[INFO] cloning repository https://github.com/PyEED/aligner
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/PyEED/aligner" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FPyEED%2Faligner", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FPyEED%2Faligner'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 9940852083e0eab655a7357f126ef9a3b9478874
[INFO] building PyEED/aligner against master#c7f6aa2869acdbf014d094c6e427e554e160b6db for pr-146237-2
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FPyEED%2Faligner" "/workspace/builds/worker-5-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-5-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/PyEED/aligner
[INFO] finished tweaking git repo https://github.com/PyEED/aligner
[INFO] tweaked toml for git repo https://github.com/PyEED/aligner written to /workspace/builds/worker-5-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/PyEED/aligner on toolchain c7f6aa2869acdbf014d094c6e427e554e160b6db
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c7f6aa2869acdbf014d094c6e427e554e160b6db" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/PyEED/aligner already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c7f6aa2869acdbf014d094c6e427e554e160b6db" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded editdistancek v1.0.2
[INFO] [stderr]   Downloaded derive-new v0.6.0
[INFO] [stderr]   Downloaded bio-types v1.0.4
[INFO] [stderr]   Downloaded triple_accel v0.4.0
[INFO] [stderr]   Downloaded statrs v0.18.0
[INFO] [stderr]   Downloaded bio v2.2.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+c7f6aa2869acdbf014d094c6e427e554e160b6db" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] ec5df6400c0fe391734cb33744c707147bc23033b12d73307b58c9126b2fb2ee
[INFO] running `Command { std: "docker" "start" "-a" "ec5df6400c0fe391734cb33744c707147bc23033b12d73307b58c9126b2fb2ee", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "ec5df6400c0fe391734cb33744c707147bc23033b12d73307b58c9126b2fb2ee", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "ec5df6400c0fe391734cb33744c707147bc23033b12d73307b58c9126b2fb2ee", kill_on_drop: false }`
[INFO] [stdout] ec5df6400c0fe391734cb33744c707147bc23033b12d73307b58c9126b2fb2ee
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+c7f6aa2869acdbf014d094c6e427e554e160b6db" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] cbc84da09d9ab0eb23e8b547eda204bb2fd774b319a89781fdea4db787ce8b80
[INFO] running `Command { std: "docker" "start" "-a" "cbc84da09d9ab0eb23e8b547eda204bb2fd774b319a89781fdea4db787ce8b80", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.94
[INFO] [stderr]    Compiling libc v0.2.171
[INFO] [stderr]    Compiling bytemuck v1.22.0
[INFO] [stderr]    Compiling getrandom v0.3.2
[INFO] [stderr]    Compiling rustversion v1.0.20
[INFO] [stderr]    Compiling rawpointer v0.2.1
[INFO] [stderr]    Compiling matrixmultiply v0.3.9
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling aho-corasick v1.1.3
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]    Compiling anyhow v1.0.97
[INFO] [stderr]    Compiling smallvec v1.14.0
[INFO] [stderr]    Compiling portable-atomic v1.11.0
[INFO] [stderr]    Compiling indexmap v2.8.0
[INFO] [stderr]    Compiling csv-core v0.1.12
[INFO] [stderr]    Compiling fixedbitset v0.5.7
[INFO] [stderr]    Compiling bit-set v0.8.0
[INFO] [stderr]    Compiling clap_builder v4.5.35
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling bytecount v0.6.8
[INFO] [stderr]    Compiling safe_arch v0.7.4
[INFO] [stderr]    Compiling editdistancek v1.0.2
[INFO] [stderr]    Compiling triple_accel v0.4.0
[INFO] [stderr]    Compiling petgraph v0.7.1
