[INFO] cloning repository https://github.com/SciLifeLab/umi-transfer
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/SciLifeLab/umi-transfer" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FSciLifeLab%2Fumi-transfer", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FSciLifeLab%2Fumi-transfer'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] ed0f04e6a50bfd34424d5a39f867c4b545dc2fbe
[INFO] building SciLifeLab/umi-transfer against master#c7f6aa2869acdbf014d094c6e427e554e160b6db for pr-146237-2
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FSciLifeLab%2Fumi-transfer" "/workspace/builds/worker-1-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-1-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/SciLifeLab/umi-transfer
[INFO] finished tweaking git repo https://github.com/SciLifeLab/umi-transfer
[INFO] tweaked toml for git repo https://github.com/SciLifeLab/umi-transfer written to /workspace/builds/worker-1-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/SciLifeLab/umi-transfer on toolchain c7f6aa2869acdbf014d094c6e427e554e160b6db
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c7f6aa2869acdbf014d094c6e427e554e160b6db" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/SciLifeLab/umi-transfer already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c7f6aa2869acdbf014d094c6e427e554e160b6db" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded predicates v3.1.0
[INFO] [stderr]   Downloaded normalize-line-endings v0.3.0
[INFO] [stderr]   Downloaded predicates-core v1.0.6
[INFO] [stderr]   Downloaded owo-colors v4.0.0
[INFO] [stderr]   Downloaded assert_cmd v2.0.14
[INFO] [stderr]   Downloaded rexpect v0.5.0
[INFO] [stderr]   Downloaded predicates-tree v1.0.9
[INFO] [stderr]   Downloaded newtype_derive v0.1.6
[INFO] [stderr]   Downloaded bio-types v1.0.1
[INFO] [stderr]   Downloaded nalgebra-macros v0.1.0
[INFO] [stderr]   Downloaded globset v0.4.14
[INFO] [stderr]   Downloaded num-complex v0.4.5
[INFO] [stderr]   Downloaded libdeflater v0.12.0
[INFO] [stderr]   Downloaded ignore v0.4.22
[INFO] [stderr]   Downloaded file-format v0.24.0
[INFO] [stderr]   Downloaded wide v0.7.16
[INFO] [stderr]   Downloaded statrs v0.16.0
[INFO] [stderr]   Downloaded bio v1.6.0
[INFO] [stderr]   Downloaded flume v0.10.14
[INFO] [stderr]   Downloaded simba v0.6.0
[INFO] [stderr]   Downloaded triple_accel v0.4.0
[INFO] [stderr]   Downloaded core_affinity v0.8.1
[INFO] [stderr]   Downloaded libdeflate-sys v0.12.0
[INFO] [stderr]   Downloaded strum_macros v0.25.3
[INFO] [stderr]   Downloaded termtree v0.4.1
[INFO] [stderr]   Downloaded assert_fs v1.1.1
[INFO] [stderr]   Downloaded editdistancek v1.0.2
[INFO] [stderr]   Downloaded itertools-num v0.1.3
[INFO] [stderr]   Downloaded bstr v1.9.1
[INFO] [stderr]   Downloaded nalgebra v0.29.0
[INFO] [stderr]   Downloaded multimap v0.9.1
[INFO] [stderr]   Downloaded semver v0.1.20
[INFO] [stderr]   Downloaded is_ci v1.2.0
[INFO] [stderr]   Downloaded supports-color v2.1.0
[INFO] [stderr]   Downloaded difflib v0.4.0
[INFO] [stderr]   Downloaded comma v1.0.0
[INFO] [stderr]   Downloaded gzp v0.11.3
[INFO] [stderr]   Downloaded rustc_version v0.1.7
