11.2
[INFO] [stderr]    Compiling bio-types v1.0.4
[INFO] [stderr]    Compiling nalgebra v0.33.2
[INFO] [stderr]    Compiling statrs v0.18.0
[INFO] [stderr]    Compiling bio v2.3.0
[INFO] [stderr]    Compiling ktio v0.2.1 (/opt/rustwide/workdir/ktio)
[INFO] [stderr]    Compiling composition v0.2.1 (/opt/rustwide/workdir/composition)
[INFO] [stderr]    Compiling counter v0.2.1 (/opt/rustwide/workdir/counter)
[INFO] [stderr]    Compiling misc v0.2.1 (/opt/rustwide/workdir/misc)
[INFO] [stderr]    Compiling coverage v0.2.1 (/opt/rustwide/workdir/coverage)
[INFO] [stderr]    Compiling pybindings v0.2.1 (/opt/rustwide/workdir/pybindings)
[INFO] [stderr]    Compiling kmertools v0.2.1 (/opt/rustwide/workdir/kmertools)
[INFO] [stderr]    Compiling conda v0.2.1 (/opt/rustwide/workdir/conda)
[INFO] [stderr]    Compiling pip v0.2.1 (/opt/rustwide/workdir/pip)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 20s
[INFO] running `Command { std: "docker" "inspect" "3c19ffbde4528ee92e0cf093f81a872611c25cdbcb33f62852d45fcf52c0273c", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "3c19ffbde4528ee92e0cf093f81a872611c25cdbcb33f62852d45fcf52c0273c", kill_on_drop: false }`
[INFO] [stdout] 3c19ffbde4528ee92e0cf093f81a872611c25cdbcb33f62852d45fcf52c0273c
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+c7f6aa2869acdbf014d094c6e427e554e160b6db" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] e168b2019a5b622b012dccff72ab91e1e1ab47a0ba1ba17d925bc1b09c9be9f7
[INFO] running `Command { std: "docker" "start" "-a" "e168b2019a5b622b012dccff72ab91e1e1ab47a0ba1ba17d925bc1b09c9be9f7", kill_on_drop: false }`
[INFO] [stderr]    Compiling kmertools v0.2.1 (/opt/rustwide/workdir/kmertools)
[INFO] [stderr]    Compiling coverage v0.2.1 (/opt/rustwide/workdir/coverage)
[INFO] [stderr]    Compiling misc v0.2.1 (/opt/rustwide/workdir/misc)
[INFO] [stderr]    Compiling counter v0.2.1 (/opt/rustwide/workdir/counter)
[INFO] [stderr]    Compiling composition v0.2.1 (/opt/rustwide/workdir/composition)
[INFO] [stderr]    Compiling ktio v0.2.1 (/opt/rustwide/workdir/ktio)
[INFO] [stderr]    Compiling kmer v0.2.1 (/opt/rustwide/workdir/kmer)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 5.28s
[INFO] running `Command { std: "docker" "inspect" "e168b2019a5b622b012dccff72ab91e1e1ab47a0ba1ba17d925bc1b09c9be9f7", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "e168b2019a5b622b012dccff72ab91e1e1ab47a0ba1ba17d925bc1b09c9be9f7", kill_on_drop: false }`
[INFO] [stdout] e168b2019a5b622b012dccff72ab91e1e1ab47a0ba1ba17d925bc1b09c9be9f7