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling quote v1.0.40
[INFO] [stderr]    Compiling wide v0.7.32
[INFO] [stderr]    Compiling syn v2.0.100
[INFO] [stderr]    Compiling num-integer v0.1.46
[INFO] [stderr]    Compiling num-complex v0.4.6
[INFO] [stderr]    Compiling approx v0.5.1
[INFO] [stderr]    Compiling itertools-num v0.1.3
[INFO] [stderr]    Compiling ordered-float v5.0.0
[INFO] [stderr]    Compiling regex-automata v0.4.9
[INFO] [stderr]    Compiling getrandom v0.2.15
[INFO] [stderr]    Compiling parking_lot_core v0.9.10
[INFO] [stderr]    Compiling signal-hook-registry v1.4.2
[INFO] [stderr]    Compiling rand_core v0.9.3
[INFO] [stderr]    Compiling rand_core v0.6.4
[INFO] [stderr]    Compiling num-rational v0.4.2
[INFO] [stderr]    Compiling mio v1.0.3
[INFO] [stderr]    Compiling socket2 v0.5.9
[INFO] [stderr]    Compiling rand_chacha v0.3.1
[INFO] [stderr]    Compiling rand_chacha v0.9.0
[INFO] [stderr]    Compiling parking_lot v0.12.3
[INFO] [stderr]    Compiling ndarray v0.16.1
[INFO] [stderr]    Compiling console v0.15.11
[INFO] [stderr]    Compiling rand v0.8.5
[INFO] [stderr]    Compiling rand v0.9.0
[INFO] [stderr]    Compiling indicatif v0.17.11
[INFO] [stderr]    Compiling num_cpus v1.16.0
[INFO] [stderr]    Compiling simba v0.9.0
[INFO] [stderr]    Compiling rand_distr v0.4.3
[INFO] [stderr]    Compiling regex v1.11.1
[INFO] [stderr]    Compiling serde_derive v1.0.219
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling derive-new v0.6.0
[INFO] [stderr]    Compiling strum_macros v0.26.4
[INFO] [stderr]    Compiling enum-map-derive v0.17.0
[INFO] [stderr]    Compiling thiserror-impl v2.0.12
[INFO] [stderr]    Compiling tokio-macros v2.5.0
[INFO] [stderr]    Compiling clap_derive v4.5.32
[INFO] [stderr]    Compiling enum-map v2.7.3
[INFO] [stderr]    Compiling tokio v1.44.1
[INFO] [stderr]    Compiling thiserror v1.0.69
[INFO] [stderr]    Compiling thiserror v2.0.12
[INFO] [stderr]    Compiling clap v4.5.35
[INFO] [stderr]    Compiling bio-types v1.0.4
[INFO] [stderr]    Compiling serde v1.0.219
[INFO] [stderr]    Compiling nalgebra v0.33.2
[INFO] [stderr]    Compiling vec_map v0.8.2
[INFO] [stderr]    Compiling multimap v0.10.0
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]    Compiling csv v1.3.1
[INFO] [stderr]    Compiling serde_json v1.0.140
[INFO] [stderr]    Compiling statrs v0.18.0
[INFO] [stderr]    Compiling bio v2.2.0
[INFO] [stderr]    Compiling aligner v0.1.1 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 57.78s
[INFO] running `Command { std: "docker" "inspect" "cbc84da09d9ab0eb23e8b547eda204bb2fd774b319a89781fdea4db787ce8b80", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "cbc84da09d9ab0eb23e8b547eda204bb2fd774b319a89781fdea4db787ce8b80", kill_on_drop: false }`
[INFO] [stdout] cbc84da09d9ab0eb23e8b547eda204bb2fd774b319a89781fdea4db787ce8b80
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+c7f6aa2869acdbf014d094c6e427e554e160b6db" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] daee6980cdf31900f72b4079897689be4494bdde8c59c25fcac7b6037f301bce
[INFO] running `Command { std: "docker" "start" "-a" "daee6980cdf31900f72b4079897689be4494bdde8c59c25fcac7b6037f301bce", kill_on_drop: false }`
[INFO] [stderr]    Compiling aligner v0.1.1 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.99s
[INFO] running `Command { std: "docker" "inspect" "daee6980cdf31900f72b4079897689be4494bdde8c59c25fcac7b6037f301bce", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "daee6980cdf31900f72b4079897689be4494bdde8c59c25fcac7b6037f301bce", kill_on_drop: false }`
[INFO] [stdout] daee6980cdf31900f72b4079897689be4494bdde8c59c25fcac7b6037f301bce