[INFO] [stderr]   Downloaded libz-sys v1.1.16
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+c7f6aa2869acdbf014d094c6e427e554e160b6db" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] f7b4175a54ba5782ba12a77835bff2eca6ab442828abf646f75976fdce5ea723
[INFO] running `Command { std: "docker" "start" "-a" "f7b4175a54ba5782ba12a77835bff2eca6ab442828abf646f75976fdce5ea723", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "f7b4175a54ba5782ba12a77835bff2eca6ab442828abf646f75976fdce5ea723", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "f7b4175a54ba5782ba12a77835bff2eca6ab442828abf646f75976fdce5ea723", kill_on_drop: false }`
[INFO] [stdout] f7b4175a54ba5782ba12a77835bff2eca6ab442828abf646f75976fdce5ea723
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+c7f6aa2869acdbf014d094c6e427e554e160b6db" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] dbc8d6d0d50a894f5d52a6033be8c6f91fb96f0dfb81d4738203c2ec069a90ca
[INFO] running `Command { std: "docker" "start" "-a" "dbc8d6d0d50a894f5d52a6033be8c6f91fb96f0dfb81d4738203c2ec069a90ca", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.81
[INFO] [stderr]    Compiling autocfg v1.2.0
[INFO] [stderr]    Compiling libc v0.2.153
[INFO] [stderr]    Compiling cc v1.0.95
[INFO] [stderr]    Compiling memchr v2.7.2
[INFO] [stderr]    Compiling serde v1.0.199
[INFO] [stderr]    Compiling paste v1.0.14
[INFO] [stderr]    Compiling thiserror v1.0.59
[INFO] [stderr]    Compiling bytemuck v1.15.0
[INFO] [stderr]    Compiling rustversion v1.0.15
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling rawpointer v0.2.1
[INFO] [stderr]    Compiling regex-syntax v0.8.3
[INFO] [stderr]    Compiling crc32fast v1.4.0
[INFO] [stderr]    Compiling anstyle-parse v0.2.3
[INFO] [stderr]    Compiling either v1.11.0
[INFO] [stderr]    Compiling safe_arch v0.7.1
[INFO] [stderr]    Compiling bitflags v2.5.0
[INFO] [stderr]    Compiling anyhow v1.0.82
[INFO] [stderr]    Compiling linux-raw-sys v0.4.13
[INFO] [stderr]    Compiling anstyle v1.0.6
[INFO] [stderr]    Compiling anstyle-query v1.0.2
[INFO] [stderr]    Compiling miniz_oxide v0.7.2
[INFO] [stderr]    Compiling is_ci v1.2.0
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling aho-corasick v1.1.3
[INFO] [stderr]    Compiling csv-core v0.1.11
[INFO] [stderr]    Compiling anstream v0.6.13
[INFO] [stderr]    Compiling futures-core v0.3.30
[INFO] [stderr]    Compiling unicode-width v0.1.12
[INFO] [stderr]    Compiling num-traits v0.2.18
[INFO] [stderr]    Compiling matrixmultiply v0.3.8
[INFO] [stderr]    Compiling cmake v0.1.50
[INFO] [stderr]    Compiling lock_api v0.4.12
[INFO] [stderr]    Compiling num-rational v0.4.1
[INFO] [stderr]    Compiling wide v0.7.16
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling quote v1.0.36
[INFO] [stderr]    Compiling rustix v0.38.34
[INFO] [stderr]    Compiling getrandom v0.2.14
[INFO] [stderr]    Compiling is-terminal v0.4.12
[INFO] [stderr]    Compiling num_cpus v1.16.0
[INFO] [stderr]    Compiling ryu v1.0.17
[INFO] [stderr]    Compiling syn v2.0.60
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]    Compiling spin v0.9.8
[INFO] [stderr]    Compiling clap_lex v0.7.0
