[INFO] cloning repository https://github.com/Michal-Babins/papro-rusty [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/Michal-Babins/papro-rusty" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FMichal-Babins%2Fpapro-rusty", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FMichal-Babins%2Fpapro-rusty'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] b2018538e29f362bd69c5984df9e05974bae79a8 [INFO] building Michal-Babins/papro-rusty against master#c7f6aa2869acdbf014d094c6e427e554e160b6db for pr-146237-2 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FMichal-Babins%2Fpapro-rusty" "/workspace/builds/worker-4-tc1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-4-tc1/source'... [INFO] [stderr] done. [INFO] started tweaking git repo https://github.com/Michal-Babins/papro-rusty [INFO] finished tweaking git repo https://github.com/Michal-Babins/papro-rusty [INFO] tweaked toml for git repo https://github.com/Michal-Babins/papro-rusty written to /workspace/builds/worker-4-tc1/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/Michal-Babins/papro-rusty on toolchain c7f6aa2869acdbf014d094c6e427e554e160b6db [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c7f6aa2869acdbf014d094c6e427e554e160b6db" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/Michal-Babins/papro-rusty already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c7f6aa2869acdbf014d094c6e427e554e160b6db" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... 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anyhow v1.0.93 [INFO] [stderr] Downloaded hashlink v0.9.1 [INFO] [stderr] Downloaded bzip2 v0.4.4 [INFO] [stderr] Downloaded rustc_version v0.1.7 [INFO] [stderr] Downloaded editdistancek v1.0.2 [INFO] [stderr] Downloaded strum_macros v0.26.4 [INFO] [stderr] Downloaded semver v0.1.20 [INFO] [stderr] Downloaded matrixmultiply v0.3.9 [INFO] [stderr] Downloaded tinytemplate v1.2.1 [INFO] [stderr] Downloaded bytecount v0.6.8 [INFO] [stderr] Downloaded rand_distr v0.4.3 [INFO] [stderr] Downloaded diff v0.1.13 [INFO] [stderr] Downloaded buffer-redux v1.0.2 [INFO] [stderr] Downloaded simba v0.6.0 [INFO] [stderr] Downloaded needletail v0.5.1 [INFO] [stderr] Downloaded enum-map-derive v0.17.0 [INFO] [stderr] Downloaded safe_arch v0.7.2 [INFO] [stderr] Downloaded pretty_assertions v1.4.1 [INFO] [stderr] Downloaded cc v1.1.37 [INFO] [stderr] Downloaded criterion v0.5.1 [INFO] [stderr] Downloaded wide v0.7.28 [INFO] [stderr] Downloaded multimap v0.9.1 [INFO] [stderr] Downloaded ordered-float v3.9.2 [INFO] [stderr] Downloaded statrs v0.16.1 [INFO] [stderr] Downloaded triple_accel v0.4.0 [INFO] [stderr] Downloaded itertools v0.11.0 [INFO] [stderr] Downloaded hashbrown v0.15.1 [INFO] [stderr] Downloaded plotters v0.3.7 [INFO] [stderr] Downloaded bio v1.6.0 [INFO] [stderr] Downloaded syn v2.0.87 [INFO] [stderr] Downloaded ciborium v0.2.2 [INFO] [stderr] Downloaded cast v0.3.0 [INFO] [stderr] Downloaded criterion-plot v0.5.0 [INFO] [stderr] Downloaded ndarray v0.15.6 [INFO] [stderr] Downloaded rustix v0.38.39 [INFO] [stderr] Downloaded fallible-streaming-iterator v0.1.9 [INFO] [stderr] Downloaded nalgebra v0.29.0 [INFO] [stderr] Downloaded bzip2-sys v0.1.11+1.0.8 [INFO] [stderr] Downloaded libc v0.2.162 [INFO] [stderr] Downloaded petgraph v0.6.5 [INFO] [stderr] Downloaded csv v1.3.1 [INFO] [stderr] Downloaded libsqlite3-sys v0.30.1 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+c7f6aa2869acdbf014d094c6e427e554e160b6db" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 