[INFO] [stderr]    Compiling rand_core v0.6.4
[INFO] [stderr]    Compiling nanorand v0.7.0
[INFO] [stderr]    Compiling clap_builder v4.5.2
[INFO] [stderr]    Compiling core_affinity v0.8.1
[INFO] [stderr]    Compiling rand_chacha v0.3.1
[INFO] [stderr]    Compiling libz-sys v1.1.16
[INFO] [stderr]    Compiling libdeflate-sys v0.12.0
[INFO] [stderr]    Compiling supports-color v2.1.0
[INFO] [stderr]    Compiling console v0.15.8
[INFO] [stderr]    Compiling rand v0.8.5
[INFO] [stderr]    Compiling petgraph v0.6.4
[INFO] [stderr]    Compiling num-integer v0.1.46
[INFO] [stderr]    Compiling num-complex v0.4.5
[INFO] [stderr]    Compiling approx v0.5.1
[INFO] [stderr]    Compiling ordered-float v3.9.2
[INFO] [stderr]    Compiling itertools-num v0.1.3
[INFO] [stderr]    Compiling itertools v0.11.0
[INFO] [stderr]    Compiling rand_distr v0.4.3
[INFO] [stderr]    Compiling ndarray v0.15.6
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling simba v0.6.0
[INFO] [stderr]    Compiling bytes v1.6.0
[INFO] [stderr]    Compiling bytecount v0.6.8
[INFO] [stderr]    Compiling editdistancek v1.0.2
[INFO] [stderr]    Compiling zeroize v1.7.0
[INFO] [stderr]    Compiling triple_accel v0.4.0
[INFO] [stderr]    Compiling strum v0.25.0
[INFO] [stderr]    Compiling owo-colors v4.0.0
[INFO] [stderr]    Compiling itertools v0.12.1
[INFO] [stderr]    Compiling regex-automata v0.4.6
[INFO] [stderr]    Compiling tempfile v3.10.1
[INFO] [stderr]    Compiling file-format v0.24.0
[INFO] [stderr]    Compiling libdeflater v0.12.0
[INFO] [stderr]    Compiling nalgebra-macros v0.1.0
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]    Compiling regex v1.10.4
[INFO] [stderr]    Compiling serde_derive v1.0.199
[INFO] [stderr]    Compiling thiserror-impl v1.0.59
[INFO] [stderr]    Compiling pin-project-internal v1.1.5
[INFO] [stderr]    Compiling enum-map-derive v0.17.0
[INFO] [stderr]    Compiling strum_macros v0.25.3
[INFO] [stderr]    Compiling clap_derive v4.5.4
[INFO] [stderr]    Compiling enum-map v2.7.3
[INFO] [stderr]    Compiling pin-project v1.1.5
[INFO] [stderr]    Compiling flume v0.10.14
[INFO] [stderr]    Compiling dialoguer v0.11.0
[INFO] [stderr]    Compiling bio-types v1.0.1
[INFO] [stderr]    Compiling clap v4.5.4
[INFO] [stderr]    Compiling nalgebra v0.29.0
[INFO] [stderr]    Compiling flate2 v1.0.30
[INFO] [stderr]    Compiling gzp v0.11.3
[INFO] [stderr]    Compiling csv v1.3.0
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]    Compiling multimap v0.9.1
[INFO] [stderr]    Compiling vec_map v0.8.2
[INFO] [stderr]    Compiling statrs v0.16.0
[INFO] [stderr]    Compiling bio v1.6.0
[INFO] [stderr]    Compiling umi-transfer v1.5.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 33s
[INFO] running `Command { std: "docker" "inspect" "dbc8d6d0d50a894f5d52a6033be8c6f91fb96f0dfb81d4738203c2ec069a90ca", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "dbc8d6d0d50a894f5d52a6033be8c6f91fb96f0dfb81d4738203c2ec069a90ca", kill_on_drop: false }`
[INFO] [stdout] dbc8d6d0d50a894f5d52a6033be8c6f91fb96f0dfb81d4738203c2ec069a90ca
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+c7f6aa2869acdbf014d094c6e427e554e160b6db" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 96a523b48b4798f5faa139d5a1144cda470f93d3e464257f165a8ea6762487bc
[INFO] running `Command { std: "docker" "start" "-a" "96a523b48b4798f5faa139d5a1144cda470f93d3e464257f165a8ea6762487bc", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.153
[INFO] [stderr]    Compiling memchr v2.7.2
[INFO] [stderr]    Compiling crossbeam-utils v0.8.19
[INFO] [stderr]    Compiling memoffset v0.6.5
[INFO] [stderr]    Compiling same-file v1.0.6
[INFO] [stderr]    Compiling log v0.4.21
[INFO] [stderr]    Compiling predicates-core v1.0.6
[INFO] [stderr]    Compiling doc-comment v0.3.3
[INFO] [stderr]    Compiling float-cmp v0.9.0
[INFO] [stderr]    Compiling normalize-line-endings v0.3.0
[INFO] [stderr]    Compiling difflib v0.4.0
[INFO] [stderr]    Compiling termtree v0.4.1
[INFO] [stderr]    Compiling assert_cmd v2.0.14
[INFO] [stderr]    Compiling comma v1.0.0
[INFO] [stderr]    Compiling walkdir v2.5.0
[INFO] [stderr]    Compiling predicates-tree v1.0.9
[INFO] [stderr]    Compiling aho-corasick v1.1.3
[INFO] [stderr]    Compiling csv-core v0.1.11
[INFO] [stderr]    Compiling crossbeam-epoch v0.9.18
[INFO] [stderr]    Compiling csv v1.3.0
[INFO] [stderr]    Compiling crossbeam-deque v0.8.5
[INFO] [stderr]    Compiling regex-automata v0.4.6
[INFO] [stderr]    Compiling getrandom v0.2.14
[INFO] [stderr]    Compiling libz-sys v1.1.16
[INFO] [stderr]    Compiling is-terminal v0.4.12
[INFO] [stderr]    Compiling num_cpus v1.16.0
[INFO] [stderr]    Compiling console v0.15.8
[INFO] [stderr]    Compiling nix v0.25.1
[INFO] [stderr]    Compiling wait-timeout v0.2.0
[INFO] [stderr]    Compiling supports-color v2.1.0
[INFO] [stderr]    Compiling flate2 v1.0.30
[INFO] [stderr]    Compiling owo-colors v4.0.0
[INFO] [stderr]    Compiling rand_core v0.6.4
[INFO] [stderr]    Compiling nanorand v0.7.0
[INFO] [stderr]    Compiling core_affinity v0.8.1
[INFO] [stderr]    Compiling rand_chacha v0.3.1
[INFO] [stderr]    Compiling flume v0.10.14
[INFO] [stderr]    Compiling rand v0.8.5
[INFO] [stderr]    Compiling dialoguer v0.11.0
[INFO] [stderr]    Compiling gzp v0.11.3
[INFO] [stderr]    Compiling rand_distr v0.4.3
[INFO] [stderr]    Compiling nalgebra v0.29.0
[INFO] [stderr]    Compiling regex v1.10.4
[INFO] [stderr]    Compiling bstr v1.9.1
[INFO] [stderr]    Compiling globset v0.4.14
[INFO] [stderr]    Compiling bio-types v1.0.1
[INFO] [stderr]    Compiling predicates v3.1.0
[INFO] [stderr]    Compiling ignore v0.4.22
[INFO] [stderr]    Compiling rexpect v0.5.0
[INFO] [stderr]    Compiling globwalk v0.9.1
[INFO] [stderr]    Compiling assert_fs v1.1.1
[INFO] [stderr]    Compiling statrs v0.16.0
[INFO] [stderr]    Compiling bio v1.6.0
[INFO] [stderr]    Compiling umi-transfer v1.5.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 52.35s
[INFO] running `Command { std: "docker" "inspect" "96a523b48b4798f5faa139d5a1144cda470f93d3e464257f165a8ea6762487bc", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "96a523b48b4798f5faa139d5a1144cda470f93d3e464257f165a8ea6762487bc", kill_on_drop: false }`
[INFO] [stdout] 96a523b48b4798f5faa139d5a1144cda470f93d3e464257f165a8ea6762487bc