5c11cd6066d34eccdc5dcfd56cd8c5f65e12d29acd58571659ef828dbd173e74 [INFO] running `Command { std: "docker" "start" "-a" "5c11cd6066d34eccdc5dcfd56cd8c5f65e12d29acd58571659ef828dbd173e74", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "5c11cd6066d34eccdc5dcfd56cd8c5f65e12d29acd58571659ef828dbd173e74", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "5c11cd6066d34eccdc5dcfd56cd8c5f65e12d29acd58571659ef828dbd173e74", kill_on_drop: false }` [INFO] [stdout] 5c11cd6066d34eccdc5dcfd56cd8c5f65e12d29acd58571659ef828dbd173e74 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+c7f6aa2869acdbf014d094c6e427e554e160b6db" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] c3c407e3727a9745e7fe69eb26f71ade912ddbfc9f0b98057144f45257bf9d0b [INFO] running `Command { std: "docker" "start" "-a" "c3c407e3727a9745e7fe69eb26f71ade912ddbfc9f0b98057144f45257bf9d0b", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.89 [INFO] [stderr] Compiling unicode-ident v1.0.13 [INFO] [stderr] Compiling libc v0.2.162 [INFO] [stderr] Compiling libm v0.2.11 [INFO] [stderr] Compiling byteorder v1.5.0 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling cc v1.1.37 [INFO] [stderr] Compiling serde v1.0.214 [INFO] [stderr] Compiling matrixmultiply v0.3.9 [INFO] [stderr] Compiling syn v1.0.109 [INFO] [stderr] Compiling bytemuck v1.19.0 [INFO] [stderr] Compiling aho-corasick v1.1.3 [INFO] [stderr] Compiling rawpointer v0.2.1 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling safe_arch v0.7.2 [INFO] [stderr] Compiling regex-syntax v0.8.5 [INFO] [stderr] Compiling heck v0.5.0 [INFO] [stderr] Compiling wide v0.7.28 [INFO] [stderr] Compiling quote v1.0.37 [INFO] [stderr] Compiling getrandom v0.2.15 [INFO] [stderr] Compiling syn v2.0.87 [INFO] [stderr] Compiling rand_core v0.6.4 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling bzip2-sys v0.1.11+1.0.8 [INFO] [stderr] Compiling num-complex v0.4.6 [INFO] [stderr] Compiling num-integer v0.1.46 [INFO] [stderr] Compiling approx v0.5.1 [INFO] [stderr] Compiling lzma-sys v0.1.20 [INFO] [stderr] Compiling thiserror v1.0.68 [INFO] [stderr] Compiling utf8parse v0.2.2 [INFO] [stderr] Compiling libsqlite3-sys v0.30.1 [INFO] [stderr] Compiling anstyle-parse v0.2.6 [INFO] [stderr] Compiling num-rational v0.4.2 [INFO] [stderr] Compiling simba v0.6.0 [INFO] [stderr] Compiling regex-automata v0.4.8 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling anstyle-query v1.1.2 [INFO] [stderr] Compiling anstyle v1.0.10 [INFO] [stderr] Compiling anyhow v1.0.93 [INFO] [stderr] Compiling is_terminal_polyfill v1.70.1 [INFO] [stderr] Compiling hashbrown v0.15.1 [INFO] [stderr] Compiling colorchoice v1.0.3 [INFO] [stderr] Compiling smallvec v1.13.2 [INFO] [stderr] Compiling anstream v0.6.18 [INFO] [stderr] Compiling miniz_oxide v0.8.0 [INFO] [stderr] Compiling indexmap v2.6.0 [INFO] [stderr] Compiling csv-core v0.1.11 [INFO] [stderr] Compiling bytecount v0.6.8 [INFO] [stderr] Compiling strsim v0.11.1 [INFO] [stderr] Compiling serde_json v1.0.132 [INFO] [stderr] Compiling fixedbitset v0.4.2 [INFO] [stderr] Compiling clap_lex v0.7.2 [INFO] [stderr] Compiling bit-vec v0.6.3 [INFO] [stderr] Compiling clap_builder v4.5.20 [INFO] [stderr] Compiling bit-set v0.5.3 [INFO] [stderr] Compiling petgraph v0.6.5 [INFO] [stderr] Compiling flate2 v1.0.34 [INFO] [stderr] Compiling regex v1.11.1 [INFO] [stderr] Compiling nalgebra-macros v0.1.0 [INFO] [stderr] Compiling xz2 v0.1.7 [INFO] [stderr] Compiling bzip2 v0.4.4 [INFO] [stderr] Compiling parking_lot_core v0.9.10 [INFO] [stderr] Compiling itertools v0.11.0 [INFO] [stderr] Compiling ndarray v0.15.6 [INFO] [stderr] Compiling ordered-float v3.9.2 [INFO] [stderr] Compiling zerocopy-derive v0.7.35 [INFO] [stderr] Compiling serde_derive v1.0.214 [INFO] [stderr] Compiling zerocopy v0.7.35 [INFO] [stderr] Compiling thiserror-impl v1.0.68 [INFO] [stderr] Compiling derive-new v0.6.0 [INFO] [stderr] Compiling ppv-lite86 v0.2.20 [INFO] [stderr] Compiling ahash v0.8.11 [INFO] [stderr] Compiling rand_chacha v0.3.1 [INFO] [stderr] Compiling hashbrown v0.14.5 [INFO] [stderr] Compiling rand v0.8.5 [INFO] [stderr] Compiling enum-map-derive v0.17.0 [INFO] [stderr] Compiling strum_macros v0.26.4 [INFO] [stderr] Compiling enum-map v2.7.3 [INFO] [stderr] Compiling hashlink v0.9.1 [INFO] [stderr] Compiling strum_macros v0.25.3 [INFO] [stderr] Compiling rand_distr v0.4.3 [INFO] [stderr] Compiling clap_derive v4.5.18 [INFO] [stderr] Compiling itertools-num v0.1.3 [INFO] [stderr] Compiling nalgebra v0.29.0 [INFO] [stderr] Compiling is-terminal v0.4.13 [INFO] [stderr] Compiling crossbeam-queue v0.3.11 [INFO] [stderr] Compiling crossbeam-channel v0.5.13 [INFO] [stderr] Compiling fxhash v0.2.1 [INFO] [stderr] Compiling buffer-redux v1.0.2 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling editdistancek v1.0.2 [INFO] [stderr] Compiling strum v0.25.0 [INFO] [stderr] Compiling bitflags v2.6.0 [INFO] [stderr] Compiling fallible-iterator v0.3.0 [INFO] [stderr] Compiling triple_accel v0.4.0 [INFO] [stderr] Compiling bio-types v1.0.4 [INFO] [stderr] Compiling fallible-streaming-iterator v0.1.9 [INFO] [stderr] Compiling env_logger v0.10.2 [INFO] [stderr] Compiling crossbeam v0.8.4 [INFO] [stderr] Compiling needletail v0.5.1 [INFO] [stderr] Compiling dashmap v5.5.3 [INFO] [stderr] Compiling clap v4.5.20 [INFO] [stderr] Compiling rayon v1.10.0 [INFO] [stderr] Compiling bytes v1.8.0 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling multimap v0.9.1 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Compiling csv v1.3.1 [INFO] [stderr] Compiling rusqlite v0.32.1 [INFO] [stderr] Compiling statrs v0.16.1 [INFO] [stderr] Compiling bio v1.6.0 [INFO] [stderr] Compiling papro-rusty v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused import: `profile::analyzer::DetailedAnalysis` [INFO] [stdout] --> src/main.rs:10:5 [INFO] [stdout] | [INFO] [stdout] 10 | use profile::analyzer::DetailedAnalysis; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `PathBuf` and `Path` [INFO] [stdout] --> src/main.rs:14:17 [INFO] [stdout] | [INFO] [stdout] 14 | use std::path::{Path, PathBuf}; [INFO] [stdout] | ^^^^ ^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `total_sample_kmers` [INFO] [stdout] --> src/profile/analyzer.rs:122:5 [INFO] [stdout] | [INFO] [stdout] 122 | total_sample_kmers: usize, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_total_sample_kmers` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `total_profile_kmers` [INFO] [stdout] --> src/profile/analyzer.rs:123:5 [INFO] [stdout] | [INFO] [stdout] 123 | total_profile_kmers: usize, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_total_profile_kmers` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `total_profile_kmers` [INFO] [stdout] --> src/profile/analyzer.rs:247:13 [INFO] [stdout] | [INFO] [stdout] 247 | let total_profile_kmers = self.get_profile_kmer_count(profile_name.to_string())?; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_total_profile_kmers` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `ref_freq` [INFO] [stdout] --> src/profile/analyzer.rs:358:71 [INFO] [stdout] | [INFO] [stdout] 358 | fn add_shared_kmer(&mut self, sequence: String, sample_freq: f64, ref_freq: f64) { [INFO] [stdout] | ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_ref_freq` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `verbose` [INFO] [stdout] --> src/main.rs:54:49 [INFO] [stdout] | [INFO] [stdout] 54 | fn handle_db_command(cmd: cli::DatabaseCommand, verbose: bool) -> Result<()> { [INFO] [stdout] | ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_verbose` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `verbose` [INFO] [stdout] --> src/main.rs:239:53 [INFO] [stdout] | [INFO] [stdout] 239 | fn handle_analyze_command(cmd: cli::AnalyzeCommand, verbose: bool) -> Result<()> { [INFO] [stdout] | ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_verbose` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: fields `sequence` and `frequency` are never read [INFO] [stdout] --> src/profile/analyzer.rs:302:9 [INFO] [stdout] | [INFO] [stdout] 301 | pub struct UniqueKmer { [INFO] [stdout] | ---------- fields in this struct [INFO] [stdout] 302 | pub sequence: String, [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] 303 | pub frequency: f64, [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `UniqueKmer` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis [INFO] [stdout] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct `FrequencyDistribution` is never constructed [INFO] [stdout] --> src/profile/analyzer.rs:328:12 [INFO] [stdout] | [INFO] [stdout] 328 | pub struct FrequencyDistribution { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 2m 14s [INFO] running `Command { std: "docker" "inspect" "c3c407e3727a9745e7fe69eb26f71ade912ddbfc9f0b98057144f45257bf9d0b", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "c3c407e3727a9745e7fe69eb26f71ade912ddbfc9f0b98057144f45257bf9d0b", kill_on_drop: false }` [INFO] [stdout] c3c407e3727a9745e7fe69eb26f71ade912ddbfc9f0b98057144f45257bf9d0b [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+c7f6aa2869acdbf014d094c6e427e554e160b6db" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] d1ab4eb865f4083aad08f00d3326f75a5b6e125b37efb25f57f31014c643be57 [INFO] running `Command { std: "docker" "start" "-a" "d1ab4eb865f4083aad08f00d3326f75a5b6e125b37efb25f57f31014c643be57", kill_on_drop: false }` [INFO] [stderr] Compiling serde v1.0.214 [INFO] [stderr] Compiling half v2.4.1 [INFO] [stderr] Compiling plotters-backend v0.3.7 [INFO] [stderr] Compiling ciborium-io v0.2.2 [INFO] [stderr] Compiling rustix v0.38.39 [INFO] [stderr] Compiling itertools v0.10.5 [INFO] [stderr] Compiling cast v0.3.0 [INFO] [stderr] Compiling same-file v1.0.6 [INFO] [stderr] Compiling diff v0.1.13 [INFO] [stderr] Compiling walkdir v2.5.0 [INFO] [stderr] Compiling yansi v1.0.1 [INFO] [stderr] Compiling ciborium-ll v0.2.2 [INFO] [stderr] Compiling plotters-svg v0.3.7 [INFO] [stderr] Compiling oorandom v11.1.4 [INFO] [stderr] Compiling anes v0.1.6 [INFO] [stderr] Compiling fastrand v2.2.0 [INFO] [stderr] Compiling plotters v0.3.7 [INFO] [stderr] Compiling rusqlite v0.32.1 [INFO] [stderr] Compiling pretty_assertions v1.4.1 [INFO] [stderr] Compiling criterion-plot v0.5.0 [INFO] [stderr] Compiling tempfile v3.14.0 [INFO] [stderr] Compiling serde_json v1.0.132 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling ciborium v0.2.2 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Compiling multimap v0.9.1 [INFO] [stderr] Compiling csv v1.3.1 [INFO] [stderr] Compiling bio v1.6.0 [INFO] [stderr] Compiling tinytemplate v1.2.1 [INFO] [stderr] Compiling criterion v0.5.1 [INFO] [stderr] Compiling papro-rusty v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused import: `profile::analyzer::DetailedAnalysis` [INFO] [stdout] --> src/main.rs:10:5 [INFO] [stdout] | [INFO] [stdout] 10 | use profile::analyzer::DetailedAnalysis; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `PathBuf` and `Path` [INFO] [stdout] --> src/main.rs:14:17 [INFO] [stdout] | [INFO] [stdout] 14 | use std::path::{Path, PathBuf}; [INFO] [stdout] | ^^^^ ^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `total_sample_kmers` [INFO] [stdout] --> src/profile/analyzer.rs:122:5 [INFO] [stdout] | [INFO] [stdout] 122 | total_sample_kmers: usize, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_total_sample_kmers` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `total_profile_kmers` [INFO] [stdout] --> src/profile/analyzer.rs:123:5 [INFO] [stdout] | [INFO] [stdout] 123 | total_profile_kmers: usize, [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_total_profile_kmers` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `total_profile_kmers` [INFO] [stdout] --> src/profile/analyzer.rs:247:13 [INFO] [stdout] | [INFO] [stdout] 247 | let total_profile_kmers = self.get_profile_kmer_count(profile_name.to_string())?; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_total_profile_kmers` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `ref_freq` [INFO] [stdout] --> src/profile/analyzer.rs:358:71 [INFO] [stdout] | [INFO] [stdout] 358 | fn add_shared_kmer(&mut self, sequence: String, sample_freq: f64, ref_freq: f64) { [INFO] [stdout] | ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_ref_freq` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `verbose` [INFO] [stdout] --> src/main.rs:54:49 [INFO] [stdout] | [INFO] [stdout] 54 | fn handle_db_command(cmd: cli::DatabaseCommand, verbose: bool) -> Result<()> { [INFO] [stdout] | ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_verbose` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `verbose` [INFO] [stdout] --> src/main.rs:239:53 [INFO] [stdout] | [INFO] [stdout] 239 | fn handle_analyze_command(cmd: cli::AnalyzeCommand, verbose: bool) -> Result<()> { [INFO] [stdout] | ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_verbose` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: fields `sequence` and `frequency` are never read [INFO] [stdout] --> src/profile/analyzer.rs:302:9 [INFO] [stdout] | [INFO] [stdout] 301 | pub struct UniqueKmer { [INFO] [stdout] | ---------- fields in this struct [INFO] [stdout] 302 | pub sequence: String, [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] 303 | pub frequency: f64, [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `UniqueKmer` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis [INFO] [stdout] = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct `FrequencyDistribution` is never constructed [INFO] [stdout] --> src/profile/analyzer.rs:328:12 [INFO] [stdout] | [INFO] [stdout] 328 | pub struct FrequencyDistribution { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 37.52s [INFO] running `Command { std: "docker" "inspect" "d1ab4eb865f4083aad08f00d3326f75a5b6e125b37efb25f57f31014c643be57", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "d1ab4eb865f4083aad08f00d3326f75a5b6e125b37efb25f57f31014c643be57", kill_on_drop: false }` [INFO] [stdout] d1ab4eb865f4083aad08f00d3326f75a5b6e125b37efb25f57f31014c643be57